-
1
-
-
84872361949
-
A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat
-
Verdier J., Dessaint F., Schneider C., Abirached-Darmency M. A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat. J. Exp. Bot. 2013, 64:459-470.
-
(2013)
J. Exp. Bot.
, vol.64
, pp. 459-470
-
-
Verdier, J.1
Dessaint, F.2
Schneider, C.3
Abirached-Darmency, M.4
-
2
-
-
84859073880
-
Using biologically interrelated experiments to identify pathway genes in Arabidopsis
-
Kim K., Jiang K., Teng S.L., Feldman L.J., Huang H. Using biologically interrelated experiments to identify pathway genes in Arabidopsis. Bioinformatics 2012, 28:815-822.
-
(2012)
Bioinformatics
, vol.28
, pp. 815-822
-
-
Kim, K.1
Jiang, K.2
Teng, S.L.3
Feldman, L.J.4
Huang, H.5
-
3
-
-
0034349348
-
Histological study of seed coat development in Arabidopsis thaliana
-
Beeckman T., De Rycke R., Viane R., Inzé D. Histological study of seed coat development in Arabidopsis thaliana. J. Plant Res. 2000, 113:139-148.
-
(2000)
J. Plant Res.
, vol.113
, pp. 139-148
-
-
Beeckman, T.1
De Rycke, R.2
Viane, R.3
Inzé, D.4
-
4
-
-
0034144394
-
Differentiation of mucilage secretory cells of the Arabidopsis seed coat
-
Western T.L., Skinner D.J., Haughn G.W. Differentiation of mucilage secretory cells of the Arabidopsis seed coat. Plant Physiol. 2000, 122:345-356.
-
(2000)
Plant Physiol.
, vol.122
, pp. 345-356
-
-
Western, T.L.1
Skinner, D.J.2
Haughn, G.W.3
-
5
-
-
0033919076
-
Arabidopsis seed coat development: morphological differentiation of the outer integument
-
Windsor J.B., Symonds V.V., Mendenhall J., Lloyd A.M. Arabidopsis seed coat development: morphological differentiation of the outer integument. Plant J. 2000, 22:483-493.
-
(2000)
Plant J.
, vol.22
, pp. 483-493
-
-
Windsor, J.B.1
Symonds, V.V.2
Mendenhall, J.3
Lloyd, A.M.4
-
6
-
-
4944242379
-
Cracks in the palisade cuticle of soybean seed coats correlate with their permeability to water
-
Ma F., Cholewa E.W.A., Mohamed T., Peterson C.A., Gijzen M. Cracks in the palisade cuticle of soybean seed coats correlate with their permeability to water. Ann. Bot. 2004, 94:213-228.
-
(2004)
Ann. Bot.
, vol.94
, pp. 213-228
-
-
Ma, F.1
Cholewa, E.W.A.2
Mohamed, T.3
Peterson, C.A.4
Gijzen, M.5
-
7
-
-
0032849723
-
Early development of the seed coat of soybean (Glycine max)
-
Miller S.S., Bowman L.A., Gijzen M., Miki B.L.A Early development of the seed coat of soybean (Glycine max). Ann. Bot. 1999, 84:297-304.
-
(1999)
Ann. Bot.
, vol.84
, pp. 297-304
-
-
Miller, S.S.1
Bowman, L.A.2
Gijzen, M.3
Miki, B.L.A.4
-
8
-
-
42449121728
-
Structural and permeability properties of the soybean seed coat
-
Qutob D., Fengshan M., Peterson C.A., Bernards M.A., Gijzen M. Structural and permeability properties of the soybean seed coat. Botany 2008, 86:219-227.
-
(2008)
Botany
, vol.86
, pp. 219-227
-
-
Qutob, D.1
Fengshan, M.2
Peterson, C.A.3
Bernards, M.A.4
Gijzen, M.5
-
10
-
-
0344083656
-
Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development
-
Debeaujon I., et al. Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development. Plant Cell 2003, 15:2514-2531.
