Retraction: Next Generation Sequencing: Potential and Application in Drug Discovery (Scientific World Journal (2014) 2014 (802437) DOI: 10.1155/2014/802437);Next generation sequencing: Potential and application in drug discovery

The Scientific World Journal

Volumn 2014, Issue , 2014, Pages

  Yadav, Navneet Kumar ^a   Shukla, Pooja ^a,b   Omer, Ankur ^a,b   Pareek, Shruti ^c   Singh, R K ^a,b  

^a CENTRAL DRUG RESEARCH INSTITUTE   (India)

^b ACADEMY OF SCIENTIFIC AND INNOVATIVE RESEARCH ACSIR   (India)

^c JAIPUR NATIONAL UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; MESSENGER RNA; POLYACRYLAMIDE GEL; PYROPHOSPHATE; REGULATOR PROTEIN; SINGLE STRANDED DNA; UNTRANSLATED RNA;

BINDING SITE; BIOINFORMATICS; CHROMATIN; DNA SEQUENCE; DNA SYNTHESIS; DRUG DEVELOPMENT; FLUORESCENT IN SITU SEQUENCING; GENETIC PROCEDURES; HIGH THROUGHPUT SEQUENCING; HUMAN; HYBRIDIZATION; ION CURRENT; METAGENOMICS; NANOPORE; NANOPORE SEQUENCING; NEXT GENERATION SEQUENCING; NONHUMAN; POLONY SEQUENCING; PROCEDURES; PROTEIN DNA BINDING; PYROSEQUENCING; REVIEW; SEQUENCING BY HYBRIDIZATION; SEQUENCING BY LIGATION; SINGLE NUCLEOTIDE POLYMORPHISM;

DRUG DISCOVERY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SEQUENCE ANALYSIS, DNA;

EID: 84898848154     PISSN: 23566140     EISSN: 1537744X     Source Type: Journal    
DOI: 10.1155/2020/1757504     Document Type: Erratum

References (47)

