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Volumn 108, Issue 20, 2011, Pages 8508-8513

RNA 3′ processing functions of Arabidopsis FCA and FPA limit intergenic transcription

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DNA POLYMERASE; DOUBLE STRANDED DNA; MICRORNA; RNA; RNA BINDING PROTEIN; RNA BINDING PROTEIN FCA; RNA BINDING PROTEIN FPA; SMALL NUCLEOLAR RNA; TRANSFER RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA; ARABIDOPSIS PROTEIN; FLOWERING TIME CONTROL PROTEIN FCA, ARABIDOPSIS; FPA PROTEIN, ARABIDOPSIS; SPACER DNA;

EID: 79957709082     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1105334108     Document Type: Article
Times cited : (75)

References (36)
  • 1
    • 0025886455 scopus 로고
    • A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana
    • Koornneef M, Hanhart CJ, van der Veen JH (1991) A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol Gen Genet 229:57-66.
    • (1991) Mol Gen Genet , vol.229 , pp. 57-66
    • Koornneef, M.1    Hanhart, C.J.2    Van Der Veen, J.H.3
  • 2
    • 0035027844 scopus 로고    scopus 로고
    • Loss of FLOWERING LOCUS C activity eliminates the late-flowering phenotype of FRIGADA and autonomous pathway mutations but not responsiveness to vernalization
    • DOI 10.1105/tpc.13.4.935
    • Michaels SD, Amasino RM (2001) Loss of FLOWERING LOCUS C activity eliminates the late-flowering phenotype of FRIGIDA and autonomous pathway mutations but not responsiveness to vernalization. Plant Cell 13:935-941. (Pubitemid 32375911)
    • (2001) Plant Cell , vol.13 , Issue.4 , pp. 935-941
    • Michaels, S.D.1    Amasino, R.M.2
  • 4
    • 0034949084 scopus 로고    scopus 로고
    • FPA, a gene involved in floral induction in Arabidopsis, encodes a protein containing RNA-recognition motifs
    • DOI 10.1105/tpc.13.6.1427
    • Schomburg FM, Patton DA, Meinke DW, Amasino RM (2001) FPA, a gene involved in floral induction in Arabidopsis, encodes a protein containing RNA-recognition motifs. Plant Cell 13:1427-1436. (Pubitemid 32592913)
    • (2001) Plant Cell , vol.13 , Issue.6 , pp. 1427-1436
    • Schomburg, F.M.1    Patton, D.A.2    Meinke, D.W.3    Amasino, R.M.4
  • 5
    • 0038037805 scopus 로고    scopus 로고
    • Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time
    • DOI 10.1093/emboj/cdg305
    • Quesada V, Macknight R, Dean C, Simpson GG (2003) Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time. EMBO J 22:3142-3152. (Pubitemid 36758634)
    • (2003) EMBO Journal , vol.22 , Issue.12 , pp. 3142-3152
    • Quesada, V.1    Macknight, R.2    Dean, C.3    Simpson, G.G.4
  • 6
    • 76249122261 scopus 로고    scopus 로고
    • The spen family protein FPA controls alternative cleavage and polyadenylation of RNA
    • Hornyik C, Terzi LC, Simpson GG (2010) The spen family protein FPA controls alternative cleavage and polyadenylation of RNA. Dev Cell 18:203-213.
    • (2010) Dev Cell , vol.18 , pp. 203-213
    • Hornyik, C.1    Terzi, L.C.2    Simpson, G.G.3
  • 7
    • 0038343397 scopus 로고    scopus 로고
    • FY is an RNA 3′ end-processing factor that interacts with FCA to control the Arabidopsis floral transition
    • DOI 10.1016/S0092-8674(03)00425-2
    • Simpson GG, Dijkwel PP, Quesada V, Henderson I, Dean C (2003) FY is an RNA 3′ end-processing factor that interacts with FCA to control the Arabidopsis floral transition. Cell 113:777-787. (Pubitemid 36724941)
    • (2003) Cell , vol.113 , Issue.6 , pp. 777-787
    • Simpson, G.G.1    Dijkwel, P.P.2    Quesada, V.3    Henderson, I.4    Dean, C.5
  • 8
    • 66649124882 scopus 로고    scopus 로고
    • Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing
    • Manzano D, et al. (2009) Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing. Proc Natl Acad Sci USA 106: 8772-8777.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 8772-8777
    • Manzano, D.1
  • 9
    • 74849099777 scopus 로고    scopus 로고
    • Targeted 3′ processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing
    • Liu F, Marquardt S, Lister C, Swiezewski S, Dean C (2010) Targeted 3′ processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing. Science 327:94-97.
    • (2010) Science , vol.327 , pp. 94-97
    • Liu, F.1    Marquardt, S.2    Lister, C.3    Swiezewski, S.4    Dean, C.5
  • 10
    • 35148870536 scopus 로고    scopus 로고
    • Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing
    • DOI 10.1126/science.1146565
