Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota)

Persoonia: Molecular Phylogeny and Evolution of Fungi

Volumn 32, Issue , 2014, Pages 25-51

  Verkley, G J M ^a   Dukik, K ^a   Renfurm, R ^a   Goker M ^b   Stielow, J B ^a  

^a CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

ITS; LSU; Microsphaeropsis; Paraconiothyrium; Taxonomy; tubulin; actin

Indexed keywords

EID: 84898857226     PISSN: 00315850     EISSN: None     Source Type: Journal    
DOI: 10.3767/003158514X679191     Document Type: Article

References (59)

1. Aveskamp MM, Gruyter J de, Woudenberg JHC, Verkley GJM, Crous PW. 2010. Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera. Studies in Mycology 65: 1-60.
2. Aveskamp MM, Verkley GJM, Gruyter J de, Murace MA, Perelló A, et al. 2009. DNA phylogeny reveals polyphyly of Phoma section Peyronellea and multiple taxonomic novelties. Mycologia 101: 363-382.
3. Baker RH, DeSalle R. 1997. Multiple sources of character information and the phylogeny of Hawaiian Drosophilids. Systematic Biology 46: 654-673.
4. Baker RH, Yu XB, DeSalle R. 1998. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Molecular Phylogenetics and Evolution 9: 427-436.
5. Balajee SA, Sigler L, Brandt ME. 2007. DNA and the classical way: Identification of medically important molds in the 21st century. Medical Mycology 45: 475-490.
6. Bestagno Biga ML, Ciferri R, Bestagno G. 1958. Ordinamento artificiale delle specie del genere Coniothyrium Corda. Sydowia, Annales Mycologici ser. II, 12: 258-320.
7. Boerema GH, Gruyter J de, Noordeloos ME, Hamers MEC. 2004. Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, Wallingford, United Kingdom.
8. Budziszewska J, Szypula W, Wilk M, Wrzosek M. 2011. Paraconiothyrium babiogorense sp. nov., a new endophyte from fir club moss Huperzia selago (L.) Bernh. ex Schrank & Mart. (Huperziaceae). Mycotaxon 115: 457-468.
9. Câmara MPS, Palm ME, Berkum P van, Stewart EL. 2001. Systematics of Paraphaeosphaeria: a molecular and morphological approach. Mycological Research 105: 41-56.
10. Câmara MPS, Ramaley AW, Castlebury LA, Palm ME. 2003. Neophaeosphaeria and Phaeosphaeriopsis, segregates of Paraphaeosphaeria. Mycological Research 107: 516-522.
11. Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
12. Carisse O, Bernier J. 2002a. Effect of environmental factors on growth, pycnidial production and spore germination of Microsphaeropsis isolates with biocontrol potential against apple scab. Mycological Research 106: 1455-1462.
13. Carisse O, Bernier J. 2002b. Microsphaeropsis ochracea sp. nov. associated with dead apple leaves. Mycologia 94: 297-301.
14. Carisse O, El-Bassam S, Benhamou N. 2001. Effect of Microsphaeropsis sp. strain P130A on germination and production of sclerotia of Rhizoctonia solani and interaction between the antagonist and the pathogen. Phytopathology 91: 782-791.
15. Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G. 2004. MycoBank: an online initiative to launch mycology into the 21st century. Studies in Mycology 50: 19-22.
16. Crous PW, Groenewald JZ. 2006. Microdiplodia hawaiiensis. Fungal Planet, no. 7. CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands.
17. Crous PW, Summerell BA, Swart L, Denman S, Taylor JE, et al. 2011. Fungal pathogens of Proteaceae. Persoonia 27: 20-45.
18. Crous PW, Verkley GJM, Christensen M, Castañeda-Ruiz RF, Groenewald JZ. 2012. How important are conidial appendages? Persoonia 28: 126-137.
19. Crous PW, Verkley GJM, Groenewald JZ, Samson RA. 2009. Fungal biodiversity. CBS Laboratory Manuals Series 1. CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands.
20. Damm U, Verkley GJM, Crous PW, Fourie PH, Haegi A, Riccioni L. 2008. Novel Paraconiothyrium species on stone fruit trees and other woody hosts. Persoonia 20: 9-17.
21. Domsch KH, Gams W, Anderson T-H. 2007. Compendium of soil fungi. Second edition. IHW Verlag, Eching.
22. El-Bassam S, Benhamou N, Carisse O. 2002. The role of melanin in the antagonistic interaction between the apple scab pathogen Venturia inaequalis and Microsphaeropsis ochracea. Canadian Journal of Microbiology 48: 349-358.
23. Farris J. 1972. Estimating phylogenetic trees from distance matrices. The American Naturalist 106: 645-667.
24. Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17: 368-376.
25. Fitch WM. 1971. Towards defining the course of evolution: minimal change for a specified tree topology. Systematic Zoology 20: 406-416.
26. Göker M, García-Blázquez G, Voglmayr H, Tellería MT, Martín MP. 2009a. Molecular taxonomy of phytopathogenic fungi: a case study in Peronospora. PLoS ONE 4: e6319.
27. Göker M, Voglmayr H, García-Blázquez G, Oberwinkler F. 2009b. Species delimitation in downy mildews: the case of Hyaloperonospora in the light of nuclear ribosomal internal transcribed spacer and large subunit sequences. Mycological Research 113: 308-325.
