Persistence of within-species lineages: A neglected control of speciation rates

Evolution

Volumn 68, Issue 4, 2014, Pages 923-934

  Dynesius, Mats ^a   Jansson, Roland ^a  

^a UMEÅ UNIVERSITY   (Sweden)

Author keywords

Cladogenesis; Extinction; Speciation speed; Waiting time to speciation

Indexed keywords

DIVERGENCE; ENVIRONMENTAL FACTOR; EXTINCTION; GENOME; PERSISTENCE; PHYLOGENETICS; SPECIATION (BIOLOGY);

CELLULAR, SUBCELLULAR AND MOLECULAR BIOLOGICAL PHENOMENA AND FUNCTIONS; ENVIRONMENT; EVOLUTION; PHYLOGENY; SPECIES DIFFERENTIATION; SPECIES EXTINCTION;

BIOLOGICAL EVOLUTION; BIOLOGICAL PHENOMENA; ENVIRONMENT; EXTINCTION, BIOLOGICAL; GENETIC SPECIATION; PHYLOGENY;

EID: 84898059291     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/evo.12316     Document Type: Article

References (130)

1. Abellan, P., A. Millan, and I. Ribera 2009. Parallel habitat-driven differences in the phylogeographical structure of two independent lineages of Mediterranean saline water beetles. Mol. Ecol. 18:3885-3902.
2. Allen, A. P., J. H. Brown, and J. F. Gillooly 2002. Global biodiversity, biochemical kinetics, and the energetic-equivalence rule. Science 297:1545-1548.
3. Allmon, W. D. 1992. A causal analysis of stages in allopatric speciation. Pp. 219-257 in D. Futuyma and J. Antonovics, eds. Oxford surveys in evolutionary biology. Oxford Univ. Press, Oxford, U.K.
4. Allmon, W. D. 2001. Nutrients, temperature, disturbance, and evolution: a model for the late Cenozoic marine record of the western Atlantic. Palaeogeogr. Palaeoclimatol. Palaeoecol. 166:9-26.
5. Anacker, B. L. 2011. Phylogenetic patterns of endemism and diversity. Pp. 49-70 in S. Harrison and N. Rajakurana, eds. The evolution and ecology of a model system. University of California Press, Berkeley, MD.
6. Avise, J. C., D. Walker, and G. C. Johns 1998. Speciation durations and Pleistocene effects on vertebrate phylogeography. Proc. R. Soc. Lond. B 265:1707-1712.
7. Baldwin, B. G., and M. J. Sanderson 1998. Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proc. Natl. Acad. Sci. USA 95:9402-9406.
8. Barraclough, T. G., and S. Nee 2001. Phylogenetics and speciation. Trends Ecol. Evol. 16:391-399.
9. Bell, M. A. 1988. Stickleback fishes: bridging the gap between population biology and paleobiology. Trends Ecol. Evol. 3:320-324.
10. Bennett, K. D., P. C. Tzedakis, and K. J. Willis 1991. Quaternary refugia of North European trees. J. Biogeogr. 18:103-115.
11. Bininda-Emonds, O. R. P., M. Cardillo, K. E. Jones, R. D. E. MacPhee, R. M. D. Beck, R. Grenyer, S. A. Price, R. A. Vos, J. L. Gittleman, and A. Purvis 2007. The delayed rise of present-day mammals. Nature 446:507-512.
12. Bohonak, A. J. 1999. Dispersal, gene flow, and population structure. Q. Rev. Biol. 74:21-45.
13. Carnaval, A. C., and C. Moritz 2008. Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic forest. J. Biogeogr. 35:1187-1201.
14. Carnaval, A. C., M. J. Hickerson, C. F. B. Haddad, M. T. Rodrigues, and C. Moritz 2009. Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science 323:785-789.
15. Claramunt, S., E. P. Derryberry, J. V. Remsen, and R. T. Brumfield 2012. High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proc. R. Soc. Lond. B 279:1567-1574.
16. Clarke, A., and K. J. Gaston 2006. Climate, energy and diversity. Proc. R. Soc. Lond. B 273:2257-2266.