1. F. Sanger, G. M. Air, B. G. Barrell et al., "Nucleotide sequence of bacteriophage ΦX174 DNA," Nature, vol. 265, no. 5596, pp. 687-695, 1977. (Pubitemid 8039446)
2. F. Sanger, S. Nicklen, and A. R. Coulson, "DNA sequencing with chain-terminating inhibitors," Proceedings of the National Academy of Sciences of the United States of America, vol. 74, no. 12, pp. 5463-5467, 1977.
3. A. M. Maxam andW. A. Gilbert, "New method for sequencing DNA," Proceedings of the National Academy of Sciences of the United States of America, vol. 74, no. 2, pp. 560-564, 1977.
4. F. Sanger and A. R. Coulson, "Nucleotide and amino acid sequences of Gene G of ΦX174," Journal of Molecular Biology, vol. 94, pp. 441-448, 1975.
5. M. L. Metzker, "Emerging technologies in DNA sequencing,"Genome Research, vol. 15, no. 12, pp. 1767-1776, 2005. (Pubitemid 41780407)
6. M. Margulies, M. Egholm, E.William et al., "Genome sequencing in microfabricated high-density picolitre reactors," Nature, vol. 437, pp. 376-380, 2005. (Pubitemid 41613494)
7. J. J. Shendure, G. J. Porreca, N. B. Reppas et al., "Molecular biology: accurate multiplex polony sequencing of an evolved bacterial genome," Science, vol. 309, no. 5741, pp. 1728-1732, 2005. (Pubitemid 41285943)
8. M. Ronaghi, S. Karamohamed, B. Pettersson, M. Uhl'en, and P. Nyr'en, "Real-time DNA sequencing using detection of pyrophosphate release," Analytical Biochemistry, vol. 242, no. 1, pp. 84-89, 1996. (Pubitemid 26378519)
9. M. Ronaghi, M. Uhl'en, and P. Nyr'en, "A sequencing method based on real-time pyrophosphate," Science, vol. 281, no. 5375, pp. 363-365, 1998. (Pubitemid 28340773)
10. J. Shendure, R. D. Mitra, C. Varma, and G. M. Church, "Advanced sequencing technologies: methods and goals," Nature Reviews Genetics, vol. 5, no. 5, pp. 335-344, 2004. (Pubitemid 38529405)
11. J. Shendure and H. Ji, "Next-generation DNA sequencing," Nature Biotechnology, vol. 26, no. 10, pp. 1135-1145, 2008.
12. R. D. Mitra and G. M. Church, "In situ localized amplification and contact replication of many individual DNA molecules," Nucleic Acids Research, vol. 27, no. 24, article e34, 1999.
13. S. Myllykangas, J. Buenrostro, and H. P. Ji, "Overview of sequencing technology platforms," Bioinformatics For High Throughput Sequencing, pp. 11-25, 2012.
14. J. B. Kim, G. J. Porreca, L. Song et al., "Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy," Science, vol. 316, no. 5830, pp. 1481-1484, 2007. (Pubitemid 46906615)
15. B. Lin, J.Wang, and Y. Cheng, "Recent patents and advances in the next-generation sequencing technologies," Recent Patents on Biomedical Engineering, vol. 1, pp. 60-67, 2008.
16. S. N. Lapidus, P. R. Buzby, and T. Harris, US20077169560, 2007.
17. P. R. Buzby, US20077220549, 2007.
18. H. Sun, US20070202521A1, 2007.
19. M. Rhee and M. A. Burns, "Nanopore sequencing technology: research trends and applications," Trends in Biotechnology, vol. 24, no. 12, pp. 580-586, 2006. (Pubitemid 44751218)
20. A. Meller and D. Branton, "Single molecule measurements of DNAtransport through a nanopore," Electrophoresis, vol. 23,pp. 2583-2591, 2002. (Pubitemid 35023698)
21. A.Meller, L.Nivon, E. Brandin, J.Golovchenko, andD. Branton, "Rapid nanopore discrimination between single polynucleotide molecules," Proceedings of the National Academy of Sciences of the United States of America, vol. 97, no. 3, pp. 1079-1084, 2000. (Pubitemid 30080815)
22. M. Rhee and M. A. Burns, "Nanopore sequencing technology: nanopore preparations," Trends in Biotechnology, vol. 25, no. 4, pp. 174-181, 2007. (Pubitemid 46413368)
23. J. Lagerqvist,M. Zwolak, andM. di Ventra, "FastDNA sequencing via transverse electronic transport," Nano Letters, vol. 6, no. 4, pp. 779-782, 2006.
24. Q. Zhao, G. Sigalov, V. Dimitrov et al., "Detecting SNPs using a synthetic nanopore," Nano Letters, vol. 7, no. 6, pp. 1680-1685, 2007. (Pubitemid 47140444)
25. D. Radoje, L. Ivan, B. Ivan, and C. Radomir, "Sequencing of megabase plus DNA by hybridization: theory of the method," Genomics, vol. 4, pp. 114-128, 1989.
