메뉴 건너뛰기




Volumn 54, Issue 1, 2014, Pages 156-165

Functional Consequences of Splicing of the Antisense Transcript COOLAIR on FLC Transcription

Author keywords

[No Author keywords available]

Indexed keywords

COLD INDUCED LONG ANTISENSE INTRAGENIC RNA; COMPLEMENTARY RNA; HISTONE; LONG UNTRANSLATED RNA; POLYADENYLIC ACID; PROTEIN; PRP8 PROTEIN; UNCLASSIFIED DRUG; COOLAIR ANTISENSE TRANSCRIPT; MUTANT PROTEIN; VEGETABLE PROTEIN;

EID: 84898016021     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2014.03.026     Document Type: Article
Times cited : (214)

References (55)
  • 3
    • 30044441988 scopus 로고    scopus 로고
    • The human SWI/SNF subunit Brm is a regulator of alternative splicing
    • Batsché E., Yaniv M., Muchardt C. The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat. Struct. Mol. Biol. 2006, 13:22-29.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 22-29
    • Batsché, E.1    Yaniv, M.2    Muchardt, C.3
  • 4
    • 0037313183 scopus 로고    scopus 로고
    • A thermosensory pathway controlling flowering time in Arabidopsis thaliana
    • Blázquez M.A., Ahn J.H., Weigel D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nat. Genet. 2003, 33:168-171.
    • (2003) Nat. Genet. , vol.33 , pp. 168-171
    • Blázquez, M.A.1    Ahn, J.H.2    Weigel, D.3
  • 5
    • 0014690698 scopus 로고
    • Gene regulation for higher cells: a theory
    • Britten R.J., Davidson E.H. Gene regulation for higher cells: a theory. Science 1969, 165:349-357.
    • (1969) Science , vol.165 , pp. 349-357
    • Britten, R.J.1    Davidson, E.H.2
  • 6
    • 84857395611 scopus 로고    scopus 로고
    • Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
    • Bumgarner S.L., Neuert G., Voight B.F., Symbor-Nagrabska A., Grisafi P., van Oudenaarden A., Fink G.R. Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Mol. Cell 2012, 45:470-482.
    • (2012) Mol. Cell , vol.45 , pp. 470-482
    • Bumgarner, S.L.1    Neuert, G.2    Voight, B.F.3    Symbor-Nagrabska, A.4    Grisafi, P.5    van Oudenaarden, A.6    Fink, G.R.7
  • 7
    • 36048951040 scopus 로고    scopus 로고
    • Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S.cerevisiae
    • Camblong J., Iglesias N., Fickentscher C., Dieppois G., Stutz F. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S.cerevisiae. Cell 2007, 131:706-717.
    • (2007) Cell , vol.131 , pp. 706-717
    • Camblong, J.1    Iglesias, N.2    Fickentscher, C.3    Dieppois, G.4    Stutz, F.5
  • 12
    • 84873629024 scopus 로고    scopus 로고
    • Crystal structure of Prp8 reveals active site cavity of the spliceosome
    • Galej W.P., Oubridge C., Newman A.J., Nagai K. Crystal structure of Prp8 reveals active site cavity of the spliceosome. Nature 2013, 493:638-643.
    • (2013) Nature , vol.493 , pp. 638-643
    • Galej, W.P.1    Oubridge, C.2    Newman, A.J.3    Nagai, K.4
  • 14
    • 17844395704 scopus 로고    scopus 로고
    • Prp8 protein: at the heart of the spliceosome
    • Grainger R.J., Beggs J.D. Prp8 protein: at the heart of the spliceosome. RNA 2005, 11:533-557.
    • (2005) RNA , vol.11 , pp. 533-557
    • Grainger, R.J.1    Beggs, J.D.2
  • 16
    • 84875275808 scopus 로고    scopus 로고
    • On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE
    • Graur D., Zheng Y., Price N., Azevedo R.B., Zufall R.A., Elhaik E. On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE. Genome Biol. Evol. 2013, 5:578-590.
    • (2013) Genome Biol. Evol. , vol.5 , pp. 578-590
    • Graur, D.1    Zheng, Y.2    Price, N.3    Azevedo, R.B.4    Zufall, R.A.5    Elhaik, E.6
  • 17
  • 18
    • 84872269907 scopus 로고    scopus 로고
    • Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination
    • Hazelbaker D.Z., Marquardt S., Wlotzka W., Buratowski S. Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination. Mol. Cell 2013, 49:55-66.
    • (2013) Mol. Cell , vol.49 , pp. 55-66
    • Hazelbaker, D.Z.1    Marquardt, S.2    Wlotzka, W.3    Buratowski, S.4
  • 19
