-
2
-
-
0003867942
-
-
The Belknap Press of Harvard University Press Cambridge, Massachusetts
-
E. Mayr The Growth of Biological Thought 1982 The Belknap Press of Harvard University Press Cambridge, Massachusetts
-
(1982)
The Growth of Biological Thought
-
-
Mayr, E.1
-
3
-
-
0345596470
-
Biodiversity; Past, present, and future
-
J.J. Sepkoski Biodiversity; past, present, and future J. Paleontol. 71 1997 533 539
-
(1997)
J. Paleontol.
, vol.71
, pp. 533-539
-
-
Sepkoski, J.J.1
-
5
-
-
70349470948
-
Structural and functional constraints in the evolution of protein families
-
C.L. Worth, S. Gong, and T.L. Blundell Structural and functional constraints in the evolution of protein families Nat. Rev. Mol. Cell. Biol. 10 2009 709 720
-
(2009)
Nat. Rev. Mol. Cell. Biol.
, vol.10
, pp. 709-720
-
-
Worth, C.L.1
Gong, S.2
Blundell, T.L.3
-
6
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia SCOP: a structural classification of proteins database for the investigation of sequences and structures J. Mol. Biol. 247 1995 536 540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
7
-
-
0029819318
-
The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
-
S.L. Baldauf, J.D. Palmer, and W.F. Doolittle The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny Proc. Nat. Acad. Sci. U.S.A. 93 1996 7749 7754
-
(1996)
Proc. Nat. Acad. Sci. U.S.A.
, vol.93
, pp. 7749-7754
-
-
Baldauf, S.L.1
Palmer, J.D.2
Doolittle, W.F.3
-
9
-
-
0014070709
-
On the origin of mitosing cells
-
L. Sagan On the origin of mitosing cells J. Theor. Biol. 14 1967 255 274
-
(1967)
J. Theor. Biol.
, vol.14
, pp. 255-274
-
-
Sagan, L.1
-
10
-
-
2642689666
-
The hydrogen hypothesis for the first eukaryote
-
W. Martin, and M. Müller The hydrogen hypothesis for the first eukaryote Nature 392 1998 37 41
-
(1998)
Nature
, vol.392
, pp. 37-41
-
-
Martin, W.1
Müller, M.2
-
11
-
-
0033214077
-
Where is the root of the universal tree of life?
-
P. Forterre, and H. Philippe Where is the root of the universal tree of life? BioEssays 21 1999 871 879
-
(1999)
BioEssays
, vol.21
, pp. 871-879
-
-
Forterre, P.1
Philippe, H.2
-
12
-
-
0032874259
-
The rooting of the universal tree of life is not reliable
-
H. Philippe, and P. Forterre The rooting of the universal tree of life is not reliable J. Mol. Evol. 49 1999 509 523
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 509-523
-
-
Philippe, H.1
Forterre, P.2
-
13
-
-
0033210762
-
Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes
-
N.J. Tourasse, and M. Gouy Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes Mol. Phylogenet. Evol. 13 1999 159 168
-
(1999)
Mol. Phylogenet. Evol.
, vol.13
, pp. 159-168
-
-
Tourasse, N.J.1
Gouy, M.2
-
15
-
-
33751039720
-
Bushes in the tree of life
-
A. Rokas, and S.B. Carroll Bushes in the tree of life PLoS Biol. 4 2006 1899 1904
-
(2006)
PLoS Biol.
, vol.4
, pp. 1899-1904
-
-
Rokas, A.1
Carroll, S.B.2
-
16
-
-
67449131437
-
Why would phylogeneticists ignore computerized sequence alignment?
-
D.A. Morrison Why would phylogeneticists ignore computerized sequence alignment? Syst. Biol. 58 2009 150 158
-
(2009)
Syst. Biol.
, vol.58
, pp. 150-158
-
-
Morrison, D.A.1
-
17
-
-
79953716259
-
Resolving difficult phylogenetic questions: Why more sequences are not enough
-
H. Philippe, H. Brinkmann, D.V. Lavrov, D.T.J. Littlewood, M. Manuel, G. Wörheide, and D. Baurain Resolving difficult phylogenetic questions: why more sequences are not enough PLoS Biol. 9 2011
-
(2011)
PLoS Biol.
