It's in your blood: Spectral biomarker candidates for urinary bladder cancer from automated FTIR spectroscopy

Journal of Biophotonics

Volumn 7, Issue 3-4, 2014, Pages 210-221

  Ollesch, Julian ^a   Heinze, Margot ^a   Heise, H Michael ^a   Behrens, Thomas ^a   Brüning, Thomas ^a   Gerwert, Klaus ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

Cancer biomarker; Dry film blood analysis; FTIR spectroscopy; High throughput; Urinary bladder cancer

Indexed keywords

BIOINFORMATICS; BLOOD; DISEASES; FILM PREPARATION; THROUGHPUT;

BLOOD ANALYSIS; CANCER BIOMARKERS; FTIR SPECTROSCOPY; HIGH THROUGHPUT; URINARY BLADDER CANCER;

FOURIER TRANSFORM INFRARED SPECTROSCOPY;

TUMOR MARKER;

AGED; ALGORITHM; AUTOMATION; BLOOD; DISCRIMINANT ANALYSIS; HUMAN; INFRARED SPECTROSCOPY; MIDDLE AGED; PROCEDURES; ROBOTICS; SIGNAL PROCESSING; SPECTROPHOTOMETRY; URINARY BLADDER NEOPLASMS; URINARY TRACT INFECTION;

AGED; ALGORITHMS; AUTOMATION; DISCRIMINANT ANALYSIS; HUMANS; MIDDLE AGED; ROBOTICS; SIGNAL PROCESSING, COMPUTER-ASSISTED; SPECTROPHOTOMETRY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TUMOR MARKERS, BIOLOGICAL; URINARY BLADDER NEOPLASMS; URINARY TRACT INFECTIONS;

EID: 84897962299     PISSN: 1864063X     EISSN: 18640648     Source Type: Journal    
DOI: 10.1002/jbio.201300163     Document Type: Article

References (42)

