Cover cropping alters the diet of arthropods in a banana plantation: A metabarcoding approach

PLoS ONE

Volumn 9, Issue 4, 2014, Pages

  Mollot, Gregory ^a,b   Duyck, Pierre François ^a,c   Lefeuvre, Pierre ^c   Lescourret, Françoise ^b   Martin, Jean François ^d   Piry, Sylvain ^d   Canard, Elsa ^a,e   Tixier, Philippe ^a,f  

^a CIRAD   (France)

^b Domaine Saint Paul   (France)

^c UNIVERSITÉ DE LA RÉUNION   (France)

^d CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

^e INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^f CATIE   (Costa Rica)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

AGROECOSYSTEM; ANT; ARTHROPOD; ARTICLE; BANANA; CAMPONOTUS SEXGUTTATUS; CAMPONOTUS SORDIDUS; COVER CROP; CROP PEST; DIPTERA; DNA BARCODING; DNA SEQUENCE; EARWIG; EUBORELLIA CARAIBEA; FORAGE CROP; JALYSUS SPINOSUS; NONHUMAN; PLANTATION; POLYTUS MELLERBORGI; PREDATOR; PREDATOR PREY INTERACTION; PYROSEQUENCING; SOIL PROPERTY; SOLENOPSIS GEMINATA; UROCHLOA DECUMBENS; WEED CONTROL; ANIMAL; BIOLOGICAL PEST CONTROL; CROP; DIET; INSECT; INSECT CONTROL; MUSA; PHYSIOLOGY; PREDATION; PROCEDURES;

ANIMALS; CROPS, AGRICULTURAL; DIET; INSECT CONTROL; INSECTS; MUSA; PEST CONTROL, BIOLOGICAL; PREDATORY BEHAVIOR;

EID: 84898790598     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0093740     Document Type: Article

References (50)

