-
1
-
-
13844295342
-
The variational Bayesian em algorithm for incomplete data: With application to scoring graphical model structures
-
Beal, M. and Z. Ghahramani (2003): "The variational Bayesian EM algorithm for incomplete data: with application to scoring graphical model structures, " Bayesian Statisctics, 7, 453-463.
-
(2003)
Bayesian Statisctics
, vol.7
, pp. 453-463
-
-
Beal, M.1
Ghahramani, Z.2
-
3
-
-
4043061882
-
Variational bayesian model selection for mixture distributions
-
Jaakkola, T., Richardson, T. (Eds.)
-
Corduneanu, A. and C. M. Bishop (2001): Variational bayesian model selection for mixture distributions. In: Jaakkola, T., Richardson, T. (Eds.), Artificial Intelligence and Statistics, 2001, pp. 27-34.
-
(2001)
Artificial Intelligence and Statistics
, vol.2001
, pp. 27-34
-
-
Corduneanu, A.1
Bishop, C.M.2
-
4
-
-
0002629270
-
Maximum likelihood from incomplete data via the em algorithm (with discussion)
-
Dempster, J. P., N. M. Laird, and D. Rubin (1977): "Maximum likelihood from incomplete data via the EM algorithm (with discussion), " Journal of the Royal Statistical Society B, 39, 1-38.
-
(1977)
Journal of the Royal Statistical Society B
, vol.39
, pp. 1-38
-
-
Dempster, J.P.1
Laird, N.M.2
Rubin, D.3
-
5
-
-
33750369868
-
Estimating marginal likelihoods for mixture and Markov switching models using bridge sampling techniques
-
Fruhwirth-Schnatter, S. (2004): "Estimating marginal likelihoods for mixture and Markov switching models using bridge sampling techniques, " The Econometrics Journal, 7, 143-167.
-
(2004)
The Econometrics Journal
, vol.7
, pp. 143-167
-
-
Fruhwirth-Schnatter, S.1
-
8
-
-
84863992953
-
Identifying differentially expressed transcripts from RNA-Seq data with biological variation
-
Glaus, P., A. Honkela, and M. Rattray (2012): "Identifying differentially expressed transcripts from RNA-Seq data with biological variation, " Bioinformatics, 28, 1721-1728.
-
(2012)
Bioinformatics
, vol.28
, pp. 1721-1728
-
-
Glaus, P.1
Honkela, A.2
Rattray, M.3
-
9
-
-
84898636842
-
-
arXiv, URL
-
Hensman, J., P. Glaus, A. Honkela, and M. Rattray (2013): Fast Approximate Inference of Transcript Expression Levels from RNA-seq Data. arXiv, URL http://arxiv.org/abs/1308.5953.
-
(2013)
Fast Approximate Inference of Transcript Expression Levels from RNA-seq Data
-
-
Hensman, J.1
Glaus, P.2
Honkela, A.3
Rattray, M.4
-
10
-
-
84877726166
-
Fast variational inference in the conjugate exponential family
-
Bartlett, P., Pereira, F., Burges, C., Bottou, L., Weinberger, K., (Eds.), URL
-
Hensman, J., M. Rattray, and N. D. Lawrence (2012) Fast variational inference in the conjugate exponential family. In: Bartlett, P., Pereira, F., Burges, C., Bottou, L., Weinberger, K., (Eds.), Advances in Neural Information Processing Systems 25, pp. 2897-2905, URL http://books.nips.cc/papers/files/ nips25/NIPS2012-1314.pdf.
-
(2012)
Advances in Neural Information Processing Systems
, vol.25
, pp. 2897-2905
-
-
Hensman, J.1
Rattray, M.2
Lawrence, N.D.3
-
12
-
-
22544479764
-
Markov Chain Monte Carlo methods and the label switching problem in Bayesian mixture modeling
-
Jasra, A., C. Holmes, and D. Stephens (2005): "Markov Chain Monte Carlo methods and the label switching problem in Bayesian mixture modeling, " Statistical Science, 20, 50-67.
-
(2005)
Statistical Science
, vol.20
, pp. 50-67
-
-
Jasra, A.1
Holmes, C.2
Stephens, D.3
-
13
-
-
0033225865
-
An introduction to variational methods for graphical models
-
Jordan, M., Z. Ghahramani, T. Jaakola, and L. Saul (1999): "An introduction to variational methods for graphical models, " Machine Learning, 37, 183-233.
-
(1999)
Machine Learning
, vol.37
, pp. 183-233
-
-
Jordan, M.1
Ghahramani, Z.2
Jaakola, T.3
Saul, L.4
-
14
-
-
78649714014
-
Analysis and design of RNA sequencing experiments for identifying isoform regulation
-
Katz, Y., E. Wang, E. Airoldi, and C. Burge (2010): "Analysis and design of RNA sequencing experiments for identifying isoform regulation, " Nat Methods, 7, 1009-1015.
-
(2010)
Nat Methods
, vol.7
, pp. 1009-1015
-
-
Katz, Y.1
Wang, E.2
Airoldi, E.3
Burge, C.4
-
15
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., C. Trapnell, M. Pop, and S. Salzberg (2009): "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, " Genome Biology, 10, R25.
-
(2009)
Genome Biology
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
16
-
-
77949507153
-
RNA-Seq gene expression estimation with read mapping uncertainty
-
Li, B., V. Ruotti, R. Stewart, J. Thomson, and D. CN. (2010): "RNA-Seq gene expression estimation with read mapping uncertainty, " Bioinformatics, 26, 493-500.
