Evaluation of the AdvanSure™ real-time RT-PCR compared with culture and Seeplex RV15 for simultaneous detection of respiratory viruses

Diagnostic Microbiology and Infectious Disease

Volumn 79, Issue 1, 2014, Pages 14-18

  Cho, Chi Hyun ^a   Lee, Chang Kyu ^a   Nam, Myung Hyun ^a   Yoon, Soo Young ^a   Lim, Chae Seung ^a   Cho, Yunjung ^a   Kim, Young Kee ^a  

^a Korea University College of Medicine   (South Korea)

Author keywords

Multiplex real time PCR; Respiratory virus; Viral isolation

Indexed keywords

ADENOVIRUS; ARTICLE; BOCAVIRUS; CONTROLLED STUDY; CORONAVIRUS; CULTURE TECHNIQUE; DIAGNOSTIC TEST ACCURACY STUDY; INFLUENZA VIRUS A; INFLUENZA VIRUS B; INTERMETHOD COMPARISON; METAPNEUMOVIRUS; NONHUMAN; PARAINFLUENZA VIRUS; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY TRACT INFECTION; RESPIRATORY VIRUS; RHINOVIRUS; SENSITIVITY AND SPECIFICITY; STANDARD; VIRAL RESPIRATORY TRACT INFECTION; VIRUS CULTURE; VIRUS DETECTION; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR TYPING; MULTIPLEX POLYMERASE CHAIN REACTION; PROCEDURES; RESPIRATORY TRACT INFECTIONS; VIROLOGY; VIRUS; VIRUS DISEASES;

HUMANS; MOLECULAR TYPING; MULTIPLEX POLYMERASE CHAIN REACTION; REAL-TIME POLYMERASE CHAIN REACTION; RESPIRATORY TRACT INFECTIONS; SENSITIVITY AND SPECIFICITY; VIROLOGY; VIRUS CULTIVATION; VIRUS DISEASES; VIRUSES;

EID: 84898482577     PISSN: 07328893     EISSN: 18790070     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2014.01.016     Document Type: Article

References (28)