    • 0345189367 scopus 로고    scopus 로고
    • Regulation of flowering time by histone acetylation in Arabidopsis
    • He Y., Michaels S.D., Amasino R.M. Regulation of flowering time by histone acetylation in Arabidopsis. Science 2003, 302:1751-1754.
    • (2003) Science , vol.302 , pp. 1751-1754
    • He, Y.1    Michaels, S.D.2    Amasino, R.M.3
  • 20
    • 33750814968 scopus 로고    scopus 로고
    • Antisense transcription controls cell fate in Saccharomyces cerevisiae
    • Hongay C.F., Grisafi P.L., Galitski T., Fink G.R. Antisense transcription controls cell fate in Saccharomyces cerevisiae. Cell 2006, 127:735-745.
    • (2006) Cell , vol.127 , pp. 735-745
    • Hongay, C.F.1    Grisafi, P.L.2    Galitski, T.3    Fink, G.R.4
  • 21
    • 76249122261 scopus 로고    scopus 로고
    • The spen family protein FPA controls alternative cleavage and polyadenylation of RNA
    • Hornyik C., Terzi L.C., Simpson G.G. The spen family protein FPA controls alternative cleavage and polyadenylation of RNA. Dev. Cell 2010, 18:203-213.
    • (2010) Dev. Cell , vol.18 , pp. 203-213
    • Hornyik, C.1    Terzi, L.C.2    Simpson, G.G.3
  • 22
    • 0034644643 scopus 로고    scopus 로고
    • Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time
    • Johanson U., West J., Lister C., Michaels S., Amasino R., Dean C. Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. Science 2000, 290:344-347.
    • (2000) Science , vol.290 , pp. 344-347
    • Johanson, U.1    West, J.2    Lister, C.3    Michaels, S.4    Amasino, R.5    Dean, C.6
  • 23
    • 84860871349 scopus 로고    scopus 로고
    • Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering
    • Jung J.H., Seo P.J., Ahn J.H., Park C.M. Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering. J.Biol. Chem. 2012, 287:16007-16016.
    • (2012) J.Biol. Chem. , vol.287 , pp. 16007-16016
    • Jung, J.H.1    Seo, P.J.2    Ahn, J.H.3    Park, C.M.4
  • 27
    • 84880152075 scopus 로고    scopus 로고
    • Alternative splicing and retinal degeneration
    • Liu M.M., Zack D.J. Alternative splicing and retinal degeneration. Clin. Genet. 2013, 84:142-149.
    • (2013) Clin. Genet. , vol.84 , pp. 142-149
    • Liu, M.M.1    Zack, D.J.2
  • 28
    • 10044244768 scopus 로고    scopus 로고
    • SiRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
    • Liu J., He Y.H., Amasino R., Chen X.M. siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. Genes Dev. 2004, 18:2873-2878.
    • (2004) Genes Dev. , vol.18 , pp. 2873-2878
    • Liu, J.1    He, Y.H.2    Amasino, R.3    Chen, X.M.4
  • 29
    • 35648982312 scopus 로고    scopus 로고
    • The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC
    • Liu F., Quesada V., Crevillén P., Bäurle I., Swiezewski S., Dean C. The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC. Mol. Cell 2007, 28:398-407.
    • (2007) Mol. Cell , vol.28 , pp. 398-407
    • Liu, F.1    Quesada, V.2    Crevillén, P.3    Bäurle, I.4    Swiezewski, S.5    Dean, C.6
  • 30
    • 62149152291 scopus 로고    scopus 로고
    • GAMETOPHYTIC FACTOR 1, involved in pre-mRNA splicing, is essential formegagametogenesis and embryogenesis in Arabidopsis
    • Liu M., Yuan L., Liu N.Y., Shi D.Q., Liu J., Yang W.C. GAMETOPHYTIC FACTOR 1, involved in pre-mRNA splicing, is essential formegagametogenesis and embryogenesis in Arabidopsis. J.Integr. Plant Biol. 2009, 51:261-271.
    • (2009) J.Integr. Plant Biol. , vol.51 , pp. 261-271
    • Liu, M.1    Yuan, L.2    Liu, N.Y.3    Shi, D.Q.4    Liu, J.5    Yang, W.C.6
  • 31
    • 74849099777 scopus 로고    scopus 로고
    • Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing
    • Liu F., Marquardt S., Lister C., Swiezewski S., Dean C. Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing. Science 2010, 327:94-97.
    • (2010) Science , vol.327 , pp. 94-97
    • Liu, F.1    Marquardt, S.2    Lister, C.3    Swiezewski, S.4    Dean, C.5
  • 32
    • 84859151759 scopus 로고    scopus 로고
    • Cotranscriptional role for Arabidopsis DICER-LIKE 4 in transcription termination