-
(2010)
Bioinformatics
, vol.26
, pp. 493-500
-
-
Li, B.1
Ruotti, V.2
Stewart, R.3
Thomson, J.4
Cn, D.5
-
17
-
-
33748644662
-
Probe-level measurement error improves accuracy in detecting differential gene expression
-
Liu, X., M. Milo, N. Lawrence, and M. Rattray (2006): "Probe-level measurement error improves accuracy in detecting differential gene expression, " Bioinformatics, 22, 2107-2113.
-
(2006)
Bioinformatics
, vol.22
, pp. 2107-2113
-
-
Liu, X.1
Milo, M.2
Lawrence, N.3
Rattray, M.4
-
18
-
-
33750274518
-
Bayesian modelling and inference on mixtures of distributions
-
Marin, J., K. Mengerson, and C. Robert (2005): "Bayesian modelling and inference on mixtures of distributions, " Handbook of Statistics, 25, 577-590.
-
(2005)
Handbook of Statistics
, vol.25
, pp. 577-590
-
-
Marin, J.1
Mengerson, K.2
Robert, C.3
-
19
-
-
50649089207
-
RNA-Seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni, J., C. Mason, S. Mane, M. Stephens, and Y. Gilad (2008): "RNA-Seq: an assessment of technical reproducibility and comparison with gene expression arrays, " Genome Research, 18, 1509-1517.
-
(2008)
Genome Research
, vol.18
, pp. 1509-1517
-
-
Marioni, J.1
Mason, C.2
Mane, S.3
Stephens, M.4
Gilad, Y.5
-
20
-
-
34247869715
-
Variational approximations in Bayesian model selection for finite mixture distributions
-
McGrory, C. and D. Titterington (2007): "Variational approximations in Bayesian model selection for finite mixture distributions, " Computational Statistics and Data Analysis, 51, 5352-5367.
-
(2007)
Computational Statistics and Data Analysis
, vol.51
, pp. 5352-5367
-
-
McGrory, C.1
Titterington, D.2
-
22
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., B. Williams, K. McCue, L. Schaeffer, and B. Wold (2008): "Mapping and quantifying mammalian transcriptomes by RNA-Seq, " Nat Methods, 5, 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
23
-
-
84883472446
-
TIGAR: Transcript isoform abundance estimation method with gapped alignment of RNA-seq data by variational Bayesian inference
-
Nariai, N., O. Hirose, K. Kojima, and M. Nagasaki (2013): "TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-seq data by variational Bayesian inference, " Bioinformatics, 29, 2292-2299.
-
(2013)
Bioinformatics
, vol.29
, pp. 2292-2299
-
-
Nariai, N.1
Hirose, O.2
Kojima, K.3
Nagasaki, M.4
-
25
-
-
0026839090
-
Multivariate stochastic approximation using a simultaneous perturbation gradient approximation
-
Spall, J. (1992): "Multivariate stochastic approximation using a simultaneous perturbation gradient approximation, " IEEE Transactions on Automatic Control, 37, 332-341.
-
(1992)
IEEE Transactions on Automatic Control
, vol.37
, pp. 332-341
-
-
Spall, J.1
-
26
-
-
0034290982
-
Adaptive stochastic approximation by the simultaneous perturbation method
-
Spall, J. (2000): "Adaptive stochastic approximation by the simultaneous perturbation method, " IEEE Transactions on Automatic Control, 45, 1839-1853.
-
(2000)
IEEE Transactions on Automatic Control
, vol.45
, pp. 1839-1853
-
-
Spall, J.1
-
27
-
-
84950758368
-
The calculation of posterior distributions by data augmentation
-
Tanner, M. and W. Wong (1987): "The calculation of posterior distributions by data augmentation, " Journal of the American Statistical Association, 82, 528-540.
-
(1987)
Journal of the American Statistical Association
, vol.82
, pp. 528-540
-
-
Tanner, M.1
Wong, W.2
-
28
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., L. Pachter, and S. Salzberg (2009): "TopHat: discovering splice junctions with RNA-Seq, " Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.3
-
29
-
-
79751531332
-
Haplotype and isoform specific expression estimation using multi-mapping RNA-Seq reads
-
Turro, E., S. Su, A. Goncalves, L. Coin, S. Richardson, and A. Lewin (2011): "Haplotype and isoform specific expression estimation using multi-mapping RNA-Seq reads, " Genome Biology, 12, R13.
-
(2011)
Genome Biology
, vol.12
-
-
Turro, E.1
Su, S.2
Goncalves, A.3
Coin, L.4
Richardson, S.5
Lewin, A.6
-
30
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., M. Gerstein, and M. Snyder (2009): "RNA-Seq: a revolutionary tool for transcriptomics, " Nat Rev Genet., 10, 57-63.
-
(2009)
Nat Rev Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
31
-
-
10044292323
-
Generalized Dirichlet distribution in Bayesian analysis
-
Wong, T. (1998): "Generalized Dirichlet distribution in Bayesian analysis, " Applied Mathematics and Computation, 97, 165-181.
-
(1998)
Applied Mathematics and Computation
, vol.97
, pp. 165-181
-
-
Wong, T.1
-
32
-
-
77949570275
-
Parameter estimation for generalized Dirichlet distributions from the sample estimates of the first and the second moments of random variables
-
Wong, T. (2010): "Parameter estimation for generalized Dirichlet distributions from the sample estimates of the first and the second moments of random variables, " Computational Statistics and Data Analysis, 54, 1756-1765.
-
(2010)
Computational Statistics and Data Analysis
, vol.54
, pp. 1756-1765
-
-
Wong, T.1
|