Fourier-transform infrared spectroscopy coupled with a classification machine for the analysis of blood plasma or serum: A novel diagnostic approach for ovarian cancer

Analyst

Volumn 138, Issue 14, 2013, Pages 3917-3926

  Gajjar, Ketan ^a,b   Trevisan, Júlio ^a,c   Owens, Gemma ^b   Keating, Patrick J ^b   Wood, Nicholas J ^b   Stringfellow, Helen F ^b   Martin Hirsch, Pierre L ^b   Martin, Francis L ^a  

^a LANCASTER UNIVERSITY   (United Kingdom)

^b LANCASHIRE TEACHING HOSPITALS NHS FOUNDATION TRUST   (United Kingdom)

^c LANCASTER UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AGED; ARTICLE; BLOOD; BLOOD CELL; CANCER STAGING; CASE CONTROL STUDY; COMPARATIVE STUDY; EARLY DIAGNOSIS; ENDOMETRIUM TUMOR; FEMALE; HUMAN; INFRARED SPECTROSCOPY; METHODOLOGY; OVARY; OVARY TUMOR; PATHOLOGY; PILOT STUDY; PRINCIPAL COMPONENT ANALYSIS; REGRESSION ANALYSIS; SUPPORT VECTOR MACHINE; ENDOMETRIAL NEOPLASMS; OVARIAN NEOPLASMS; PROCEDURES;

AGED; BLOOD CELLS; CASE-CONTROL STUDIES; EARLY DETECTION OF CANCER; ENDOMETRIAL NEOPLASMS; FEMALE; HUMANS; LEAST-SQUARES ANALYSIS; NEOPLASM STAGING; OVARIAN NEOPLASMS; OVARY; PILOT PROJECTS; PRINCIPAL COMPONENT ANALYSIS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SUPPORT VECTOR MACHINES;

EID: 84891681982     PISSN: 00032654     EISSN: 13645528     Source Type: Journal    
DOI: 10.1039/c3an36654e     Document Type: Article

References (65)