17. Colles, A., L. H. Liow, and A. Prinzing 2009. Are specialists at risk under environmental change? Neoecological, paleoecological and phylogenetic approaches. Ecol. Lett. 12:849-863.
18. Coope, G. R. 1979. Late Cenozoic fossil Coleoptera: evolution, biogeography, and ecology. Annu. Rev. Ecol. Syst. 10:247-267.
19. Cowling, R. M., and R. L. Pressey 2001. Rapid plant diversification: planning for an evolutionary future. Proc. Natl. Acad. Sci. USA 98:5452-5457.
20. Coyne, J. A., and H. A. Orr 1997. "Patterns of speciation in Drosophila" revisited. Evolution 51:295-303.
21. Coyne, J. A., and H. A. Orr 2004. Speciation. Sinauer Associates, Sunderland, MA.
22. Cronin, T. M. 1985. Speciation and stasis in marine Ostracoda: climatic modulation of evolution. Science 227:60-63.
23. Cronin, T. M. 1987. Speciation and cyclic climatic change. Pp. 333-342 in M. R. Rampino, J. E. Sanders, W. S. Newman, and L. L. Königsson, eds. Climate. history, periodicity and predictability. Nan Nostrand Reinholdt Company, New York.
24. Currie, D. J. 1991. Energy and large-scale patterns of animal-species and plant-species richness. Am. Nat. 137:27-49.
25. Dalén, L., V. Nyström, C. Valdiosera, M. Germonpre, M. Sablin, E. Turner, A. Angerbjörn, J. L. Arsuaga, and A. Götherström 2007. Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox. Proc. Natl. Acad. Sci. USA 104:6726-6729.
26. Darlington, P. J. 1943. Carabidae of mountains and islands: data on the evolution of isolated faunas, and on atrophy of wings. Ecol. Monogr. 13:37-61.
27. Davies, T. J., V. Savolainen, M. W. Chase, J. Moat, and T. G. Barraclough 2004. Environmental energy and evolutionary rates in flowering plants. Proc. R. Soc. Lond. B 271:2195-2200.
28. Davies, T. J., A. Purvis, and J. L. Gittleman 2009. Quaternary climate change and the geographic ranges of mammals. Am. Nat. 174:297-307.
29. Dres, M., and J. Mallet 2002. Host races in plant-feeding insects and their importance in sympatric speciation. Philos. Trans. R. Soc. Lond. B 357:471-492.
30. Dynesius, M., and R. Jansson 2000. Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations. Proc. Natl. Acad. Sci. USA 97:9115-9120.
31. Endler, J. A. 1982. Pleistocene forest refuges: fact or fancy? Pp. 641-657 in G. T. Prance, ed. Biological diversification in the tropics. Columbia Univ. Press, New York.
32. Etienne, R.S., and J. Rosindell 2012. Prolonging the past counteracts the pull of the present: protracted speciation can explain observed slowdowns in diversification. Syst. Biol. 61:204-213.
33. Evans, K. L., J. J. D. Greenwood, and K. J. Gaston 2005. Dissecting the species-energy relationship. Proc. R. Soc. Lond. B 272:2155-2163.
34. Feder, J. L., T. A. Hunt, and L. Bush 1993. The effects of climate, host-plant phenology and host fidelity on the genetics of apple and hwathorn infesting races of Rhagoletis pomonella. Entomol. Exp. Appl. 69:117-135.
35. Fitzpatrick, S. W., C. A. Brasileiro, C. F. B. Haddad, and K. R. Zamudio 2009. Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability. Mol. Ecol. 18:2877-2896.
36. Fjeldså, J., and J. C. Lovett 1997. Biodiversity and environmental stability. Biodiv. Conserv. 6:315-323.
37. Funk, D. J. 1998. Isolating a role for natural selection in speciation: host adaptation and sexual isolation in Neochlamisus bebbianae leaf beetles. Evolution 52:1744-1759.
38. Futuyma, D. J. 1987. On the role of species in anagenesis. Am. Nat. 130:465-473.
39. Futuyma, D. J. 2010. Evolutionary constraint and ecological consequences. Evolution 64:1865-1884.