    • Bäurle I, Smith L, Baulcombe DC, Dean C (2007) Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing. Science 318: 109-112. (Pubitemid 47538044)
    • (2007) Science , vol.318 , Issue.5847 , pp. 109-112
    • Baurle, I.1    Smith, L.2    Baulcombe, D.C.3    Dean, C.4
  • 11
    • 48549092485 scopus 로고    scopus 로고
    • Functional redundancy and new roles for genes of the autonomous floral-promotion pathway
    • DOI 10.1104/pp.108.118927
    • Veley KM, Michaels SD (2008) Functional redundancy and new roles for genes of the autonomous floral-promotion pathway. Plant Physiol 147:682-695. (Pubitemid 352844315)
    • (2008) Plant Physiology , vol.147 , Issue.2 , pp. 682-695
    • Veley, K.M.1    Michaels, S.D.2
  • 12
    • 2442568473 scopus 로고    scopus 로고
    • The Paf1 complex has functions independent of actively transcribing RNA polymerase II
    • DOI 10.1016/S1097-2765(04)00257-6, PII S1097276504002576
    • Mueller CL, Porter SE, Hoffman MG, Jaehning JA (2004) The Paf1 complex has functions independent of actively transcribing RNA polymerase II. Mol Cell 14: 447-456. (Pubitemid 38648798)
    • (2004) Molecular Cell , vol.14 , Issue.4 , pp. 447-456
    • Mueller, C.L.1    Porter, S.E.2    Hoffman, M.G.3    Jaehning, J.A.4
  • 13
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • DOI 10.1126/science.1106910
    • Herr AJ, Jensen MB, Dalmay T, Baulcombe DC (2005) RNA polymerase IV directs silencing of endogenous DNA. Science 308:118-120. (Pubitemid 40471011)
    • (2005) Science , vol.308 , Issue.5718 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 14
    • 0028857136 scopus 로고
    • Mathematical formulae for the prediction of the residual beta cell function during the first two years of disease in children and adolescents with insulin-dependent diabetes mellitus
    • Klipper-Aurbach Y, et al. (1995) Mathematical formulae for the prediction of the residual beta cell function during the first two years of disease in children and adolescents with insulin-dependent diabetes mellitus. Med Hypotheses 45:486-490.
    • (1995) Med Hypotheses , vol.45 , pp. 486-490
    • Klipper-Aurbach, Y.1
  • 16
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oligonucleotide alignment program
    • DOI 10.1093/bioinformatics/btn025
    • Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: Short oligonucleotide alignment program. Bioinformatics 24:713-714. (Pubitemid 351321217)
    • (2008) Bioinformatics , vol.24 , Issue.5 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 17
    • 48249130774 scopus 로고    scopus 로고
    • At-TAX: A whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
    • Laubinger S, et al. (2008) At-TAX: A whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biol 9:R112.
    • (2008) Genome Biol , vol.9
    • Laubinger, S.1
  • 18
    • 67649666831 scopus 로고    scopus 로고
    • Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
    • Camblong J, et al. (2009) Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae. Genes Dev 23:1534-1545.
    • (2009) Genes Dev , vol.23 , pp. 1534-1545
    • Camblong, J.1
  • 19
    • 16244392766 scopus 로고    scopus 로고
    • Sense and antisense Foxl2 transcripts in mouse
    • DOI 10.1016/j.ygeno.2005.01.007
    • Cocquet J, Pannetier M, Fellous M, Veitia RA (2005) Sense and antisense Foxl2 transcripts in mouse. Genomics 85:531-541. (Pubitemid 40463688)
    • (2005) Genomics , vol.85 , Issue.5 , pp. 531-541
    • Cocquet, J.1    Pannetier, M.2    Fellous, M.3    Veitia, R.A.4
  • 20
    • 54049138948 scopus 로고    scopus 로고
    • Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
    • Pandey RR, et al. (2008) Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell 32:232-246.
    • (2008) Mol Cell , vol.32 , pp. 232-246
    • Pandey, R.R.1
  • 21
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcription in the mammalian transcriptome
    • Katayama S, et al. (2005) Antisense transcription in the mammalian transcriptome. Science 309:1564-1566.
    • (2005) Science , vol.309 , pp. 1564-1566
    • Katayama, S.1
  • 22
    • 72049133207 scopus 로고    scopus 로고
    • Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
    • Swiezewski S, Liu F, Magusin A, Dean C (2009) Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 462:799-802.
    • (2009) Nature , vol.462 , pp. 799-802
    • Swiezewski, S.1    Liu, F.2    Magusin, A.3    Dean, C.4
  • 23
    • 35648982312 scopus 로고    scopus 로고
    • The Arabidopsis RNA-Binding Protein FCA Requires a Lysine-Specific Demethylase 1 Homolog to Downregulate FLC