1. L. Quaye, S. A. Gayther, S. J. Ramus, R. A. Di Cioccio, V. McGuire, E. Hogdall, C. Hogdall, J. Blaakr, D. F. Easton, A. Ponder, I. Jacobs, S. K. Kjaer, A. S. Whittemore, L. Pearce, P. D. Pharoah and H. Song, Clin. Cancer Res., 2008, 14, 5833-5839.
2. A. G. Renehan, M. Tyson, M. Egger, R. F. Heller and M. Zwahlen, Lancet, 2008, 371, 569-578.
3. Office for National Statistics, Cancer statistics registrations: registrations of cancer diagnosed in 2008, England, 2010, http://www. cancerresearchuk.org/cancer-info/cancerstats/, accessed on 6/10/12.
4. I. Vergote, F. Amant and D. Timmerman, Lancet Oncol., 2011, 12, 4-5.
5. I. Jacobs, A. Gentiy-Maharaj, M. Burnell, R. Manchanda, N. Singh, A. Sharma, A. Ryan, M. W. Seif, N. N. Amso, G. Turner, C. Brunell, G. Fletcher, R. Rangar, K. Ford, K. Godfrey, A. Lopes, D. Oram, J. Herod, K. Williamson, I. Scott, H. Jenkins, T. Mould, R. Woolas, J. Murdoch, S. Dobbs, S. Leeson, D. Cruickshank, S. J. Skates, L. Fallowfield, M. Parmar, S. Campbell and U. Menon, Lancet Oncol., 2011, 12, 38-48.
6. U. Menon, A. Gentiy-Maharaj, R. Hallett, A. Ryan, M. Burnell, A. Sharma, S. Lewis, S. Davies, S. Philpott, A. Lopes, K. Godfrey, D. Oram, J. Herod, K. Williamson, M. W. Seif, I. Scott, T. Mould, R. Woolas, J. Murdoch, S. Dobbs, N. N. Amso, S. Leeson, D. Cruickshank, A. McGuire, S. Campbell, L. Fallowfield, N. Singh, A. Dawnay, S. J. Skates, M. Parmar and I. Jacobs, Lancet Oncol, 2009, 10, 327-340.
7. P. Hartge and J. L. Speyer, J. Natl. Cancer Inst., 2012, 104, 82- 83.
8. K. Gajjar, G. Ogden, M. I. Mujahid and K. Razvi, ISRNO bstet. Gynecol., 2012, 2012, 754197.
9. N. Colombo, T. Van Gorp, G. Parma, F. Amant, G. Gatta, C. Sessa and I. Vergote, Crit. Rev. Oncol. Hematol., 2006, 60, 159-179.
10. S. E. Taylor and J. A. Green, Br. J. Cancer, 2012, 106, 1581- 1582.
11. S. M. Hanash, C. S. Baik and O. Kallioniemi, Nat. Rev. Clin. Oncol., 2011, 8, 142-150.
12. S. A. Leon, B. Shapiro, D. M. Sklaroff and M. J. Yaros, Cancer Res., 1977, 37, 646-650.
13. B. Shapiro, M. Chakrabarty, E. M. Cohn and S. A. Leon, Cancer, 1983, 51, 2116-2120.
14. A. K. Pathak, M. Bhutani, S. Kumar, A. Mohan and R. Guleria, Clin. Chem., 2006, 52, 1833-1842.
15. S. Jahr, H. Hentze, S. Englisch, D. Hardt, F. O. Fackelmayer, R. D. Hesch and R. Knippers, Cancer Res., 2001, 61, 1659-1665.
16. K. Pantel and C. Alix-Panabieres, Trends Mol. Med., 2010, 16, 398-406.
17. U. Neugebauer, T. Bocklitz, J. H. Clement, C. Krafft and J. Popp, Analyst, 2010, 135, 3178-3182.
18. Geigy Scientific Tables, in Physical Chemistry, Composition of the Blood, Haematology, Human Somatometric Data, ed. C. Lentner, 8th edn, 1984, pp. 359.
19. I. Jacobs, D. Oram, J. Fairbanks, J. Turner, C. Frost and J. G. Grudzinskas, Br. J. Obstet. Gynaecol., 1990, 97, 922- 929.
20. K. O. Lloyd and B. W. Yin, Tumour Biol., 2001, 22, 77-82.
