메뉴 건너뛰기




Volumn 6, Issue 9, 2011, Pages

Phylogenomic analysis of odyssella thessalonicensis fortifies the common origin of rickettsiales, pelagibacter ubique and reclimonas americana mitochondrion

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; MITOCHONDRIAL PROTEIN; BACTERIAL DNA; MITOCHONDRIAL DNA;

EID: 80053022270     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0024857     Document Type: Article
Times cited : (45)

References (36)
  • 1
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese CR, (1987) Bacterial evolution. Microbiol Rev 51: 221-271.
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 2
    • 34347390665 scopus 로고    scopus 로고
    • A robust species tree for the Alphaproteobacteria
    • Williams KP, Sobral BW, Dickerman AW, (2007) A robust species tree for the Alphaproteobacteria. J Bacteriol 189: 4578-4586.
    • (2007) J Bacteriol , vol.189 , pp. 4578-4586
    • Williams, K.P.1    Sobral, B.W.2    Dickerman, A.W.3
  • 3
    • 9444254183 scopus 로고    scopus 로고
    • The evolution of chronic infection strategies in the alpha-proteobacteria
    • Batut J, Andersson SG, O Callaghan D, (2004) The evolution of chronic infection strategies in the alpha-proteobacteria. Nat Rev Microbiol 2: 933-945.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 933-945
    • Batut, J.1    Andersson, S.G.2    O Callaghan, D.3
  • 4
    • 73049116547 scopus 로고    scopus 로고
    • Whole genome-based phylogenetic analysis of Rickettsiae
    • Merhej V, El Karkouri K, Raoult D, (2009) Whole genome-based phylogenetic analysis of Rickettsiae. Clin Microbiol Infect 15: 336-337.
    • (2009) Clin Microbiol Infect , vol.15 , pp. 336-337
    • Merhej, V.1    El Karkouri, K.2    Raoult, D.3
  • 5
    • 39049085373 scopus 로고    scopus 로고
    • Wolbachia genome integrated in an insect chromosome: evolution and fate of laterally transferred endosymbiont genes
    • Nikoh N, Tanaka K, Shibata F, Kondo N, Hizume M, et al. (2008) Wolbachia genome integrated in an insect chromosome: evolution and fate of laterally transferred endosymbiont genes. Genome Res 18: 272-280.
    • (2008) Genome Res , vol.18 , pp. 272-280
    • Nikoh, N.1    Tanaka, K.2    Shibata, F.3    Kondo, N.4    Hizume, M.5
  • 6
    • 0036208071 scopus 로고    scopus 로고
    • The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa
    • Cavalier-Smith T, (2002) The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa. Int J Syst Evol Microbiol 52: 297-354.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 297-354
    • Cavalier-Smith, T.1
  • 7
    • 0034906558 scopus 로고    scopus 로고
    • Rickettsiaceae, Rickettsia-like endosymbionts and the origin of mitochondria
    • Emelyanov VV, (2001) Rickettsiaceae, Rickettsia-like endosymbionts and the origin of mitochondria. Biosc Rep 21: 1-17.
    • (2001) Biosc Rep , vol.21 , pp. 1-17
    • Emelyanov, V.V.1
  • 8
    • 2942741365 scopus 로고    scopus 로고
    • Only six kingdoms of life
    • Cavalier-Smith T, (2004) Only six kingdoms of life. Proc Biol Sci 271: 1251-1262.
    • (2004) Proc Biol Sci , vol.271 , pp. 1251-1262
    • Cavalier-Smith, T.1
  • 9
    • 19344378727 scopus 로고    scopus 로고
    • Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements
    • Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, et al. (2004) Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. Plos Biol 2: e69.
    • (2004) Plos Biol , vol.2
    • Wu, M.1    Sun, L.V.2    Vamathevan, J.3    Riegler, M.4    Deboy, R.5
  • 10
    • 4143093598 scopus 로고    scopus 로고
    • A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes
    • Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, et al. (2004) A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol Biol Evol 21: 1643-1660.
    • (2004) Mol Biol Evol , vol.21 , pp. 1643-1660
    • Esser, C.1    Ahmadinejad, N.2    Wiegand, C.3    Rotte, C.4    Sebastiani, F.5
  • 11
    • 66749108480 scopus 로고    scopus 로고
    • A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor
    • Atteia A, Adrait A, Brugiere S, Tardif M, van Lis R, et al. (2009) A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor. Mol Biol Evol 26: 1533-1548.
    • (2009) Mol Biol Evol , vol.26 , pp. 1533-1548
    • Atteia, A.1    Adrait, A.2    Brugiere, S.3    Tardif, M.4    van Lis, R.5
  • 12
    • 35648962896 scopus 로고    scopus 로고
    • Supertrees and symbiosis in eukaryote genome evolution
    • Esser C, Martin W, (2007) Supertrees and symbiosis in eukaryote genome evolution. Trends Microbiol 15: 435-437.
    • (2007) Trends Microbiol , vol.15 , pp. 435-437
    • Esser, C.1    Martin, W.2
  • 13
    • 28944434614 scopus 로고    scopus 로고
    • Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
    • Fitzpatrick DA, Creevey CJ, McInerney JO, (2006) Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Mol Biol Evol 23: 74-85.
    • (2006) Mol Biol Evol , vol.23 , pp. 74-85
    • Fitzpatrick, D.A.1    Creevey, C.J.2    McInerney, J.O.3
  • 14
  • 15