40. Gavrilets, S. 2003. Models of speciation: what have we learned in 40 years? Evolution 57: 2197-2215
41. Gavrilets, S. 2004. Fitness landscapes and the origin of species. Princeton Univ. Press, Princeton, NJ.
42. Gavrilets, S., and A. Vose 2005. Dynamic patterns of adaptive radiation. Proc. Natl. Acad. Sci. USA 102:18040-18045.
43. Glazier, D. S. 1987. Toward a predictive theory of speciation: the ecology of isolate selection. J. Theor. Biol. 126:323-334.
44. Godin, J. G. J., and H. E. McDonough 2003. Predator preference for brightly colored males in the guppy: a viability cost for a sexually selected trait. Behav. Ecol. 14:194-200.
45. Goldblatt, P. 1997. Floristic diversity in the Cape Flora of South Africa. Biodivers. Conserv. 6:359-377.
46. Graham, C. H., C. Moritz, and S. E. Williams 2006. Habitat history improves prediction of biodiversity in rainforest fauna. Proc. Natl. Acad. Sci. USA 103:632-636.
47. Haffer, J. 1969. Speciation in Amazonian forest birds. Science 165:131-137.
48. Hampe, A., and A. S. Jump 2011. Climate relicts: past, present, future. Annu. Rev. Ecol. Evol. Syst. 42:313-333.
49. Harvey, P. H., R. M. May, and S. Nee 1994. Phylogenies without fossils. Evolution 48:523-529.
50. Harnik, P. G., C. Simpson, and J. L. Payne 2012. Long-term differences in extinction risk among the seven forms of rarity. Proc. R. Soc. Lond. B 279:4969-4976.
51. Harrison, R. G. 2012. The language of speciation. Evolution 66:3643-3657.
52. Hawkins, B. A., F. S. Albuquerque, M. B. Araujo, J. Beck, L. M. Bini, F. J. Cabrero-Sanudo, I. Castro-Parga, J. A. F. Diniz, D. Ferrer-Castan, R. Field, et al. 2007. A global evaluation of metabolic theory as an explanation for terrestrial species richness gradients. Ecology 88:1877-1888.
53. Hendry, A. P., J. K. Wenburg, P. Bentzen, E. C. Volk, and T. P. Quinn 2000. Rapid evolution of reproductive isolation in the wild: Evidence from introduced salmon. Science 290:516-518.
54. Hendry, A. P., P. Nosil, and L. H. Rieseberg 2007. The speed of ecological speciation. Funct. Ecol. 21:455-464.
55. Hewitt, G. M. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philos. Trans. R. Soc. Lond. B 359:183-195.
56. Higgie, M., S. Chenoweth, and M. W. Blows 2000. Natural selection and the reinforcement of mate recognition. Science 290:519-521.
57. Hoskin, C. J., M. Tonione, M. Higgie, J. B. MacKenzie, S. E. Williams, J. VanDerWal, and C. Moritz 2011. Persistence in peripheral refugia promotes phenotypic divergence and speciation in a rainforest frog. Am. Nat. 178:561-578.
58. Hughes, C., and R. Eastwood 2006. Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proc. Natl. Acad. Sci. USA 103:10334-10339.
59. Huston, M. A. 1979. A general hypothesis of species diversity. Am. Nat. 113:81-101.
60. Jansson, R. 2003. Global patterns in endemism explained by past climatic change. Proc. R. Soc. Lond. B 270:583-590.
61. Jansson, R., and M. Dynesius 2002. The fate of clades in a world of recurrent climatic change: Milankovitch oscillations and evolution. Annu. Rev. Ecol. Syst. 33:741-777.
62. Keith, D. A., H. R. Akcakaya, W. Thuiller, G. F. Midgley, R. G. Pearson, S. J. Phillips, H. M. Regan, M. B. Araujo, and T. G. Rebelo 2008. Predicting extinction risks under climate change: coupling stochastic population models with dynamic bioclimatic habitat models. Biol. Lett. 4:560-563.
63. Kisel, Y., and T. G. Barraclough 2010. Speciation has a spatial scale that depends on levels of gene flow. Am. Nat. 175:316-334.