-
(2003)
Plant Cell
, vol.15
, pp. 2514-2531
-
-
Debeaujon, I.1
-
11
-
-
77952382638
-
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors
-
Le B.H., et al. Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:8063-8070.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 8063-8070
-
-
Le, B.H.1
-
12
-
-
84873135198
-
Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed
-
Belmonte M.F., et al. Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:E435-E444.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
-
-
Belmonte, M.F.1
-
13
-
-
84894079622
-
Transcriptional circuitry underlying seed coat development in Arabidopsis
-
Khan D., Millar J.L., Girard I.J., Belmonte M.F. Transcriptional circuitry underlying seed coat development in Arabidopsis. Plant Sci. 2014, 219-220:51-60.
-
(2014)
Plant Sci.
, pp. 51-60
-
-
Khan, D.1
Millar, J.L.2
Girard, I.J.3
Belmonte, M.F.4
-
14
-
-
77950534120
-
Properties of the soybean seed coat cuticle change during development
-
Ranathunge K., et al. Properties of the soybean seed coat cuticle change during development. Planta 2010, 231:1171-1188.
-
(2010)
Planta
, vol.231
, pp. 1171-1188
-
-
Ranathunge, K.1
-
15
-
-
0000756097
-
Nutrition of ovule, embryo sac, and young embryo in soybean: an anatomical and autoradiographic study
-
Chamberlin M.A., Horner H.T., Palmer R.G. Nutrition of ovule, embryo sac, and young embryo in soybean: an anatomical and autoradiographic study. Can. J. Bot. 1993, 71:1153-1168.
-
(1993)
Can. J. Bot.
, vol.71
, pp. 1153-1168
-
-
Chamberlin, M.A.1
Horner, H.T.2
Palmer, R.G.3
-
16
-
-
34250661465
-
Using genomics to study legume seed development
-
Le B.H., et al. Using genomics to study legume seed development. Plant Physiol. 2007, 144:562-574.
-
(2007)
Plant Physiol.
, vol.144
, pp. 562-574
-
-
Le, B.H.1
-
17
-
-
1642444636
-
Modeling plant growth and development
-
Prusinkiewicz P. Modeling plant growth and development. Curr. Opin. Plant Biol. 2004, 7:79-83.
-
(2004)
Curr. Opin. Plant Biol.
, vol.7
, pp. 79-83
-
-
Prusinkiewicz, P.1
-
18
-
-
1942502343
-
Plant bioinformatics: from genome to phenome
-
Edwards D., Batley J. Plant bioinformatics: from genome to phenome. Trends Biotechnol. 2004, 22:232-237.
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 232-237
-
-
Edwards, D.1
Batley, J.2
-
19
-
-
9244220663
-
Bioinformatics: harvesting information for plant and crop science
-
King G.J. Bioinformatics: harvesting information for plant and crop science. Semin. Cell Dev. Biol. 2004, 15:721-731.
-
(2004)
Semin. Cell Dev. Biol.
, vol.15
, pp. 721-731
-
-
King, G.J.1
-
20
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J., et al. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
-
21
-
-
33745952391
-
Laser microdissection of plant tissue: what you see is what you get
-
Nelson T.S., Tausta L., Gandotra N., Liu T. Laser microdissection of plant tissue: what you see is what you get. Annu. Rev. Plant Biol. 2006, 57:181-201.
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 181-201
-
-
Nelson, T.S.1
Tausta, L.2
Gandotra, N.3
Liu, T.4
-
22
-
-
18044398601
-
Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf
-
Noriko I., Wildermuth M.C. Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf. Planta 2005, 221:9-16.
-
(2005)
Planta
, vol.221
, pp. 9-16
-
-
Noriko, I.1
Wildermuth, M.C.2
-
23
-
-
34347366346
-
Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem
-
Zhang X., et al. Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. PLoS Genet. 2007, 3:e101.
-
(2007)
PLoS Genet.