    • DOI 10.1016/j.molcel.2007.10.018, PII S1097276507007009
    • Liu F, et al. (2007) The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC. Mol Cell 28:398-407. (Pubitemid 350030571)
    • (2007) Molecular Cell , vol.28 , Issue.3 , pp. 398-407
    • Liu, F.1    Quesada, V.2    Crevillen, P.3    Baurle, I.4    Swiezewski, S.5    Dean, C.6
  • 24
    • 77958459763 scopus 로고    scopus 로고
    • Upf1 senses 3′UTR length to potentiate mRNA decay
    • Hogg JR, Goff SP (2010) Upf1 senses 3′UTR length to potentiate mRNA decay. Cell 143:379-389.
    • (2010) Cell , vol.143 , pp. 379-389
    • Hogg, J.R.1    Goff, S.P.2
  • 25
    • 46249092601 scopus 로고    scopus 로고
    • Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
    • DOI 10.1126/science.1155390
    • Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB (2008) Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites. Science 320:1643-1647. (Pubitemid 351931255)
    • (2008) Science , vol.320 , Issue.5883 , pp. 1643-1647
    • Sandberg, R.1    Neilson, J.R.2    Sarma, A.3    Sharp, P.A.4    Burge, C.B.5
  • 26
    • 68749113985 scopus 로고    scopus 로고
    • Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
    • Mayr C, Bartel DP (2009) Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138:673-684.
    • (2009) Cell , vol.138 , pp. 673-684
    • Mayr, C.1    Bartel, D.P.2
  • 28
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • Lister R, et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133:523-536.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1
  • 29
    • 60149110358 scopus 로고    scopus 로고
    • Pre-mRNA processing reaches back to transcription and ahead to translation
    • Moore MJ, Proudfoot NJ (2009) Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136:688-700.
    • (2009) Cell , vol.136 , pp. 688-700
    • Moore, M.J.1    Proudfoot, N.J.2
  • 30
    • 0034636551 scopus 로고    scopus 로고
    • Disruption of the plant gene MOM releases transcriptional silencing of methylated genes
    • DOI 10.1038/35012108
    • Amedeo P, Habu Y, Afsar K, Mittelsten Scheid O, Paszkowski J (2000) Disruption of the plant gene MOM releases transcriptional silencing of methylated genes. Nature 405:203-206. (Pubitemid 30313541)
    • (2000) Nature , vol.405 , Issue.6783 , pp. 203-206
    • Amedeo, P.1    Habu, Y.2    Afsar, K.3    Scheld, O.M.4    Paszkowski, J.5
  • 31
    • 78249236189 scopus 로고    scopus 로고
    • MORPHEUS' MOLECULE1 is required to prevent aberrant RNA transcriptional read-through in Arabidopsis
    • Zhou Y, Zhang J, Lin H, Guo G, Guo Y (2010) MORPHEUS' MOLECULE1 is required to prevent aberrant RNA transcriptional read-through in Arabidopsis. Plant Physiol 154: 1272-1280.
    • (2010) Plant Physiol , vol.154 , pp. 1272-1280
    • Zhou, Y.1    Zhang, J.2    Lin, H.3    Guo, G.4    Guo, Y.5
  • 32
    • 26944488324 scopus 로고    scopus 로고
    • From transcription to mRNA: PAF provides a new path
    • DOI 10.1016/j.molcel.2005.10.004, PII S1097276505016746
    • Rosonina E, Manley JL (2005) From transcription to mRNA: PAF provides a new path. Mol Cell 20:167-168. (Pubitemid 41484161)
    • (2005) Molecular Cell , vol.20 , Issue.2 , pp. 167-168
    • Rosonina, E.1    Manley, J.L.2
  • 33
    • 0035999375 scopus 로고    scopus 로고
    • Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA
    • DOI 10.1105/tpc.010456
    • Macknight R, et al. (2002) Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA. Plant Cell 14:877-888. (Pubitemid 34519609)
    • (2002) Plant Cell , vol.14 , Issue.4 , pp. 877-888
    • Macknight, R.1    Duroux, M.2    Laurie, R.3    Dijkwel, P.4    Simpson, G.5    Dean, C.6
  • 34
    • 66049104920 scopus 로고    scopus 로고
    • Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
    • Ji Z, Lee JY, Pan Z, Jiang B, Tian B (2009) Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc Natl Acad Sci USA 106:7028-7033.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 7028-7033
    • Ji, Z.1    Lee, J.Y.2    Pan, Z.3    Jiang, B.4    Tian, B.5
  • 36
    • 52649126232 scopus 로고    scopus 로고
    • Kismeth: Analyzer of plant methylation states through bisulfite sequencing
    • Gruntman E, et al. (2008) Kismeth: Analyzer of plant methylation states through bisulfite sequencing. BMC Bioinformatics 9:371.
    • (2008) BMC Bioinformatics , vol.9 , pp. 371
    • Gruntman, E.1


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