Phaeobacter aquaemixtae sp. nov., isolated from the junction between the ocean and a freshwater spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 4, 2014, Pages 1378-1383

  Park, Sooyeon ^a   Park, Doo Sang ^b   Bae, Kyung Sook ^b   Yoon, Jung Hoon ^a  

^a Sungkyunkwan University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FRESH WATER; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S; UBIQUINONE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LIPID COMPOSITION; NONHUMAN; PHAEOBACTER AQUAEMIXTAE; PHAEOBACTER CAERULEUS; PHAEOBACTER DAEPONENSIS; PHENOTYPIC VARIATION; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEA; SPRING;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FRESH WATER; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; REPUBLIC OF KOREA; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; UBIQUINONE; WATER MICROBIOLOGY;

EID: 84897941816     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.057646-0     Document Type: Article

References (24)

1. Barrow, G. I. & Feltham, R. K. A. (editors) (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
2. Baumann, P. & Baumann, L. (1981). The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes. In The Prokaryotes, pp. 1302-1331. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
3. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
4. Cohen-Bazire, G., Sistrom, W. R. & Stanier, R. Y. (1957). Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J Cell Physiol 49, 25-68.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Gaboyer, F., Tindall, B. J., Ciobanu, M.-C., Duthoit, F., Le Romancer, M. & Alain, K. (2013). Phaeobacter leonis sp. nov., an alphaproteobacterium from Mediterranean Sea sediments. Int J Syst Evol Microbiol 63, 3301-3306.
7. Komagata, K. & Suzuki, K.-I. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
8. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
9. Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B. J. & Brinkhoff, T. (2006). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol 56, 1293-1304.
10. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
11. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
12. Ruiz-Ponte, C., Cilia, V., Lambert, C. & Nicolas, J. L. (1998). Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. Int J Syst Bacteriol 48, 537-542.
13. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
14. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
15. Staley, J. T. (1968). Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. J Bacteriol 95, 1921-1942.
16. Sun, F., Wang, B., Liu, X., Lai, Q., Du, Y., Li, G., Luo, J. & Shao, Z. (2010). Leisingera nanhaiensis sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 60, 275-280.
17. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
18. Vandecandelaere, I., Segaert, E., Mollica, A., Faimali, M. & Vandamme, P. (2009). Phaeobacter caeruleus sp. nov., a blue-coloured, colonyforming bacterium isolated from a marine electroactive biofilm. Int J Syst Evol Microbiol 59, 1209-1214.
19. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
20. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
21. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter-and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
22. Yoon, J.-H., Kim, I.-G., Shin, D.-Y., Kang, K. H. & Park, Y.-H. (2003). Microbulbifer salipaludis sp. nov., a moderate halophile isolated from a Korean salt marsh. Int J Syst Evol Microbiol 53, 53-57.
23. Yoon, J.-H., Kang, S.-J., Lee, S.-Y. & Oh, T.-K. (2007). Phaeobacter daeponensis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 57, 856-861.
24. Zhang, D.-C., Li, H.-R., Xin, Y.-H., Liu, H.-C., Chi, Z.-M., Zhou, P.-J. & Yu, Y. (2008). Phaeobacter arcticus sp. nov., a psychrophilic bacterium isolated from the Arctic. Int J Syst Evol Microbiol 58, 1384-1387.