, vol.3
-
-
Zhang, X.1
-
24
-
-
82755171786
-
Laser microdissection unravels cell-type-specific transcription in arbuscular mycorrhizal roots, including CAAT-box transcription factor gene expression correlating with fungal contact and spread
-
Hogekamp C., et al. Laser microdissection unravels cell-type-specific transcription in arbuscular mycorrhizal roots, including CAAT-box transcription factor gene expression correlating with fungal contact and spread. Plant Physiol. 2011, 157:2023-2043.
-
(2011)
Plant Physiol.
, vol.157
, pp. 2023-2043
-
-
Hogekamp, C.1
-
25
-
-
43149086850
-
Laser microdissection-assisted analysis of the functional fate of iron deficiency-induced root hairs in cucumber
-
Santi S., Schmidt W. Laser microdissection-assisted analysis of the functional fate of iron deficiency-induced root hairs in cucumber. J. Exp. Bot. 2008, 59:697-704.
-
(2008)
J. Exp. Bot.
, vol.59
, pp. 697-704
-
-
Santi, S.1
Schmidt, W.2
-
26
-
-
84875431966
-
Gene expression analysis in microdissected shoot meristems of Brassica napus microspore-derived embryos with altered SHOOTMERISTEMLESS levels
-
Elhiti M., et al. Gene expression analysis in microdissected shoot meristems of Brassica napus microspore-derived embryos with altered SHOOTMERISTEMLESS levels. Planta 2013, 237:1065-1082.
-
(2013)
Planta
, vol.237
, pp. 1065-1082
-
-
Elhiti, M.1
-
27
-
-
78651081445
-
The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana
-
Deal R.B., Henikoff S. The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana. Nat. Protoc. 2011, 6:56-68.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 56-68
-
-
Deal, R.B.1
Henikoff, S.2
-
28
-
-
23144461287
-
Cell type - specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines
-
Birnbaum K., et al. Cell type - specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat. Methods 2005, 2:615-619.
-
(2005)
Nat. Methods
, vol.2
, pp. 615-619
-
-
Birnbaum, K.1
-
29
-
-
82255181307
-
Analysis of gene expression patterns during seed coat development in Arabidopsis
-
Dean G., et al. Analysis of gene expression patterns during seed coat development in Arabidopsis. Mol. Plant 2011, 4:1074-1091.
-
(2011)
Mol. Plant
, vol.4
, pp. 1074-1091
-
-
Dean, G.1
-
30
-
-
77955214742
-
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome
-
Severin A.J., et al. RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol. 2010, 10:1-16.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 1-16
-
-
Severin, A.J.1
-
31
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni J.C., Mason C.E., Mane S.M., Stephens M., Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 2008, 18:1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
32
-
-
38149109010
-
A high-resolution root spatiotemporal map reveals dominant expression patterns
-
Brady S.M., et al. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 2007, 318:801-806.
-
(2007)
Science
, vol.318
, pp. 801-806
-
-
Brady, S.M.1
-
33
-
-
84870724279
-
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks
-
Bassel G.W., et al. Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. Plant Cell 2012, 24:3859-3875.
-
(2012)
Plant Cell
, vol.24
, pp. 3859-3875
-
-
Bassel, G.W.1
-
34
-
-
79957876295
-
Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
-
Peng F.Y., Weselake R.J. Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis. BMC Genomics 2011, 12:286.
-
(2011)
BMC Genomics
, vol.12
, pp. 286
-
-
Peng, F.Y.1
Weselake, R.J.2
-
35
-
-
79959350055
-
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions
-
Bassel G.W., et al. Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:9709-9714.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 9709-9714
-
-
Bassel, G.W.1
-
36
-
-
84877655395
-
Seed-development programs a systems biology-based comparison between dicots and monocots
-
Sreenivasulu N., Wobus U. Seed-development programs a systems biology-based comparison between dicots and monocots. Annu. Rev. Plant Biol. 2013, 64:189-217.
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 189-217
-
-
Sreenivasulu, N.1
Wobus, U.2
-
37
-
-
84883230671
-
Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination
-
Dekkers B.J.W., et al. Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol. 2013, 163:205-215.