21. S. S. Buys, E. Partridge, A. Black, C. C. Johnson, L. Lamerato,I. Isaacs, D. J. Reding, R. T. Greenlee, L. A. Yokochi, B. Kessel, E. D. Crawford, T. R. Church, G. L. Andriole, J. L. Weissfeld, M. N. Fouad, D. Chia, B. O'Brien, L. R. Ragard, J. D. Clapp, J. M. Rathmell, T. L. Riley, P. Hartge, P. F. Pinsky, C. S. Zhu, G. Izmirlian, B. S. Kramer, A. B. Miller, J. L. Xu, P. C. Prorok, J. K. Gohagan, C. D. Berg and P. P. Team, JAMA, J. Am. Med. Assoc., 2011, 305, 2295-2303.
22. P. Aggarwal and S. Kehoe, Maturitas, 2010, 67, 46-53.
23. G. Farias-Eisner, F. Su, T. Robbins, J. Kotlerman, S. Reddy and R. Farias-Eisner, Am. J. Obstet. Gynecol, 2010, 202(73), el-5.
24. E. Cocco, S. Bellone, K. El-Sahwi, M. Cargnelutti, N. Buza, F. A. Tavassoli, P. E. Schwartz, T. J. Rutherford, S. Pecorelli and A. D. Santin, Cancer, 2010, 116, 843-851.
25. C. S. Diefenbach, Z. Shah, A. Iasonos, R. R. Barakat, A. Levine, C. Aghajanian, P. Sabbatini, M. L. Hensley, J. Konner, W. Tew, D. Spriggs, M. Fleisher, H. Thaler and J. Dupont, Gynecol. Oncol., 2007, 104, 435-442.
26. G. Scambia, P. Benedetti Panici, G. Baiocchi, L. Perrone, S. Greggi and S. Mancuso, Gynecol. Oncol., 1988, 30, 265-273.
27. F. L. Martin, J. G. Kelly, V. Llabjani, P. L. Martin-Hirsch, I. I. Patel, J. Trevisan, N. J. Fullwood and M. J. Walsh, Nat. Protoc., 2010, 5, 1748-1760.
28. K. Gajjar, L. D. Heppenstall, W. Pang, K. M. Ashton, J. Trevisan, I. I. Patel, V. Llabjani, H. F. Stringfellow, P. L. Martin-Hirsch, T. Dawson and F. L. Martin, Anal. Methods, 2013, 5, 89-102.
29. A. T. Harris, A. Lungari, C. J. Needham, S. L. Smith, M. A. Lones, S. E. Fisher, X. B. Yang, N. Cooper, J. Kirkham, D. A. Smith, D. P. Martin-Hirsch and A. S. High, Head Neck Oncol., 2009, 1, 34.
30. C. Kendall, M. Isabelle, F. Bazant-Hegemark, J. Hutchings, L. Orr, J. Babrah, R. Baker and N. Stone, Analyst, 2009, 134, 1029-1045.
31. S. E. Taylor, K. T. Cheung, I. I. Patel, J. Trevisan, H. F. Stringfellow, K. M. Ashton, N. J. Wood, P. J. Keating, P. L. Martin-Hirsch and F. L. Martin, Br. J. Cancer, 2011, 104, 790-797.
32. M. J. Walsh, M. N. Singh, H. M. Pollock, L. J. Cooper, M. J. German, H. F. Stringfellow, N. J. Fullwood, Paraskevaidis R.T., P. L. Martin-Hirsch and F. L. Martin, Biochem. Biophys. Res. Commun., 2007, 352, 213-219.
33. J. G. Kelly, J. Trevisan, A. D. Scott, P. L. Carmichael, H. M. Pollock, P. L. Martin-Hirsch and F. L. Martin, J. Proteome Res., 2011, 10, 1437-1448.
34. H. Martens, S. W. Bruun, I. Adt, G. D. Sockalingum and A. Kohler, J. Chemom., 2006, 20, 402-417.
35. G. Janatsch, J. D. Kruse-Jarres, R. Marbach and H. M. Heise, Anal. Chem., 1989, 61, 2016-2023.
36. R. A. Shaw and H. H. Mantsch, in Encyclopedia of Analytical Chemistry, John Wiley & Sons Ltd, 2006.
37. P. Bassan, A. Kohler, H. Martens, J. Lee, H. J. Byrne, P. Dumas, E. Gazi, M. Brown, N. Clarke and P. Gardner, Analyst, 2010, 135, 268-277.
38. B. Bird, M. Miljkovic and M. Diem, J. Biophotonics, 2010, 3, 597-608.
39. R. O. Duda, P. E. Hart and D. G. Stork, Pattern Classification, Wiley, 2001.
40. P. R. Griffiths and J. A. Haseth, in Fourier Transform Infrared Spectroscopy, Wiley, Hoboken, New Jersey, USA, 2nd edn, 2007.