    • Liu F., Bakht S., Dean C. Cotranscriptional role for Arabidopsis DICER-LIKE 4 in transcription termination. Science 2012, 335:1621-1623.
    • (2012) Science , vol.335 , pp. 1621-1623
    • Liu, F.1    Bakht, S.2    Dean, C.3
  • 33
    • 84871390926 scopus 로고    scopus 로고
    • Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice
    • Lu T., Zhu C., Lu G., Guo Y., Zhou Y., Zhang Z., Zhao Y., Li W., Lu Y., Tang W., et al. Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice. BMC Genomics 2012, 13:721.
    • (2012) BMC Genomics , vol.13 , pp. 721
    • Lu, T.1    Zhu, C.2    Lu, G.3    Guo, Y.4    Zhou, Y.5    Zhang, Z.6    Zhao, Y.7    Li, W.8    Lu, Y.9    Tang, W.10
  • 35
    • 70349456510 scopus 로고    scopus 로고
    • Transcription elongation factor ELL2 directs immunoglobulin secretion in plasma cells by stimulating altered RNA processing
    • Martincic K., Alkan S.A., Cheatle A., Borghesi L., Milcarek C. Transcription elongation factor ELL2 directs immunoglobulin secretion in plasma cells by stimulating altered RNA processing. Nat. Immunol. 2009, 10:1102-1109.
    • (2009) Nat. Immunol. , vol.10 , pp. 1102-1109
    • Martincic, K.1    Alkan, S.A.2    Cheatle, A.3    Borghesi, L.4    Milcarek, C.5
  • 36
    • 84857751341 scopus 로고    scopus 로고
    • An active role for splicing in 3'-end formation
    • Martinson H.G. An active role for splicing in 3'-end formation. Wiley Interdiscip. Rev. RNA 2011, 2:459-470.
    • (2011) Wiley Interdiscip. Rev. RNA , vol.2 , pp. 459-470
    • Martinson, H.G.1
  • 37
    • 1842584883 scopus 로고    scopus 로고
    • RNA regulation: a new genetics?
    • Mattick J.S. RNA regulation: a new genetics?. Nat. Rev. Genet. 2004, 5:316-323.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 316-323
    • Mattick, J.S.1
  • 38
    • 0033133554 scopus 로고    scopus 로고
    • FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering
    • Michaels S.D., Amasino R.M. FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell 1999, 11:949-956.
    • (1999) Plant Cell , vol.11 , pp. 949-956
    • Michaels, S.D.1    Amasino, R.M.2
  • 39
    • 84868583242 scopus 로고    scopus 로고
    • The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA
    • Mozaffari-Jovin S., Santos K.F., Hsiao H.H., Will C.L., Urlaub H., Wahl M.C., Lührmann R. The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA. Genes Dev. 2012, 26:2422-2434.
    • (2012) Genes Dev. , vol.26 , pp. 2422-2434
    • Mozaffari-Jovin, S.1    Santos, K.F.2    Hsiao, H.H.3    Will, C.L.4    Urlaub, H.5    Wahl, M.C.6    Lührmann, R.7
  • 40
    • 0034602833 scopus 로고    scopus 로고
    • The WD-repeat protein pfs2p bridges two essential factors within the yeast pre-mRNA 3'-end-processing complex
    • Ohnacker M., Barabino S.M., Preker P.J., Keller W. The WD-repeat protein pfs2p bridges two essential factors within the yeast pre-mRNA 3'-end-processing complex. EMBO J. 2000, 19:37-47.
    • (2000) EMBO J. , vol.19 , pp. 37-47
    • Ohnacker, M.1    Barabino, S.M.2    Preker, P.J.3    Keller, W.4
  • 41
    • 34250743796 scopus 로고    scopus 로고
    • Transcriptional interferences in cis natural antisense transcripts of humans and mice
    • Osato N., Suzuki Y., Ikeo K., Gojobori T. Transcriptional interferences in cis natural antisense transcripts of humans and mice. Genetics 2007, 176:1299-1306.
    • (2007) Genetics , vol.176 , pp. 1299-1306
    • Osato, N.1    Suzuki, Y.2    Ikeo, K.3    Gojobori, T.4
  • 42
    • 55549143970 scopus 로고    scopus 로고
    • Structure and function of an RNase H domain at the heart of the spliceosome
    • Pena V., Rozov A., Fabrizio P., Lührmann R., Wahl M.C. Structure and function of an RNase H domain at the heart of the spliceosome. EMBO J. 2008, 27:2929-2940.
    • (2008) EMBO J. , vol.27 , pp. 2929-2940
    • Pena, V.1    Rozov, A.2    Fabrizio, P.3    Lührmann, R.4    Wahl, M.C.5
  • 43
    • 0038037805 scopus 로고    scopus 로고
    • Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time
    • Quesada V., Macknight R., Dean C., Simpson G.G. Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time. EMBO J. 2003, 22:3142-3152.
    • (2003) EMBO J. , vol.22 , pp. 3142-3152
    • Quesada, V.1    Macknight, R.2    Dean, C.3    Simpson, G.G.4
  • 44
    • 79952364016 scopus 로고    scopus 로고
    • Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
    • Saint-André V., Batsché E., Rachez C., Muchardt C. Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons. Nat. Struct. Mol. Biol. 2011, 18:337-344.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 337-344
    • Saint-André, V.1    Batsché, E.2    Rachez, C.3    Muchardt, C.4
  • 45
    • 0027984416 scopus 로고
    • Disruption of Morphogenesis and Transformation of the Suspensor in Abnormal Suspensor Mutants of Arabidopsis
    • Schwartz B.W., Yeung E.C., Meinke D.W. Disruption of Morphogenesis and Transformation of the Suspensor in Abnormal Suspensor Mutants of Arabidopsis. Development 1994, 120:3235-3245.
    • (1994) Development , vol.120 , pp. 3235-3245
    • Schwartz, B.W.1    Yeung, E.C.2    Meinke, D.W.3
  • 46
    • 0033101487 scopus 로고    scopus 로고
    • The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation
    • Sheldon C.C., Burn J.E., Perez P.P., Metzger J., Edwards J.A., Peacock W.J., Dennis E.S. The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation. Plant Cell 1999, 11:445-458.
    • (1999) Plant Cell , vol.11 , pp. 445-458
    • Sheldon, C.C.1    Burn, J.E.2    Perez, P.P.3    Metzger, J.4    Edwards, J.A.5    Peacock, W.J.6    Dennis, E.S.7
  • 47
    • 0038343397 scopus 로고    scopus 로고
    • FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition
    • Simpson G.G., Dijkwel P.P., Quesada V., Henderson I., Dean C. FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition. Cell 2003, 113:777-787.
    • (2003) Cell , vol.113 , pp. 777-787
    • Simpson, G.G.1    Dijkwel, P.P.2    Quesada, V.3    Henderson, I.4    Dean, C.5
  • 49
    • 84877354511 scopus 로고    scopus 로고
    • R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus
    • Sun Q., Csorba T., Skourti-Stathaki K., Proudfoot N.J., Dean C. R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus. Science 2013, 340:619-621.
    • (2013) Science , vol.340 , pp. 619-621
    • Sun, Q.1    Csorba, T.2    Skourti-Stathaki, K.3    Proudfoot, N.J.4    Dean, C.5
  • 50
    • 72049133207 scopus 로고    scopus 로고
    • Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
    • Swiezewski S., Liu F., Magusin A., Dean C. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 2009, 462:799-802.
    • (2009) Nature , vol.462 , pp. 799-802
    • Swiezewski, S.1    Liu, F.2    Magusin, A.3    Dean, C.4
  • 51
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • Wang K.C., Chang H.Y. Molecular mechanisms of long noncoding RNAs. Mol. Cell 2011, 43:904-914.
    • (2011) Mol. Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 52
    • 24644448635 scopus 로고    scopus 로고
    • Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
    • Wang X.J., Gaasterland T., Chua N.H. Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol. 2005, 6:R30.
    • (2005) Genome Biol. , vol.6
    • Wang, X.J.1    Gaasterland, T.2    Chua, N.H.3
  • 53
    • 34547233094 scopus 로고    scopus 로고
    • The Arabidopsis thaliana AT PRP39-1 gene, encoding a tetratricopeptide repeat protein with similarity to the yeast pre-mRNA processing protein PRP39, affects flowering time
    • Wang C., Tian Q., Hou Z., Mucha M., Aukerman M., Olsen O.A. The Arabidopsis thaliana AT PRP39-1 gene, encoding a tetratricopeptide repeat protein with similarity to the yeast pre-mRNA processing protein PRP39, affects flowering time. Plant Cell Rep. 2007, 26:1357-1366.
    • (2007) Plant Cell Rep. , vol.26 , pp. 1357-1366
    • Wang, C.1    Tian, Q.2    Hou, Z.3    Mucha, M.4    Aukerman, M.5    Olsen, O.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.