-
(2013)
Plant Physiol.
, vol.163
, pp. 205-215
-
-
Dekkers, B.J.W.1
-
38
-
-
73949091601
-
Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment
-
Humana Press Inc., New York, D.A. Belostotsky (Ed.)
-
Orlando D.A., Brady S.M., Koch J.D., Dinney J.R., Benfey P.N. Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods in Molecular Biology 2009, 57-77. Humana Press Inc., New York. D.A. Belostotsky (Ed.).
-
(2009)
Methods in Molecular Biology
, pp. 57-77
-
-
Orlando, D.A.1
Brady, S.M.2
Koch, J.D.3
Dinney, J.R.4
Benfey, P.N.5
-
39
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan X., et al. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 2011, 477:419-423.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
-
40
-
-
0035581108
-
Combinatorial interactions of two amino acids with a single base pair define target site specificity in plant dimeric homeodomain proteins
-
Tron A.E., Bertoncini C.W., Palena C.M., Chan R.L., Gonzalez D.H. Combinatorial interactions of two amino acids with a single base pair define target site specificity in plant dimeric homeodomain proteins. Nucleic Acids Res. 2001, 29:4866-4872.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4866-4872
-
-
Tron, A.E.1
Bertoncini, C.W.2
Palena, C.M.3
Chan, R.L.4
Gonzalez, D.H.5
-
41
-
-
0031803868
-
The GArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects
-
Tilly J.J., Allen D.W., Jack T. The GArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects. Development 1998, 125:1647-1657.
-
(1998)
Development
, vol.125
, pp. 1647-1657
-
-
Tilly, J.J.1
Allen, D.W.2
Jack, T.3
-
42
-
-
13744253144
-
MYB-bHLH-WD40 protein complex and the evolution of cellular diversity
-
Ramsay N.A., Glover B.J. MYB-bHLH-WD40 protein complex and the evolution of cellular diversity. Trends Plant Sci. 2005, 10:63-70.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 63-70
-
-
Ramsay, N.A.1
Glover, B.J.2
-
43
-
-
3843067588
-
TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana
-
Baudry A., et al. TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. Plant J. 2004, 39(3):366-380.
-
(2004)
Plant J.
, vol.39
, Issue.3
, pp. 366-380
-
-
Baudry, A.1
-
44
-
-
44449125014
-
Arabidopsis R2R3-MYB transcription factor AtMYB60 functions as a transcriptional repressor of anthocyanin biosynthesis in lettuce (Lactuca sativa)
-
Park J., et al. Arabidopsis R2R3-MYB transcription factor AtMYB60 functions as a transcriptional repressor of anthocyanin biosynthesis in lettuce (Lactuca sativa). Plant Cell Rep. 2008, 27:985-994.
-
(2008)
Plant Cell Rep.
, vol.27
, pp. 985-994
-
-
Park, J.1
-
45
-
-
61649109313
-
Environmental regulation of leaf colour in red 35S: PAP1 Arabidopsis thaliana
-
Rowan D.D., et al. Environmental regulation of leaf colour in red 35S: PAP1 Arabidopsis thaliana. New Phytol. 2009, 182:102-115.
-
(2009)
New Phytol.
, vol.182
, pp. 102-115
-
-
Rowan, D.D.1
-
46
-
-
62549129855
-
The Arabidopsis MYB5 transcription factor regulates mucilage synthesis, seed coat development, and trichome morphogenesis
-
Li S.F., et al. The Arabidopsis MYB5 transcription factor regulates mucilage synthesis, seed coat development, and trichome morphogenesis. Plant Cell 2009, 21:72-89.
-
(2009)
Plant Cell
, vol.21
, pp. 72-89
-
-
Li, S.F.1
-
47
-
-
58149141548
-
TTG1 complex MYBs, MYB5 and TT2, control outer seed coat differentiation
-
Gonzalez A., Mendenhall J., Huo Y., Lloyd A. TTG1 complex MYBs, MYB5 and TT2, control outer seed coat differentiation. Dev. Biol. 2009, 325:412-421.