41. J. Trevisan, P. P. Angelov, P. L. Carmichael, A. D. Scott and L. Martin, Analyst, 2012, 137, 3202-3215.
42. L. I. Kuncheva, Combining pattern classifiers: methods and algorithms, Wiley, Hoboken, New Jersey, USA, 2004.
43. S. Kotsiantis, D. Kanellopoulos and P. Pintelas, GESTS Int. T. Comp. Sci. Eng., 2006, 30, 25-36.
44. M. Khanmohammadi, R. Nasiri, K. Ghasemi, S. Samani and A. Bagheri Garmarudi, .J. Cancer Res. Clin. Oncol., 2007, 133, 1001-1010.
45. M. Khanmohammadi, A. B. Garmarudi, K. Ghasemi, H. K. Jaliseh and A. Kaviani, Med. Oncol., 2009, 26, 292-297.
46. J. G. Kelly, P. P. Angelov, M. J. Walsh, H. M. Pollock, M. A. Pitt, P. L. Martin-Hirsch and F. L. Martin, Int. J. Computat. Intel. Res., 2008, 4, 392-401.
47. J. G. Kelly, P. P. Angelov, J. Trevisan, A. Vlachopoulou, E. Paraskevaidis, P. L. Martin-Hirsch and F. L. Martin, Anal. Bioanal. Chem., 2010, 398, 2191-2201.
48. M. Khanmohammadi, F. H. Rajabi, A. B. Garmarudi, R. Mohammadzadeh and R. Mohammadzadeh, Eur. J. Cancer Care, 2010, 19, 352-359.
49. M. Khanmohammadi, M. A. Ansari, A. B. Garmarudi,R. Hassanzadeh and G. Garoosi, Cancer Invest., 2007, 25, 397-404.
50. A. S. Haka, K. E. Shafer-Peltier, M. Fitzmauriee, J. Crowe, R. R. Dasari and M. S. Feld, Proc. Natl. Acad. Sci. U. S. A., 2005, 102, 12371-12376.
51. T. Hastie, J. H. Friedman and R. Tibshirani, The Elements of Statistical Learning, Springer, 2007.
52. A. Savitzky and M. J. E. Golay, Anal. Chem., 1964, 36, 1627- 1639.
53. C. Petibois, G. Cazorla, A. Cassaigne and G. Deleris, Clin. Chem., 2001, 47, 730-738.
54. J. Ramsay, G. Hooker and S. Graves, Functional Data Analysis with R and MATLAB, Springer, 2009.
55. I. Guyon, A. Elisseeff and J. Mach, Learn. Res., 2003, 3, 1157- 1182.
56. T. W. Rauber, M. M. Barata and A. S. Steiger-Garao, A toolbox for analysis and visualization of sensor data in supervision, Toulouse, France, 1993.
57. Feature extraction: Foundations and applications, ed. I. Guyon, S. Gunn, M. Nikravesh and L. A. Zadeh, Springer, New York, NY, 2006.
58. P. P. Angelov and Z. Xiaowei, IEEE Trans. Fuzzy Syst., 2008, 16, 1462-1475.
59. P. P. Angelov, D. P. Filev and N. Kasabov, Evolving Intelligent Systems: Methodology and Applications, Wiley, Hoboken, New Jersey, USA, 2010.
60. V. N. Vapnik, IEEE Trans. Neural network., 1999, 10, 988-999.
61. N. Cristianini and J. Shawe-Taylor, An introduction to support vector machines and other kernel-based learning methods, Cambridge, 2000.
62. J. Trevisan, P. P. Angelov, I. I. Patel, G. M. Najand, K. T. Cheung, V. Llabjani, H. M. Pollock, S. W. Bruce, K. Pant, P. L. Carmichael, A. D. Scott and F. L. Martin, Analyst, 2010, 135, 3266-3272.
63. B. Wang and N. Japkowicz, Knowl. Inform. Syst., 2010, 25, 1-20.
64. J. G. Kelly, M. N. Singh, H. F. Stringfellow, M. J. Walsh, J. M. Nicholson, F. Bahrami, K. M. Ashton, M. A. Pitt, P. L. Martin-Hirsch and F. L. Martin, Cancer Lett., 2009, 274, 208-217.
65. J. G. Kelly, K. T. Cheung, C. Martin, J. J. O'Leary, W. Prendiville, P. L. Martin-Hirsch and F. L. Martin, Clin. Chim. Acta, 2010, 411, 1027-1033.