28. Gordon RA, Sutton DA, Thompson EH, Shrikanth V, Verkley GJM, et al. 2012. Cutaneous phaeohyphomycosis caused by Paraconiothyrium cyclothyrioides. Journal of Clinical Microbiology 50: 3795-3798.
29. Gruyter J de, Aveskamp MM, Woudenberg JHC, Verkley GJM, Groenewald JZ, Crous PW. 2009. Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex. Mycological Research 113: 508-519.
30. Gruyter J de, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW. 2010. Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102: 1066-1081.
31. Gruyter J de, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW. 2012, '2013'. Redisposition of Phoma-like anamorphs in Pleosporales. Studies in Mycology 75: 1-36.
32. Hess PN, Moraes Russo CA de. 2007. An empirical test of the midpoint rooting method. Biological Journal of the Linnean Society 92: 669-674.
33. Hoffman MT, Arnold AE. 2008. Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees. Mycological Research 112: 331-344.
34. Ivanova NV, deWaard J, Hebert PDN. 2006. An inexpensive, automationfriendly protocol for recovering high-quality DNA. Molecular Ecology Notes 6: 998-1002.
35. Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518.
36. Nag Raj TR. 1993. Coelomycetous anamorphs with appendage-bearing conidia. Mycologue Publications, Waterloo, Ontario.
37. Pattengale ND, Alipour M, Bininda-Emonds ORP, Moret BME, Stamatakis A. 2009. How many bootstrap replicates are necessary? Lecture Notes in Computer Science 5541: 184-200.
38. Quaedvlieg W, Verkley GJM, Shin H-D, Barreto RW, Alfenas AC, et al. 2013. Sizing up Septoria. Studies in Mycology 75: 307-390.
39. Rayner RW. 1970. A mycological colour chart. Commonwealth Mycological Institute, Kew, UK.
40. Riccioni L, Manning M, Valvassori M, Haegi A, Casanato S, Spinelli R. 2007. A new disease: leader die-back in Actinidia chinensis Hort16A in Italy. Acta Horticulturae 753: 669-676.
41. Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, et al. 2009. A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1-15.
42. Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, et al. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proceedings of the National Academy of Sciences 109: 6241-6246.
43. Silva M da, Cerniglia CE, Pothuluri JV, Canhos VP, Esposito E. 2003a. Screening filamentous fungi isolated from estuarine sediments for the ability to oxidize polycyclic aromatic hydrocarbons. World Journal of Microbiology and Biotechnology 19: 399-405.
44. Silva M da, Umbuzeiro GA, Pfenning LH, Canhos VP, Esposito E. 2003b. Filamentous fungi isolated from estuarine sediments contaminated with industrial discharges. Soil and Sediment Contamination 12: 345-356.
45. Someya A, Yaguchi T, Udagawa S-I. 1997. Microsphaeropsis rugospora, a new species from Japanese soil. Mycoscience 38: 429-431.
46. Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 75: 758-771.
47. Stielow B, Bratek Z, Orczán KA, Rudnoy S, Hensel G, et al. 2011. Species delimitation in taxonomically difficult fungi: the case of Hymenogaster. PLoS ONE 6: e15614.
48. Stielow B, Bubner B, Hensel G, Munzenberger B, Hoffmann P, et al. 2010. The neglected hypogeous fungus Hydnotrya bailii Soehner (1959) is a widespread sister taxon of Hydnotrya tulasnei (Berk.) Berk. & Broome (1846). Mycological Progress 9: 195-203.
49. Sutton BC. 1974. Miscellaneous coelomycetes on Eucalyptus. Nova Hedwigia 25: 161-172.
50. Sutton BC. 1980. The Coelomycetes. Fungi imperfecti with pycnidia, acervuli and stromata. CMI, Kew, UK.
51. Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4. Sinauer Associates, Sunderland, Massachusetts.
52. Vaas LAI, Sikorski J, Michael V, Göker M, Klenk H-P. 2012. Visualization and curve-parameter estimation strategies for efficient exploration of Phenotype Microarray kinetics. PLoS ONE 7: e34846.
53. Verkley GJM, Quaedvlieg W, Shin HD, Crous PW. 2013. A new approach to species delimitation in Septoria. Studies in Mycology 75: 213-305.
54. Verkley GJM, Silva M da, Wicklow DT, Crous PW. 2004. Paraconiothyrium, a new genus to accommodate the mycoparasite Coniothyrium minitans, anamorphs of Paraphaeosphaeria, and four new species. Studies in Mycology 50: 323-335.
55. Vu TD, Eberhardt U, Szöke S, Groenewald M, Robert V. 2012. A laboratory information management system for DNA barcoding workflows. Integrative Biology 4: 744-755.
56. White TJ, Bruns TD, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds), PCR Protocols: a guide to methods and applications: 315-322. Academic Press, New York, USA.
57. Wollenweber HW, Hochapfel H. 1937. Beitrage zur Kenntnis parasitarer und saprophtischer Pilze. IV. Z. Parasitenkunde 9: 600-638.
58. Zhang Y, Crous PW, Schoch CL, Hyde KD. 2012. Pleosporales. Fungal Diversity 53: 1-221.
59. Zhang Y, Schoch CL, Fournier J, Crous PW, Gruyter J de, et al. 2009. Multilocus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Studies in Mycology 64: 85-102.