1. D. M. Parkin, Scand. J. Urol. Nephrol. Suppl. 42(s218), 12 (2008).
2. M. Ploeg, K. K. H. Aben, and L. A. Kiemeney, World J. Urol. 27, 289 (2009).
3. P. Boffetta, Scand. J. Urol. Nephrol. Suppl. 42(s218), 45 (2008).
4. S. M. Cohen, T. Shirai, and G. Steineck, Scand. J. Urol. Nephrol. Suppl. 205, 105 (2000).
5. M. Adibi, R. Youssef, S. F. Shariat, Y. Lotan, C. G. Wood, A. I. Sagalowsky, R. Zigeuner, F. Montorsi, C. Bolenz, and V. Margulis, Int. J. Urol. Off. J. Jpn. Urol. Assoc. 19, 1060 (2012).
6. J. L. Summers, J. S. Coon, R. M. Ward, W. H. Falor, A. W. Miller 3rd, and R. S. Weinstein, Cancer Res. 43, 934 (1983).
7. S. Ramakumar, J. Bhuiyan, J. A. Besse, S. G. Roberts, P. C. Wollan, M. L. Blute, and D. J. O'Kane, J. Urol. 161, 388 (1999).
8. I. Osman, Clin. Cancer Res. 12, 3374 (2006).
9. J. Villanueva, J. Clin. Invest. 116, 271 (2005).
10. L. C. Kompier, A. A. G. van Tilborg, and E. C. Zwarthoff, Urol. Oncol. 28, 91 (2010).
11. C. J. Marsit, D. C. Koestler, B. C. Christensen, M. R. Karagas, E. A. Houseman, and K. T. Kelsey, J. Clin. Oncol. 29, 1133 (2011).
12. N. Putluri, A. Shojaie, V. T. Vasu, S. K. Vareed, S. Nalluri, V. Putluri, G. S. Thangjam, K. Panzitt, C. T. Tallman, C. Butler, T. R. Sana, S. M. Fischer, G. Sica, D. J. Brat, H. Shi, G. S. Palapattu, Y. Lotan, A. Z. Weizer, M. K. Terris, S. F. Shariat, G. Michailidis, and A. Sreekumar, Cancer Res. 71, 7376 (2011).
13. A. A. G. van Tilborg, L. C. Kompier, I. Lurkin, R. Poort, S. El Bouazzaoui, K. van der Keur, T. Zuiverloon, L. Dyrskjot, T. F. Orntoft, M. J. Roobol, and E. C. Zwarthoff, PloS One 7, e43345 (2012).
14. M. R. Karagas, A. S. Andrew, H. H. Nelson, Z. Li, T. Punshon, A. Schned, C. J. Marsit, J. S. Morris, J. H. Moore, A. L. Tyler, D. Gilbert-Diamond, M.-L. Guerinot, and K. T. Kelsey, Hum. Genet. 131, 453 (2011).
15. J. Ollesch, S. L. Drees, H. M. Heise, T. Behrens, T. Brüning, and K. Gerwert, The Analyst 138, 4092 (2013).
16. J. Moecks, G. Kocherscheidt, W. Koehler, and W. H. Petrich, in: Proc SPIE, edited by A. Mahadevan-Jansen, M. G. Sowa, G. J. Puppels, Z. Gryczynski, T. Vo-Dinh, and J. R. Lakowicz (San Jose, CA, 2004), pp. 117-123.
17. G. G. Harrigan, R. H. LaPlante, G. N. Cosma, G. Cockerell, R. Goodacre, J. F. Maddox, J. P. Luyendyk, P. E. Ganey, and R. A. Roth, Toxicol. Lett. 146, 197 (2004).
18. B. H. Menze, W. Petrich, and F. A. Hamprecht, Anal. Bioanal. Chem. 387, 1801 (2007).
19. W. Petrich, K. B. Lewandrowski, J. B. Muhlestein, M. E. H. Hammond, J. L. Januzzi, E. L. Lewandrowski, B. Dolenko, J. Früh, W. Köhler, and R. Mischler, Analyst 134, 1092 (2009).
20. H.-U. Gremlich and B. Yan, Infrared and Raman Spectroscopy of Biological Materials (M. Dekker, New York, 2001).
21. M. Diem, J. M. Chalmers, and P. R. Griffiths, Vibrational Spectroscopy for Medical Diagnosis (John Wiley & Sons, Chichester, England; Hoboken, N.J., 2008).
22. P. Lasch and J. Kneipp, Biomedical Vibrational Spectroscopy (Wiley-Interscience, Hoboken, N.J., 2008).
23. G. Hoşafçi, O. Klein, G. Oremek, and W. Mäntele, Anal. Bioanal. Chem. 387, 1815 (2007).
24. P. Lasch, J. Schmitt, M. Beekes, T. Udelhoven, M. Eiden, H. Fabian, W. Petrich, and D. Naumann, Anal. Chem. 75, 6673-6678 (2003).
25. T. C. Martin, J. Moecks, A. Belooussov, S. Cawthraw, B. Dolenko, M. Eiden, J. Von Frese, W. Kohler, J. Schmitt, R. Somorjai, T. Udelhoven, S. Verzakov, and W. Petrich, The Analyst 129, 897 (2004).
26. D. I. Ellis and R. Goodacre, Analyst 131, 875 (2006).
27. M. Beekes, P. Lasch, and D. Naumann, Vet. Microbiol. 123, 305 (2007).
28. G. Bellisola and C. Sorio, Am. J. Cancer Res. 2, 1 (2012).
29. J. Trevisan, P. P. Angelov, P. L. Carmichael, A. D. Scott, and F. L. Martin, The Analyst 137, 3202 (2012).
30. P. Carmona, M. Molina, M. Calero, F. Bermejo-Pareja, P. Martínez-Martín, and A. Toledano, J. Alzheimers Dis. 34, 911 (2013).
31. K. Gajjar, J. Trevisan, G. Owens, P. J. Keating, N. J. Wood, H. F. Stringfellow, P. L. Martin-Hirsch, and F. L. Martin, Analyst 138, 3917 (2013).
32. D. Sheng, Y. Wu, X. Wang, D. Huang, X. Chen, and X. Liu, Spectrochim. Acta. A. Mol. Biomol. Spectrosc. 116, 365 (2013).
33. H. Peng, F. Long, and C. Ding, Pattern Anal. Mach. Intell. IEEE Trans. On 27, 1226 (2005).
34. C. Ding and H. Peng, J. Bioinform. Comput. Biol. 3, 185 (2005).
35. L. Breiman, Mach. Learn. 45, 5 (2001).
36. T. Hastie, R. Tibshirani, M. B. Eisen, A. Alizadeh, R. Levy, L. Staudt, W. C. Chan, D. Botstein, and P. Brown, Genome Biol. 1, RESEARCH0003 (2000).
37. B. H. Menze, B. M. Kelm, R. Masuch, U. Himmelreich, P. Bachert, W. Petrich, and F. A. Hamprecht, BMC Bioinformatics 10, 213 (2009).
38. P. R. Griffiths and J. A. De Haseth, Fourier Transform Infrared Spectrometry (Wiley-Interscience, Hoboken, N.J., 2007).
39. R. Genuer, J. M. Poggi, and C. Tuleau-Malot, Pattern Recognit. Lett. 31, 2225 (2010).
40. G. A. F. Seber, Multivariate Observations (Wiley-Interscience, Hoboken, N.J., 2004).
41. W. J. Krzanowski, Principles of Multivariate Analysis: a User's Perspective (Oxford Univ. Pr., Oxford [u.a.], 2008).
42. A. Liaw and M. Wiener, R News 2, 18 (2002).