A phylogenetic examination of the primary anthocyanin production pathway of the Plantae

Botanical Studies

Volumn 55, Issue 1, 2014, Pages

  Campanella, James J ^a   Smalley, John V ^b   Dempsey, Maureen E ^a  

^a MONTCLAIR STATE UNIVERSITY   (United States)

^b Bergen Community College   (United States)

Author keywords

Anthocyanin; Anthocyanin synthase; Dihydroflavonol reductase; Flavonoid hydroxylase; Glucosyltransferase; Molecular evolution

Indexed keywords

EID: 84898478433     PISSN: 1817406X     EISSN: None     Source Type: Journal    
DOI: 10.1186/1999-3110-55-10     Document Type: Article

References (46)

1. Altschul SF, Madden T, Schaffer A (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bendz G (1961) Moss anthocyanins. Acta Chem Scand 15:1185
3. Bonnett SAF, Ostle N, Freeman C (2010) Short-term effect of deep shade and enhanced nitrogen supply on Sphagnum capillifolium morphophysiology. Plant Ecol 207:347-358
4. Buchanan BB, Gruissem W, Jones RL (2000) Biochemistry and molecular biology of plants. American society of plant biology. Rockville, Maryland
5. Caputi L, Malnoy M, Goremykin V, Nikiforova S, Martens S (2012) A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land. Plant J 69(6):1030-1042
6. Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29(8):1969-1973
7. Duff RJ, Nickrent DL (1998) Phylogenetic relationships of land plants using mitochondrial small subunit rDNA sequences. Am J Bot 86:372-386
8. Dunn JL, Robinson SA (2006) Ultraviolet B screening potential is higher in two cosmopolitan moss species than in a co-occurring Antarctic endemic moss: implications of continuing ozone depletion. Glob Change Biol 12(12):2282-2296
9. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
10. Gausman HW (1983) Visible light reflectance, transmittance, and absorbance of differently pigmented cotton leaves. Remote Sens Environ 13(3):233-238
11. Grotewold E (2006) The genetics and biochemistry of floral pigments. Annu Rev Plant Biol 57:761-780
12. Guindon S, Dufayar JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59(3):307-321
13. Halbwirth H (2010) The creation and physiological relevance of divergent hydroxylation patterns in the flavonoid pathway. Int J Mol Sci 11:595-621
14. Harborne JB (1958) Spectral methods of characterizing anthocyanins. Biochem J 70(1):22-28
15. Harborne JB (1965) Anthocyanins in ferns. Nature 207:984-985
16. Harborne JB (1967) Comparative biochemistry of flavonoids. Academic Press, New York
17. Harborne JB (1979) Function of flavonoids in plants. Function of flavonoids in plants. In: Goodwin TW (ed) Chemistry and biochemistry of plant pigments. Academic Press, New York, pp 736-788
18. Herrmann K (2006) Flavonols and flavones in food plants. Inter J Food Sci Tech 11(5):433-448
19. Katoh M, Kuma M (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059-3066
20. Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiol 125:1198-1205
21. Li J, Ou-Lee TM, Raba R, Amundson RG, Last RL (1993) Arabidopsis flavonoid mutants are hypersensitive to UV-B irradiation. Plant Cell 5:171-179
22. Lu Y, Rausher MD (2003) Evolutionary rate variation in anthocyanin pathway genes. Mol Biol Evol 20(11):1844-1853
23. Markham KR (1988) Distribution of flavonoids in the lower plants and its evolutionary significance. In: Harborne JB (ed) The Flavonoids. Chapman and Hall, London, pp 427-468
24. Moore MJ, Bell CD, Soltis PS, Soltis DE (2007) Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc Natl Acad Sci USA 104 (49):19363-19368
25. Mueller LA, Walbot V (2001) Models for vacuolar sequestration of anthocyanins. Recent Adv Phytochem 35:297-312
26. Mues R (2002) Chemical constituents and biochemistry. In: Shaw AJ, Goffinet B (eds) Bryophyte biology. Cambridge University Press, New York
27. Neill SO, Gould KS (2003) Anthocyanins in leaves: light attenuators or antioxidants? Funct Plant Biol 30(8):865-873
28. Page RD (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
29. Post A (1990) Photoprotective pigment as an adaptive strategy in the Antarctic moss Ceratodon purpureus. Polar Biol 10:241-245
30. Pryer KM, Schuettpelz E, Wolf PG, Schneider H, Smith AR, Cranfill R R (2004) Phylogeny and evolution of ferns with a focus on early leptosporangiate divergences. Am J Bot 91(10):1582-1598
31. Rausher MD (2006) The evolution of flavonoids and their genes. In: Grotewold E (ed) The science of flavonoids. Springer Publishing, New York, pp 175-21
32. Rausher MD, Miller RE, Tiffin P (1999) Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway. Mol Biol Evol 16 (2):266-274
33. Rozema J, Bjorn LO, Bornman JF, Gaberscik A, Hader DP, Germ M, Klisch M, Groniger A, Sinha RP, Lebert M, He YY, Buffoni-Hall R, DeBakker NVJ, Van De Staaij J, Meijkamp BB (2002) The role of UV-B radiation in aquatic and terrestrial ecosystems- an experimental and functional analysis of the evolution of UV absorbing compounds. J Photoch Photobio B 66:2-12
34. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
35. Salomonson MG (1978) Adaptations for animal dispersal of one-seed juniper seeds. Oecologia 32:333-339
36. Seitz C, Eder C, Deiml B, Kellner S, Martens S, Forkmann G (2006) Cloning, functional identification and sequence analysis of flavonoid 3-hydroxylase and flavonoid 3,5-hydroxylase cDNAs reveals independent evolution of flavonoid 3,5-hydroxylase in the Asteraceae family. Plant Mol Biol 61:365-381
37. Shear WA (2000) The early development of terrestrial ecosystems. In: Gee H (ed) Shaking the tree: readings from nature in the history of life. University of Chicago Press, Chicago, pp 169-179
38. Stafford HA (1991) Flavonoid evolution: an enzymatic approach. Plant Physiol 96:680-685
39. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (21):2688-2690
40. Steyn WJ, Wand SJE, Holcroft DM, Jacobs G (2002) Anthocyanins in vegetative tissues: a proposed unified function in photoprotection. New Phytol 155:349-361
41. Takahashi A, Kosaku T, Ohnishi T (1991) Light-induced anthocyanin reduces the extent of damage to DNA in UV-irradiated Centaurea cyanus cells in culture. Plant Cell Physiol 32(4):541-547
42. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
43. Thompson JD, Gibson TJ, Plewniak F (1997) The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4872-4882
44. Trocine RP, Rice JD, Wells GN (1981) Inhibition of sea grass photosynthesis by ultraviolet-B radiation. Plant Physiol 68:74-81
45. Wolf L, Rizzini L, Stracke R, Ulm R, Rensing SA (2010) The molecular and physiological responses of Physcomitrella patens to ultraviolet-B radiation. Plant Physiol 153:1123-1134
46. Xue L, Zhang Y, Zhang T, Lizhe A, Wang X (2005) Effects of Enhanced ultraviolet-B radiation on algae and cyanobacteria. Crit Rev Microbiol 2:79-89