1. Arden K.E., Nissen M.D., Sloots T.P., Mackay I.M. New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia. J Med Virol 2005, 75:455-462.
2. Bellau-Pujol S., Vabret A., Legrand L., Dina J., Gouarin S., Petitjean-Lecherbonnier J., et al. Development of three multiplex RT-PCR assays for the detection of 12 respiratory RNA viruses. J Virol Methods 2005, 126:53-63.
3. Bibby D.F., McElarney I., Breuer J., Clark D.A. Comparative evaluation of the Seegene Seeplex RV15 and real-time PCR for respiratory virus detection. J Med Virol 2011, 83:1469-1475.
4. Bruijnesteijn van Coppenraet L.E., Swanink C.M., van Zwet A.A., Nijhuis R.H., Schirm J., Wallinga J.A., et al. Comparison of two commercial molecular assays for simultaneous detection of respiratory viruses in clinical samples using two automatic electrophoresis detection systems. J Virol Methods 2010, 169:188-192.
5. Caliendo A.M. Multiplex PCR, and emerging technologies for the detection of respiratory pathogens. Clin Infect Dis 2011, 52(Suppl. 4):S326-S330.
6. Choudhary M.L., Anand S.P., Heydari M., Rane G., Potdar V.A., Chadha M.S., et al. Development of a multiplex one step RT-PCR that detects eighteen respiratory viruses in clinical specimens and comparison with real time RT-PCR. J Virol Methods 2013, 189:15-19.
7. Coiras M.T., Perez-Brena P., Garcia M.L., Casas I. Simultaneous detection of influenza A, B, and C viruses, respiratory syncytial virus, and adenoviruses in clinical samples by multiplex reverse transcription nested-PCR assay. J Med Virol 2003, 69:132-144.
8. Couturier M.R., Barney T., Alger G., Hymas W.C., Stevenson J.B., Hillyard D., et al. Evaluation of the FilmArray(R) Respiratory Panel for clinical use in a large children's hospital. J Clin Lab Anal 2013, 27:148-154.
9. Drews S.J., Blair J., Lombos E., DeLima C., Burton L., Mazzulli T., et al. Use of the Seeplex RV Detection kit for surveillance of respiratory viral outbreaks in Toronto, Ontario, Canada. Ann Clin Lab Sci 2008, 38:376-379.
10. Feuillet F., Lina B., Rosa-Calatrava M., Boivin G. Ten years of human metapneumovirus research. J Clin Virol 2012, 53:97-105.
11. Gharabaghi F., Hawan A., Drews S.J., Richardson S.E. Evaluation of multiple commercial molecular and conventional diagnostic assays for the detection of respiratory viruses in children. Clin Microbiol Infect 2011, 17:1900-1906.
12. Gooskens J., Swaan C.M., Claas E.C., Kroes A.C. Rapid molecular detection of influenza outbreaks in nursing homes. J Clin Virol 2008, 41:7-12.
13. Greenberg S.B. Update on rhinovirus and coronavirus infections. Semin Respir Crit Care Med 2011, 32:433-446.
14. Hwang I.T. Cyclic-CMTA: an innovative concept in multiplex quantification. Seegene Bulletin 2012, 1:11-15.
15. Kapoor A., Simmonds P., Slikas E., Li L., Bodhidatta L., Sethabutr O., et al. Human bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infections. J Infect Dis 2010, 201:1633-1643.
16. Kehl S.C., Kumar S. Utilization of nucleic acid amplification assays for the detection of respiratory viruses. Clin Lab Med 2009, 29:661-671.
17. Kim H.K., Oh S.H., Yun K.A., Sung H., Kim M.N. Comparison of Anyplex II RV16 with the xTAG respiratory viral panel and Seeplex RV15 for detection of respiratory viruses. J Clinical Microbiol 2013, 51:1137-1141.
18. Lam W.Y., Yeung A.C., Tang J.W., Ip M., Chan E.W., Hui M., et al. Rapid multiplex nested PCR for detection of respiratory viruses. J Clin Microbiol 2007, 45:3631-3640.
19. Lee W.M., Grindle K., Pappas T., Marshall D.J., Moser M.J., Beaty E.L., et al. High-throughput, sensitive, and accurate multiplex PCR-microsphere flow cytometry system for large-scale comprehensive detection of respiratory viruses. J Clin Microbiol 2007, 45:2626-2634.
20. Martin E.T., Fairchok M.P., Stednick Z.J., Kuypers J., Englund J.A. Epidemiology of multiple respiratory viruses in childcare attendees. J Infect Dis 2013, 207:982-989.
21. Olofsson S., Brittain-Long R., Andersson L.M., Westin J., Lindh M. PCR for detection of respiratory viruses: seasonal variations of virus infections. Expert Rev Anti Infect Ther 2011, 9:615-626.
22. Rheem I., Park J., Kim T.H., Kim J.W. Evaluation of a multiplex real-time PCR assay for the detection of respiratory viruses in clinical specimens. Ann Lab Med 2012, 32:399-406.
23. Sanghavi S.K., Bullotta A., Husain S., Rinaldo C.R. Clinical evaluation of multiplex real-time PCR panels for rapid detection of respiratory viral infections. J Med Virol 2012, 84:162-169.
24. Thompson W.W., Shay D.K., Weintraub E., Brammer L., Cox N., Anderson L.J., et al. Mortality associated with influenza and respiratory syncytial virus in the United States. JAMA 2003, 289:179-186.
25. Vallieres E., Renaud C. Clinical and economical impact of multiplex respiratory virus assays. Diagn Microbiol Infect Dis 2013, 76:255-261.
26. Wang W., Ren P., Sheng J., Mardy S., Yan H., Zhang J., et al. Simultaneous detection of respiratory viruses in children with acute respiratory infection using two different multiplex reverse transcription-PCR assays. J Virol Methods 2009, 162:40-45.
27. Zhang G., Hu Y., Wang H., Zhang L., Bao Y., Zhou X. High incidence of multiple viral infections identified in upper respiratory tract infected children under three years of age in Shanghai. China. PloS One 2012, 7:e44568.
28. Zheng X., Todd K.M., Yen-Lieberman B., Kaul K., Mangold K., Shulman S.T. Unique finding of a 2009 H1N1 influenza virus-positive clinical sample suggests matrix gene sequence variation. J Clin Microbiol 2010, 48:665-666.