Self-assembling protein platform for direct quantification of circulating microRNAs in serum with total internal reflection fluorescence microscopy

Analytica Chimica Acta

Volumn 823, Issue , 2014, Pages 61-68

  Ho, See Lok ^a   Chan, Ho Man ^a   Wong, Ricky Ngok Shun ^a   Li, Hung Wing ^a  

^a HONG KONG BAPTIST UNIVERSITY   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

BODY FLUIDS; DISEASES; LOW NOISE AMPLIFIERS; PROTEINS; REFRACTIVE INDEX;

CONVENTIONAL TECHNIQUES; EXPRESSION PROFILING; FLUORESCENCE INTENSITIES; LOCKED NUCLEIC ACID; PSYCHOLOGICAL DISORDERS; SAMPLE CONSUMPTION; SINGLE-BASE MISMATCH; TOTAL INTERNAL REFLECTION FLUORESCENCE MICROSCOPY;

RNA;

AMYLOID BETA PROTEIN[1-40]; MICRORNA; MICRORNA 196A; NUCLEIC ACID; UNCLASSIFIED DRUG; NANOMATERIAL;

ARTICLE; BIOSENSOR; CANCER PATIENT; CONTROLLED STUDY; FLUORESCENCE MICROSCOPY; HUMAN; LABORATORY DEVICE; LIMIT OF DETECTION; NUCLEOTIDE SEQUENCE; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN ASSEMBLY; RNA ANALYSIS; SELF ASSEMBLING PROTEIN PLATFORM; SENSITIVITY ANALYSIS; TOTAL INTERNAL REFLECTION FLUORESCENCE MICROSCOPY; BLOOD; CHEMISTRY; PROCEDURES; SENSITIVITY AND SPECIFICITY;

HUMANS; MICRORNAS; MICROSCOPY, FLUORESCENCE; NANOSTRUCTURES; SENSITIVITY AND SPECIFICITY;

EID: 84898826438     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2014.03.020     Document Type: Article

References (34)