    • 80053010700 scopus 로고    scopus 로고
    • Data from: The closest Alphaproteobacteria relative to mitochondria: insights from Candidatus Pelagibacter ubique
    • doi:10.5061/dryad.6477
    • Rodriguez Ezpeleta I, Embley TM, (2011) Data from: The closest Alphaproteobacteria relative to mitochondria: insights from Candidatus Pelagibacter ubique. Mol Biol Evol pp. doi:10.5061/dryad.6477.
    • (2011) Mol Biol Evol
    • Rodriguez Ezpeleta, I.1    Embley, T.M.2
  • 17
    • 0033967560 scopus 로고    scopus 로고
    • Candidatus Odyssella thessalonicensis' gen. nov., sp. nov., an obligate intracellular parasite of Acanthamoeba species
    • Birtles RJ, Rowbotham TJ, Michel R, Pitcher DG, La Scola B, et al. (2000) 'Candidatus Odyssella thessalonicensis' gen. nov., sp. nov., an obligate intracellular parasite of Acanthamoeba species. Int J Syst Evol Microbiol 50: 63-72.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 63-72
    • Birtles, R.J.1    Rowbotham, T.J.2    Michel, R.3    Pitcher, D.G.4    la Scola, B.5
  • 18
    • 0031007907 scopus 로고    scopus 로고
    • An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
    • Lang BF, Burger G, O Kelly CJ, Cedergren R, Golding GB, et al. (1997) An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 387: 493-497.
    • (1997) Nature , vol.387 , pp. 493-497
    • Lang, B.F.1    Burger, G.2    O Kelly, C.J.3    Cedergren, R.4    Golding, G.B.5
  • 19
    • 0026585263 scopus 로고
    • How close is close- 16S ribosomal RNA sequence identity may not be sufficient to guarantee species identity
    • Fox GE, Wisotzkey JD, Jurtshuk P, (1992) How close is close- 16S ribosomal RNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42: 166-170.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 21
    • 0347532847 scopus 로고    scopus 로고
    • Applying the bootstrap in phylogeny reconstruction
    • Soltis SP, Soltis ED, (2003) Applying the bootstrap in phylogeny reconstruction. Statist Sci 18: 256-267.
    • (2003) Statist Sci , vol.18 , pp. 256-267
    • Soltis, S.P.1    Soltis, E.D.2
  • 22
    • 66749136930 scopus 로고    scopus 로고
    • Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
    • Merhej V, Royer Carenzi M, Pontarotti P, Raoult D, (2009) Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct 4: 13.
    • (2009) Biol Direct , vol.4 , pp. 13
    • Merhej, V.1    Royer Carenzi, M.2    Pontarotti, P.3    Raoult, D.4
  • 24
    • 70049109074 scopus 로고    scopus 로고
    • Evidence that the intra-amoebal Legionella drancourtii acquired a sterol reductase gene from eukaryotes
    • Moliner C, Raoult D, Fournier PE, (2009) Evidence that the intra-amoebal Legionella drancourtii acquired a sterol reductase gene from eukaryotes. BMC Res Notes 2: 51.
    • (2009) BMC Res Notes , vol.2 , pp. 51
    • Moliner, C.1    Raoult, D.2    Fournier, P.E.3
  • 25
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: rapid annotations using subsystems technology
    • Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75-90.
    • (2008) BMC Genomics , vol.9 , pp. 75-90
    • Aziz, R.K.1    Bartels, D.2    Best, A.A.3    DeJongh, M.4    Disz, T.5
  • 28
    • 0031007907 scopus 로고    scopus 로고
    • An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
    • Lang BF, Burger G, O Kelly CJ, Cedergren R, Golding GB, et al. (1997) An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 387: 493-497.
    • (1997) Nature , vol.387 , pp. 493-497
    • Lang, B.F.1    Burger, G.2    O Kelly, C.J.3    Cedergren, R.4    Golding, G.B.5
  • 29
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar RC, (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113-132.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113-132
    • Edgar, R.C.1
  • 30
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera G, Castresana J, (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56: 564-577.
    • (2007) Syst Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 32
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 33
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 34
    • 36448956752 scopus 로고    scopus 로고
    • The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees
    • Soria Carrasco V, Talavera G, Igea J, Castresana J, (2007) The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees. Bioinformatics 23: 2954-2956.
    • (2007) Bioinformatics , vol.23 , pp. 2954-2956
    • Soria Carrasco, V.1    Talavera, G.2    Igea, J.3    Castresana, J.4
  • 35
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 36
    • 0035860458 scopus 로고    scopus 로고
    • Mechanisms of evolution in Rickettsia conorii and Rickettsia prowazekii
    • Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, et al. (2001) Mechanisms of evolution in Rickettsia conorii and Rickettsia prowazekii. Science 293: 2093-2098.
    • (2001) Science , vol.293 , pp. 2093-2098
    • Ogata, H.1    Audic, S.2    Renesto-Audiffren, P.3    Fournier, P.E.4    Barbe, V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.