-
(2009)
Dev. Biol.
, vol.325
, pp. 412-421
-
-
Gonzalez, A.1
Mendenhall, J.2
Huo, Y.3
Lloyd, A.4
-
48
-
-
84874199526
-
Regulation of flavonoid biosynthesis involves an unexpected complex transcriptional regulation of TT8 expression, in Arabidopsis
-
Xu W., et al. Regulation of flavonoid biosynthesis involves an unexpected complex transcriptional regulation of TT8 expression, in Arabidopsis. New Phytol. 2013, 198:59-70.
-
(2013)
New Phytol.
, vol.198
, pp. 59-70
-
-
Xu, W.1
-
49
-
-
79960921597
-
TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds
-
Appelhagen I., Lu G.H., Huep G., Schmelzer E., Weisshaar B., Sagasser M. TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds. Plant J. 2011, 67:406-419.
-
(2011)
Plant J.
, vol.67
, pp. 406-419
-
-
Appelhagen, I.1
Lu, G.H.2
Huep, G.3
Schmelzer, E.4
Weisshaar, B.5
Sagasser, M.6
-
50
-
-
14544304736
-
Characterization of three homologous basic leucine zipper transcription factors (bZIP) of the ABI5 family during Arabidopsis thaliana embryo maturation
-
Bensmihen S., Giraudat J., Parcy F. Characterization of three homologous basic leucine zipper transcription factors (bZIP) of the ABI5 family during Arabidopsis thaliana embryo maturation. J. Exp. Bot. 2005, 56:597-603.
-
(2005)
J. Exp. Bot.
, vol.56
, pp. 597-603
-
-
Bensmihen, S.1
Giraudat, J.2
Parcy, F.3
-
51
-
-
34447097920
-
Combined networks regulating seed maturation
-
Gutierrez L., Van Wuytswinkel O., Castelain M., Bellini C. Combined networks regulating seed maturation. Trends Plant Sci. 2007, 12:294-300.
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 294-300
-
-
Gutierrez, L.1
Van Wuytswinkel, O.2
Castelain, M.3
Bellini, C.4
-
52
-
-
35348877415
-
Arabidopsis TRANSPARENT TESTA GLABRA2 is directly regulated by R2R3 MYB transcription factors and is involved in regulation of GLABRA2 transcription in epidermal differentiation
-
Ishida T., et al. Arabidopsis TRANSPARENT TESTA GLABRA2 is directly regulated by R2R3 MYB transcription factors and is involved in regulation of GLABRA2 transcription in epidermal differentiation. Plant Cell 2007, 19:2531-2543.
-
(2007)
Plant Cell
, vol.19
, pp. 2531-2543
-
-
Ishida, T.1
-
53
-
-
77954242456
-
Functional characterization of a UDP-glucose:flavonoid 3-O-glucosyltransferase from the seed coat of black soybean
-
Kovinich N., Saleem A., Arnason J.T., Miki B. Functional characterization of a UDP-glucose:flavonoid 3-O-glucosyltransferase from the seed coat of black soybean. Phytochemistry 2010, 71:1253-1263.
-
(2010)
Phytochemistry
, vol.71
, pp. 1253-1263
-
-
Kovinich, N.1
Saleem, A.2
Arnason, J.T.3
Miki, B.4
-
54
-
-
72049114156
-
Endogenous tissue-specific short interfering RNAs silence the chalcone synthase gene family in Glycine max seed coats
-
Tuteja J.H., Zabala G., Varala K., Hudson M., Vodkin L.O. Endogenous tissue-specific short interfering RNAs silence the chalcone synthase gene family in Glycine max seed coats. Plant Cell 2009, 21:3063-3077.
-
(2009)
Plant Cell
, vol.21
, pp. 3063-3077
-
-
Tuteja, J.H.1
Zabala, G.2
Varala, K.3
Hudson, M.4
Vodkin, L.O.5
|