64. Klak, C., G. Reeves, and T. Hedderson 2004. Unmatched tempo of evolution in Southern African semi-desert ice plants. Nature 427:63-65.
65. Knowles, L. L. 2001. Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshoppers. Mol. Ecol. 10:691-701.
66. Knowles, L. L., and B. C. Carstens 2007. Delimiting species without monophyletic gene trees. Syst. Biol. 56:887-895.
67. Konnert, M., and F. Bergmann 1995. The geographical distribution of genetic variation of Silver fir (Abies alba, Pinaceae) in relation to its migration history. Plant Syst. Evol. 196:19-30.
68. Kotiaho, J. S., V. Kaitala, A. Komonen, and J. Paivinen 2005. Predicting the risk of extinction from shared ecological characteristics. Proc. Natl. Acad. Sci. USA 102:1963-1967.
69. Leberg, P. L. 1991. Influence of fragmentation and bottlenecks on genetic divergence of wild turkey populations. Conserv. Biol. 5:522-530.
70. Lesica, P., R. Yurkewycz, and E. E. Crone 2006. Rare plants are common where you find them. Am. J. Bot. 93:454-459.
71. Lessios, H. A. 1998. The first stage of speciation as seen in organisms separated by the Isthmus of Panama. In D. J. Howard and S. H. Berlocher, eds. Endless forms: species and speciation. Oxford Univ. Press, New York.
72. Levin, D. A. 2000. The origin, expansion and demise of plant species. Oxford Univ. Press, Oxford, U.K.
73. Levin, D. A. 2005. Isolate selection and ecological speciation. Syst. Bot. 30: 233-241.
74. Levin, D. A., J. Francisco Ortega, and R. K. Jansen 1996. Hybridization and the extinction of rare plant species. Conserv. Biol. 10:10-16.
75. Linder, H. P. 2010. Gradual speciation in a global hotspot of plant diversity. Mol. Ecol. 19:4583-4585.
76. Magallón, S., and M. J. Sanderson 2001. Absolute diversification rates in angiosperm clades. Evolution 55:1762-1780.
77. Mallet, J. 2008. Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Philos. Trans. R. Soc. Lond. B 363:2971-2986.
78. Marten, A., M. Brändle, and R. Brandl 2006. Habitat type predicts genetic population differentiation in freshwater invertebrates. Mol. Ecol. 15:2643-2651.
79. Martin, P. R., and J. K. McKay 2004. Latitudinal variation in genetic divergence of populations and the potential for future speciation. Evolution 58:938-945.
80. Mayr, E. 1963. Animal species and evolution. The Belknap Press of Harvard University Press, Cambridge.
81. Mayr, E. 1982. The growth of biological thought. The Belknap Press of Harvard University Press, Cambridge.
82. McKinney, M. L. 1997. Extinction vulnerability and selectivity: combining ecological and paleontological views. Annu. Rev. Ecol. Syst. 28:495-516.
83. Moritz, C., C. J. Hoskin, J. B. MacKenzie, B. L. Phillips, M. Tonione, N. Silva, J. VanDerWal, S. E. Williams, and C. H. Graham 2009. Identification and dynamics of a cryptic suture zone in tropical rainforest. Proc. R. Soc. Lond. B 276:1235-1244.
84. Moussalli, A., C. Moritz, S. E. Williams, and A. C. Carnaval 2009. Variable responses of skinks to a common history of rainforest fluctuation: concordance between phylogeography and palaeo-distribution models. Mol. Ecol. 18:483-499.
85. Nee, S. 2006. Birth-death models in macroevolution. Ann. Rev. Ecol. Evol. Syst. 37:1-17.
86. Nee, S., E. C. Holmes, A. Rambaut, and P. H. Harvey 1995. Inferring population history from molecular phylogenies. Philos. Trans. R. Soc. Lond. B 349:25-31.