1. Tilman D, Cassman KG, Matson PA, Naylor R, Polasky S (2002) Agricultural sustainability and intensive production practices. Nature 418: 671-677.
2. Letourneau DK, Armbrecht I, Riviera BS, Lerma JM, Carmona EJ, et al. (2011) Does plant diversity benefit agroecosystems? A synthetic review. Ecol Appl 21: 9-21.
3. Simon S, Bouvier J-C, Debras J-F, Sauphanor B (2009) Biodiversity and pest management in orchad systems. A review. Agron Sustain Dev 30: 139-152.
4. Barberi P, Burgio G, Dinelli G, Moonen AC, Otto S, et al. (2010) Functional biodiversity in the agricultural landscape: relationships between weeds and arthropod fauna. Weed Research 50: 388-401.
5. Wise DH, Moldenhauer DM, Halaj J (2006) Using stable isotopes to reveal shifts in prey consumption by generalist predators. Ecol Appl 16: 865-876. (Pubitemid 44066053)
6. Blanchard JL, Jennings S, Law R, Castle MD, McCloghrie P, et al. (2009) How does abundance scale with body size in coupled size-structured food webs? J Anim Ecol 78: 270-280.
7. Cohen JE, Jonsson T, Carpenter SR (2003) Ecological community description using the food web, species abundance, and body size. Proc Natl Acad Sci U S A 100: 1781-1786. (Pubitemid 36254525)
8. Jennings S, Mackinson S (2003) Abundance-body mass relationships in size-structured food webs. Ecol Lett 6: 971-974. (Pubitemid 37365485)
9. Jonsson T, Cohen JE, Carpenter SR (2005) Food Webs, Body Size, and Species Abundance in Ecological Community Description. Adv Ecol Res. 1-84. (Pubitemid 43583938)
10. van Veen FJF, Müller CB, Pell JK, Godfray HCJ (2008) Food web structure of three guilds of natural enemies: predators, parasitoids and pathogens of aphids. 0021-8790 2008: 191-200.
11. Cabana G, Rasmussen JB (1996) Comparison of aquatic food chains using nitrogen isotopes. Proc Natl Acad Sci U S A 93: 10844-10847. (Pubitemid 26333077)
12. Fry B (1988) Food web structure on Georges Bank from stable C, N, and S isotopic compositions. Limnol Oceanogr 33: 1182-1190.
13. Peterson BJ, Howarth RW, Garritt RH (1985) Multiple stable isotopes used to trace the flow of organic matter in estuarine food webs. Science 227: 1361-1363.
14. 13C) tell about the food web of soil macro-invertebrates? Ecology 81: 852-864.
15. Post DM (2002) Using stable isotopes to estimate trophic position: Models, methods, and assumptions. Ecology 83: 703-718.
16. Vander Zanden MJ, Rasmussen JB (1999) Primary consumer delta C-13 and delta N-15 and the trophic position of aquatic consumers. Ecology 80: 1395-1404. (Pubitemid 29279940)
17. Vander Zanden MJ, Rasmussen JB (2001) Variation in delta N-15 and delta C-13 trophic fractionation: Implications for aquatic food web studies. Limnol Oceanogr 46: 2061-2066. (Pubitemid 34009955)
18. Harwood JD, Bostrom MR, Hladilek EE, Wise DH, Obrycki JJ (2007) An order-specific monoclonal antibody to Diptera reveals the impact of alternative prey on spider feeding behavior in a complex food web. Biol Control 41: 397-407. (Pubitemid 46702709)
19. Symondson WOC (2002) Molecular identification of prey in predator diets. Mol Ecol 11: 627-641.
20. King RA, Read DS, Traugott M, Symondson WOC (2008) Molecular analysis of predation: a review of best practice for DNA-based approaches. Mol Ecol 17: 947-963. (Pubitemid 351197358)
21. Harper GL, King RA, Dodd CS, Harwood JD, Glen DM, et al. (2005) Rapid screening of invertebrate predators for multiple prey DNA targets. Mol Ecol 14: 819-827. (Pubitemid 40346473)
22. Pompanon F, Deagle BE, Symondson WOC, Brown DS, Jarman SN, et al. (2012) Who is eating what: diet assessment using next generation sequencing. Mol Ecol 21: 1931-1950.
23. Scherber C, Eisenhauer N, Weisser WW, Schmid B, Voigt W, et al. (2010) Bottom-up effects of plant diversity on multitrophic interactions in a biodiversity experiment. Nature 468: 553-556.
24. Bugg RL, Waddington C (1994) Using cover crops to manage arthropods pesets of orchards - A review. Agric Ecosyst Environ 50: 11-28.
25. Mollot G, Tixier P, Lescourret F, Quilici S, Duyck PF (2012) New primary resource increases predation on a pest in a banana agroecosystem. Agricultural and Forest Entomology.
26. Hebert PDN, Cywinska A, Ball SL, DeWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B: Biological Sciences 270: 313-321. (Pubitemid 36228536)
27. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular marine Biology and Biotechnology 3: 294-297.
28. Meusnier I, Singer GAC, Landry JF, Hickey DA, Hebert PDN, et al. (2008) A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 9.
29. Leray M, Agudelo N, Mills SC, Meyer CP (2013) Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two coral reef fish species. Plos One 8.
30. Meglécz E, Piry S, Desmarais E, Galan M, Gilles A, et al. (2010) Sesame (SEquence Sorter & AMplicon Explorer): Genotyping based on high-throughput multiplex amplicon sequencing. Bioinformatics 27: 277-278.
31. Piry S, Guivier E, Realini A, Martin JF (2012) |SE|S|AM|E| Barcode: NGS-oriented software for amplicon characterization - application to species and environmental barcoding. Molecular Ecology Resources 12: 1151-1157.
32. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
33. Team RDC (2012) R: A language and environment for statistical computing. Vienna, Austria.
34. Yu DW, Ji YQ, Emerson BC, Wang XY, Ye CX, et al. (2012) Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. MEE 3: 613-623.
35. Valentini A, Pompanon F, Taberlet P (2009) DNA barcoding for ecologists. Trends Ecol Evol 24: 110-117.
36. Carreon-Martinez L, Heath DD (2010) Revolution in food web analysis and trophic ecology: Diet analysis by DNA and stable isotope analysis. Mol Ecol 19: 25-27.
37. Harris DJ (2003) Can you bank on GenBank? Trends Ecol Evol 18: 317-319.
38. Koppenhofer AM (1993) Egg predators of the banana weevil, Cosmopolites sordidus (Germar) (Coleoptera, Curculionidae) in western Kenya. J Appl Entomol 116: 352-357.
39. Abera-Kalibata AM, Hasyim A, Gold CS, Van Driesche R (2006) Field surveys in Indonesia for natural enemies of the banana weevil, Cosmopolites sordidus (Germar). Biol Control 37: 16-24. (Pubitemid 43340342)
40. Nickerson JC, Kay CAR, Buschman LL, Whitcomb WH (1977) The presence of Spissistilus festinus as a factor affecting egg predation by ants in soybeans. Fla Entomol 60: 193-199.
41. Risch SJ (1981) Ants as important predators of rootworm eggs in the neotropics. J Econ Entomol 74: 88-90.
42. Vandenberg H, Bagus A, Hassan K, Muhammad A, Zega S (1995) Predation and parasitism on eggs of two pod-sucking bugs, Nezara viridula and Pizodorus hybneri, in soybean. Int J Pest Manag 41: 134-142. (Pubitemid 26454918)
43. Dornhaus A, Holley JA, Pook VG, Worswick G, Franks NR (2008) Why do not all workers work? Colony size and workload during emigrations in the ant Temnothorax albipennis. Behav Ecol Sociobiol 63: 43-51.
44. Abera-Kalibata AM, Gold CS, Van Driesche R (2008) Experimental evaluation of the impacts of two ant species on banana weevil in Uganda. Biological Control 46: 147-157.
45. Gold CS, Pena JE, Karamura EB (2001) Biology and integrated pest management for the banana weevil Cosmopolites sordidus (Germar) (Coleoptera: Curculionidae). Integrated Pest Management Reviews 6: 79-155. (Pubitemid 36590262)
46. Perfecto I, Castañieras A (1998) Deployment of the predaceous ants and their conservation in agroecosystems. In: Barbosa P, editor. Conservation Biological Control. San Diego: Academic Press. 269-290.
47. Duyck PF, Lavigne A, Vinatier F, Achard R, Okolle JN, et al. (2011) Addition of a new resource in agroecosystems: Do cover crops alter the trophic positions of generalist predators? Basic Appl Ecol 12: 47-55.
48. Topham M, Beardsley JWJ (1975) Influence of nectar source plants on the New Guinea sugarcane weevil parasite, Lixophaga sphenophori (Villeneuve). Proc Hawaii Entomol Soc 12: 145-154.
49. Berlow EL, Neutel AM, Cohen JE, de Ruiter PC, Ebenman B, et al. (2004) Interaction strengths in food webs: issues and opportunities. J Anim Ecol 73: 585-598. (Pubitemid 38583755)
50. Dormann CF, Fruend J, Bluethgen N, B G (2009) Indices, graphs and null models: analyzing bipartite ecological networks. The Open Ecology Journal 2: 7-24.