26. R. Drmanac, S. Drmanac, G. Chui et al., "Sequencing by hybridization (SBH): advantages, achievements, and opportunities," Advances in Biochemical Engineering/Biotechnology, vol. 77, pp. 75-101, 2002.
27. A. Schirinzi, S. Drmanac, B. Dallapiccola et al., "Combinatorial sequencing-by-hybridization: analysis of the NF1 gene," Genetic Testing, vol. 10, no. 1, pp. 8-17, 2006.
28. S. Brenner, S. R. Williams, E. H. Vermaas et al., "In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs," Proceedings of the NationalAcademy of Sciences of theUnited States ofAmerica, vol. 97, no. 4, pp. 1665-1670, 2000. (Pubitemid 30118500)
29. V. Thakur and R. Varshney, "Challenges and strategies for next generation sequencing (NGS) data AR," Journal of Computer Science and Systems Biology, vol. 3, pp. 40-42, 2010.
30. J.Voisey andC. P.Morris, "SNPtechnologies for drug discovery: a current review," Current Drug Discovery Technologies, vol. 5, no. 3, pp. 230-235, 2008.
31. M. Samuel, B. T. Wilhelm, and J. B?ahler, "Next-generation sequencing: applications beyondGenomes," Biochemical Society Transactions, vol. 36, pp. 1091-1096, 2008.
32. U.Nagalakshmi, Z. Wang,K.Waern et al., "The transcriptional landscape of the yeast genome defined by RNA sequencing," Science, vol. 320, no. 5881, pp. 1344-1349, 2008. (Pubitemid 351929471)
33. M. Sultan, M. H. Schulz, H. Richard et al., "A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome," Science, vol. 321, no. 5891, pp. 956-960, 2008.
34. M. Kiriakidou, P. T. Nelson, A. Kouranov et al., "A combined computational-experimental approach predicts human microRNA targets," Genes and Development, vol. 18, no. 10, pp. 1165-1178, 2004. (Pubitemid 38669037)
35. J. Brennecke, A. A. Aravin, A. Stark et al., "Discrete small RNAgenerating loci as master regulators of transposon activity in Drosophila," Cell, vol. 128, no. 6, pp. 1089-1103, 2007. (Pubitemid 46427877)
36. S. Alexander, K. Pouya, P. Leopold et al., "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes," Genome Research, vol. 17, no. 12, pp. 1865-1879, 2007.
37. K. D. Kasschau, N. Fahlgren, E. J. Chapman et al., "Genomewide profiling and analysis of Arabidopsis siRNAs," PLoS Biology, vol. 5, no. 3, article 57, 2007.
38. G. Ramsingh, D. C. Koboldt, M. Trissal et al., "Complete characterization of the microRNAome in a patient with acute myeloid leukemia," Blood, vol. 116, no. 24, pp. 5316-5326, 2010.
39. C. A. Maher, C. Kumar-Sinha, X. Cao et al., "Transcriptome sequencing to detect gene fusions in cancer," Nature, vol. 458, no. 7234, pp. 97-101, 2009.
40. K. Chen and L. Pachter, "Bioinformatics for whole-genome shotgun sequencing of microbial communities," PLoS Computational Biology, vol. 1, no. 2, article e24, 2005.
41. D. H. Huson, A. F. Auch, J. Qi, and S. C. Schuster, "MEGAN analysis of metagenomic data," Genome Research, vol. 17, no. 3, pp. 377-386, 2007. (Pubitemid 46376747)
42. M. J. Solomon, P. L. Larsen, and A. Varshavsky, "Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene," Cell, vol. 53, no. 6, pp. 937-947, 1988.
43. E. R. Mardis, "The impact of next-generation sequencing technology on genetics," Trends in Genetics, vol. 24, no. 3, pp. 133-141, 2008.
44. S. M. Johnson, F. J. Tan, H. L. McCullough, D. P. Riordan, and A. Z. Fire, "Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin," Genome Research, vol. 16, no. 12, pp. 1505-1516, 2006. (Pubitemid 44878489)
45. T. S.Mikkelsen,M. Ku, D. B. Jaffe et al., "Genome-wide maps of chromatin state in pluripotent and lineage-committed cells," Nature, vol. 448, no. 7153, pp. 553-560, 2007. (Pubitemid 47206934)
46. D. S. Johnson, A. Mortazavi, R. M. Myers, and B. Wold, "Genome-wide mapping of in vivo protein-DNA interactions," Science, vol. 316, no. 5830, pp. 1497-1502, 2007. (Pubitemid 46906620)
47. S. Levy, G. Sutton, P. C.Ng et al., "The diploid genome sequence of an individual human," PLoS Biology, vol. 5, no. 10, article e254, 2007.