87. Norris, R. D., and P. M. Hull 2011. The temporal dimension of marine speciation. Evol. Ecol. 26:393-415.
88. Nosil, P., and C. P. Sandoval 2008. Ecological niche dimensionality and the evolutionary diversification of stick insects. PLoS ONE 3:e1907.
89. Nosil, P., D. J. Funk, and D. Ortiz-Barrientos 2009. Divergent selection and heterogeneous genomic divergence. Mol. Ecol. 18:375-402.
90. O'Brien, E. M. 1998. Water-energy dynamics, climate, and prediction of woody plant species richness: an interim general model. J. Biogeogr. 25:379-398.
91. Orr, H. A., and L. H. Orr 1996. Waiting for speciation: the effect of population subdivision on the time to speciation. Evolution 50:1742-1749.
92. Panhuis, T. M., R. Butlin, M. Zuk, and T. Tregenza 2001. Sexual selection and speciation. Trends Ecol. Evol. 16:364-371.
93. Pawar, S. S. 2005. Geographical variation in the rate of evolution: effect of available energy or fluctuating environment? Evolution 59:234-237.
94. Petit, R. J., I. Aguinagalde, J. L. de Beaulieu, C. Bittkau, S. Brewer, R. Cheddadi, R. Ennos, S. Fineschi, D. Grivet, M. Lascoux, et al. 2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300:1563-1565.
95. Quental, T. B., and C. R. Marshall 2010. Diversity dynamics: molecular phylogenies need the fossil record. Trends Ecol. Evol. 25:434-441.
96. Rabosky, D. L., and D. R. Matute 2013. Macroevolutionary speciation rates are decoupled from the evolution of intrinsic reproductive isolation in Drosophila and birds. Proc. Natl. Acad. Sci. USA 110: 15354-15359.
97. Rhymer, J. M., and D. Simberloff 1996. Extinction by hybridization and introgression. Annu. Rev. Ecol. Syst. 27:83-109.
98. Ricklefs, R. E., and E. Bermingham 2007. The causes of evolutionary radiations in archipelagoes: Passerine birds in the Lesser Antilles. Am. Nat. 169:285-297.
99. Rohde, K. 1992. Latitudinal gradients in species diversity-the search for the primary cause. Oikos 65:514-527.
100. Rosenblum, E. B., B. A. J. Sarver, J. W. Brown, S. D. Roches, K. M. Hardwick, T. D. Hether, J. M. Eastman, M. W. Pennell, and L. J. Harmon 2012. Goldilocks meets Santa Rosalia: an ephemeral speciation model explains patterns of diversification across time scales. Evol. Biol. 39:255-261.
101. Rosenzweig, M. L. 1995. Species diversity in space and time. Cambridge Univ. Press, Cambridge, U.K.
102. Rosindell J, S. J. Cornell, S. P. Hubbell, and R. S. Etienne 2010. Protracted speciation revitalizes the neutral theory of biodiversity. Ecol. Lett. 13: 716-727.
103. Roy, K., D. Jablonski, J. W. Valentine, and G. Rosenberg 1998. Marine latitudinal diversity gradients: tests of causal hypotheses. Proc. Natl. Acad. Sci. USA 95:3699-3702.
104. Rune, O. 1953. Plant life on serpentine and related rocks in the north of Sweden. Acta Phytogeogr. Suec. 31:1-139.
105. Rymer, P. D., J. C. Manning, P. Goldblatt, M. P. Powell, and V. Savolainen 2010. Evidence of recent and continuous speciation in a biodiversity hotspot: a population genetic approach in southern African gladioli (Gladiolus; Iridaceae). Mol. Ecol. 19:4765-4782.
106. Sandel, B., L. Arge, B. Dalsgaard, R. G. Davies, K. J. Gaston, W. J. Sutherland, and J. C. Svenning 2011. The influence of late Quaternary climate-change velocity on species endemism. Science 334:660-664.
107. Schemske, D. W. 2009. Biotic interactions and speciation in the tropics. Pp. 219-239 in R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Speciation and patterns of diversity. Cambridge Univ. Press, Cambridge, U.K.