1. de Planell-Saguer M., Rodicio M.C. Analytical aspects of microRNA in diagnostics: a review. Analytica Chimica Acta 2011, 699(2):134-152.
2. Kwak P.B., Iwasaki S., Tomari Y. The microRNA pathway and cancer. Cancer Science 2010, 101(11):2309-2315.
3. Pritchard C.C., Cheng H.H., Tewari M. MicroRNA profiling: approaches and considerations. Nature Reviews Genetics 2012, 13(5):358-369.
4. Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297.
5. Esquela-Kerscher A., Slack F.J. Oncomirs-microRNAs with a role in cancer. Nature Reviews Cancer 2006, 6(4):259-269.
6. Chen X., Ba Y., Ma L.J., Cai X., Yin Y., Wang K.H., Guo J.G., Zhang Y.J., Chen J.N., Guo X., Li Q.B., Li X.Y., Wang W.J., Zhang Y., Wang J., Jiang X.Y., Xiang Y., Xu C., Zheng P.P., Zhang J.B., Li R.Q., Zhang H.J., Shang X.B., Gong T., Ning G., Wang J., Zen K., Zhang J.F., Zhang C.Y. Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Research 2008, 18(10):997-1006.
7. Wark A.W., Lee H.J., Corn R.M. Multiplexed detection methods for profiling microRNA expression in biological samples. Angewandte Chemie International Edition 2008, 47(4):644-652.
8. Lin S.L., Chang D., Ying S.Y. Asymmetry of intronic pre-miRNA structures in functional RISC assembly. Gene 2005, 356:32-38.
9. Tian T., Xiao H., Zhang X.L., Peng S., Zhang X.E., Guo S., Wang S.R., Liu S.M., Zhou X., Meyers C., Zhou X. Simultaneously sensitive detection of multiple miRNAs based on a strand displacement amplification. Chemical Communications 2012, 49(1):75-77.
10. Bustin S.A., Mueller R. Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis. Clinical Science 2005, 109(4):365-379.
11. Valoczi A., Hornyik C., Varga N., Burgyan J., Kauppinen S., Havelda Z. Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Research 2004, 32(22).
12. Lim L.P., Lau N.C., Garrett-Engele P., Grimson A., Schelter J.M., Castle J., Bartel D.P., Linsley P.S., Johnson J.M. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 2005, 433(7027):769-773.
13. Kilic T., Topkaya S.N., Ariksoysal D.O., Ozsoz M., Ballar P., Erac Y., Gozen O. Electrochemical based detection of microRNA, mir21 in breast cancer cells. Biosensors and Bioelectronics 2012, 38(1):195-201.
14. Wu X.Y., Chai Y.Q., Yuan R., Su H.L., Han J. A novel label-free electrochemical microRNA biosensor using Pd nanoparticles as enhancer and linker. Analyst 2013, 138(4):1060-1066.
15. Li C.P., Li Z.P., Jia H.X., Yan J.L. One-step ultrasensitive detection of microRNAs with loop-mediated isothermal amplification (LAMP). Chemical Communications 2011, 47(9):2595-2597.
16. Yin B.C., Liu Y.Q., Ye B.C. One-step, multiplexed fluorescence detection of micrornas based on duplex-specific nuclease signal amplification. Journal of the American Chemical Society 2012, 134(11):5064-5067.
17. Chan H.M., Chan L.S., Wong R.N.S., Li H.W. Direct quantification of single-molecules of microRNA by total internal reflection fluorescence microscopy. Analytical Chemistry 2010, 82(16):6911-6918.
18. Alhasan A.H., Kim D.Y., Daniel W.L., Watson E., Meeks J.J., Thaxton C.S., Mirkin C.A. Scanometric microRNA array profiling of prostate cancer markers using spherical nucleic acid-gold nanoparticle conjugates. Analytical Chemistry 2012, 84(9):4153-4160.
19. Weizmann Y., Chenoweth D.M., Swager T.M. DNA-CNT nanowire networks for DNA detection. Journal of the American Chemical Society 2011, 133(10):3238-3241.
20. Zhang G.J., Chua J.H., Chee R.E., Agarwal A., Wong S.M. Label-free direct detection of MiRNAs with silicon nanowire biosensors. Biosensors and Bioelectronics 2009, 24(8):2504-2508.
21. Dong H.F., Lei J.P., Ju H.X., Zhi F., Wang H., Guo W.J., Zhu Z., Yan F. Target-cell-specific delivery, imaging, and detection of intracellular microRNA with a multifunctional SnO2 nanoprobe. Angewandte Chemie International Edition 2012, 51(19):4607-4612.
22. Gao X.Y., Matsui H. Peptide-based nanotubes and their applications in bionanotechnology. Advanced Materials 2005, 17(17):2037-2050.
23. Chan H.M., Li H.W. Multifunctional encoded self-assembling protein nanofibrils as platform for high-throughput and multiplexed detection of biomolecules. Analytical Chemistry 2011, 83(24):9370-9377.
24. Pereira P.M., Marques J.P., Soares A.R., Carreto L., Santos M.A.S. MicroRNA expression variability in human cervical tissues. PLoS One 2010, 5(7).
25. Niinuma T., Suzuki H., Nojima M., Nosho K., Yamamoto H., Takamaru H., Yamamoto E., Maruyama R., Nobuoka T., Miyazaki Y., Nishida T., Bamba T., Kanda T., Ajioka Y., Taguchi T., Okahara S., Takahashi H., Nishida Y., Hosokawa M., Hasegawa T., Tokino T., Hirata K., Imai K., Toyota M., Shinomura Y. Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors. Cancer Research 2012, 72(5):1126-1136.
26. Szafranska A.E., Davison T.S., John J., Cannon T., Sipos B., Maghnouj A., Labourier E., Hahn S.A. MicroRNA expression alterations are linked to tumorigenesis and non-neoplastic processes in pancreatic ductal adenocarcinoma. Oncogene 2007, 26(30):4442-4452.
27. Chan H.M., Xiao L.H., Yeung K.M., Ho S.L., Zhao D., Chan W.H., Li H.W. Effect of surface-functionalized nanoparticles on the elongation phase of beta-amyloid (1-40) fibrillogenesis. Biomaterials 2012, 33(18):4443-4450.
28. Man B.Y.W., Chan H.M., Leung C.H., Chan D.S.H., Bai L.P., Jiang Z.H., Li H.W., Ma D.L. Group 9 metal-based inhibitors of beta-amyloid (1-40) fibrillation as potential therapeutic agents for Alzheimer's disease. Chemical Science 2011, 2(5):917-921.
29. Yang W.G., Wong Y., Ng O.T.W., Bai L.P., Kwong D.W.J., Ke Y., Jiang Z.H., Li H.W., Yung K.K.L., Wong M.S. Inhibition of beta-amyloid peptide aggregation by multifunctional carbazole-based fluorophores. Angewandte Chemie International Edition 2012, 51(8):1804-1810.
30. Xia T.B., SantaLucia J., Burkard M.E., Kierzek R., Schroeder S.J., Jiao X.Q., Cox C., Turner D.H. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 1998, 37(42):14719-14735.
31. Cosa G., Focsaneanu K.S., McLean J.R.N., McNamee J.P., Scaiano J.C. Photophysical properties of fluorescent DNA-dyes bound to single- and double-stranded DNA in aqueous buffered solution. Photochemistry and Photobiology 2001, 73(6):585-599.
32. Luo Z.H., Zhang L.Y., Li Z., Li X.Y., Li G., Yu H.B., Jiang C., Dai Y.F., Guo X.F., Xiang J.J., Li G.Y. An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma. BMC Medical Genomics 2012, 5.
33. Nuovo G.J. In situ detection of microRNAs in paraffin embedded, formalin fixed tissues and the co-localization of their putative targets. Methods 2010, 52(4):307-315.
34. Tang S.-Y., Huang G.-L., Lu Y., He Z.-W. Relationship between hsa-mir-196a-2 gene polymorphism and susceptibility and clinicopathologic factors of nasopharyngeal carcinoma in Hunan Han people. Journal of Guangdong Medical College 2013, 14(1):8-10.