108. Schluter, D. 1996. Ecological speciation in postglacial fishes. Philos. Trans. R. Soc. Lond. B 351:807-814.
109. Schluter, D. 2000. The ecology och adaptive radiation. Oxford Univ. Press, Oxford, U.K.
110. Seehausen, O. 2006. Conservation: losing biodiversity by reverse speciation. Curr. Biol. 16:R334-R337.
111. Sheldon, P. R. 1996. Plus ça change-a model for stasis and evolution in different environments. Paleogeogr. Paleoclimatol. Paleoecol. 127:209-227.
112. Srivastava, D. S., and J. H. Lawton 1998. Why more productive sites have more species: an experimental test of theory using tree-hole communities. Am. Nat. 152:510-529.
113. Stanley, S. M. 1979. Macroevolution. W. H. Freeman, San Francisco.
114. Stebbins, G. L. 1971. Chromosomal evolution in higher plants. Edward Arnold, Lond.
115. Taylor, E. B., J. W. Boughman, M. Groenenboom, M. Sniatynski, D. Schluter, and J. L. Gow 2006. Speciation in reverse: morphological and genetic evidence of the collapse of a three-spined stickleback (Gasterosteus aculeatus) species pair. Mol. Ecol. 15:343-355.
116. Templeton, A. R. 2008. The reality and importance of founder speciation in evolution. BioEssays 30:470-479.
117. Traveset, A., J. P. Gonzalez-Varo, and A. Valido 2012. Long-term demographic consequences of a seed dispersal disruption. Proc. R. Soc. Lond. B 279:3298-3303.
118. Verheyen, E., W. Salzburger, J. Snoeks, and A. Meyer 2003. Origin of the superflock of cichlid fishes from Lake Victoria, East Africa. Science 300:325-329.
119. Via, S. 1999. Reproductive isolation between sympatric races of pea aphids. I. Gene flow restriction and habitat choice. Evolution 53:1446-1457.
120. Via, S. 2009. Natural selection in action during speciation. Proc. Natl. Acad. Sci. USA 106:9939-9946.
121. Vonlanthen, P., D. Roy, A. G. Hudson, C. R. Largiader, D. Bittner, and O. Seehausen 2009. Divergence along a steep ecological gradient in lake whitefish (Coregonus sp.). J. Evol. Biol. 22:498-514.
122. Vrba, E. S. 1992. Mammals as a key to evolutionary theory. J. Mammal. 73:1-28.
123. Vucetich, J. A., T. A. Waite, L. Qvarnemark, and S. Ibarguen 2000. Population variability and extinction risk. Conserv. Biol. 14:1704-1714.
124. Wagner, C. E., L. J. Harmon, and O. Seehausen 2012. Ecological opportunity and sexual selection together predict adaptive radiation. Nature 487:366-U124.
125. Waldron, A. 2010. Lineages that cheat death: surviving the squeeze on range size. Evolution 64:2278-2292.
126. Webb, W. C., J. M. Marzluff, and K. E. Omland 2011. Random interbreeding between cryptic lineages of the Common Raven: evidence for speciation in reverse. Mol. Ecol. 20:2390-2402.
127. Williams, G. C. 1992. Natural selection: domains, levels, and challenges. Oxford Univ. Press, Oxford, U.K.
128. Wisheu, I. C., M. L. Rosenzweig, L. Olsvig-Whittaker, and A. Shmida 2000. What makes nutrient-poor Mediterranean heathlands so rich in plant diversity? Evol. Ecol. Res. 2:935-955.
129. Won, Y. J., A. Sivasundar, Y. Wang, and J. Hey 2005. On the origin of Lake Malawi cichlid species: a population genetic analysis of divergence. Proc. Natl. Acad. Sci. USA 102:6581-6586
130. Yoder, J. B., E. Clancey, S. Des Roches, J. M. Eastman, L. Gentry, W. Godsoe, T. J. Hagey, D. Jochimsen, B. P. Oswald, J. Robertson, et al. 2010. Ecological opportunity and the origin of adaptive radiations. J. Evol. Biol. 23:1581-1596.