, vol.9
-
-
Philippe, H.1
Brinkmann, H.2
Lavrov, D.V.3
Littlewood, D.T.J.4
Manuel, M.5
Wörheide, G.6
Baurain, D.7
-
18
-
-
77957134043
-
The origin of eukaryotes and their relationship with the archaea: Are we at a phylogenomic impasse?
-
S. Gribaldo, A.M. Poole, V. Daubin, P. Forterre, and C. Brochier-Armanet The origin of eukaryotes and their relationship with the archaea: are we at a phylogenomic impasse? Nat. Rev. Microbiol. 8 2010 743 752
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 743-752
-
-
Gribaldo, S.1
Poole, A.M.2
Daubin, V.3
Forterre, P.4
Brochier-Armanet, C.5
-
19
-
-
33646726959
-
Genomics and the irreducible nature of eukaryote cells
-
C.G. Kurland, L.J. Collins, and D. Penny Genomics and the irreducible nature of eukaryote cells Science 312 2006 1011 1014
-
(2006)
Science
, vol.312
, pp. 1011-1014
-
-
Kurland, C.G.1
Collins, L.J.2
Penny, D.3
-
20
-
-
0021370660
-
Costs of accuracy determined by a maximal growth rate constraint
-
M. Ehrenberg, and C.G. Kurland Costs of accuracy determined by a maximal growth rate constraint Q. Rev. Biophys. 17 1984 45 82
-
(1984)
Q. Rev. Biophys.
, vol.17
, pp. 45-82
-
-
Ehrenberg, M.1
Kurland, C.G.2
-
21
-
-
0027104840
-
Translational accuracy and the fitness of bacteria
-
C.G. Kurland Translational accuracy and the fitness of bacteria Annu. Rev. Genet. 26 1992 29 50
-
(1992)
Annu. Rev. Genet.
, vol.26
, pp. 29-50
-
-
Kurland, C.G.1
-
22
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
J. Gough, K. Karplus, R. Hughey, and C. Chothia Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure J. Mol. Biol. 313 2001 903 919
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
24
-
-
70349318376
-
Structure is three to ten times more conserved than sequence - A study of structural response in protein cores
-
K. Illergård, D.H. Ardell, and A. Elofsson Structure is three to ten times more conserved than sequence - a study of structural response in protein cores Proteins 77 2009 499 508
-
(2009)
Proteins
, vol.77
, pp. 499-508
-
-
Illergård, K.1
Ardell, D.H.2
Elofsson, A.3
-
25
-
-
0000319250
-
The holy grail of the perfect character: The cladistic treatment of morphometric data
-
K. Thiele The holy grail of the perfect character: the cladistic treatment of morphometric data Cladistics 9 1993 275 304
-
(1993)
Cladistics
, vol.9
, pp. 275-304
-
-
Thiele, K.1
-
26
-
-
35948990789
-
Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
-
M. Wang, L.S. Yafremava, D. Caetano-Anollés, J.E. Mittenthal, and G. Caetano-Anollés Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world Genome Res. 17 2007 1572 1585
-
(2007)
Genome Res.
, vol.17
, pp. 1572-1585
-
-
Wang, M.1
Yafremava, L.S.2
Caetano-Anollés, D.3
Mittenthal, J.E.4
Caetano-Anollés, G.5
-
28
-
-
0034800371
-
Principal component analysis for clustering gene expression data
-
K.Y. Yeung, and W.L. Ruzzo Principal component analysis for clustering gene expression data Bioinformatics 17 2001 763 774
-
(2001)
Bioinformatics
, vol.17
, pp. 763-774
-
-
Yeung, K.Y.1
Ruzzo, W.L.2
-
29
-
-
42649088044
-
Principal component analysis of genetic data
-
D. Reich, A.L. Price, and N. Patterson Principal component analysis of genetic data Nat. Genet. 40 2008 491 492
-
(2008)
Nat. Genet.
, vol.40
, pp. 491-492
-
-
Reich, D.1
Price, A.L.2
Patterson, N.3
-
31
-
-
58149512792
-
The archaebacterial origin of eukaryotes
-
C.J. Cox, P.G. Foster, R.P. Hirt, S.R. Harris, and T.M. Embley The archaebacterial origin of eukaryotes Proc. Nat. Acad. Sci. U.S.A. 105 2008 20356 20361
-
(2008)
Proc. Nat. Acad. Sci. U.S.A.
, vol.105
, pp. 20356-20361
-
-
Cox, C.J.1
Foster, P.G.2
Hirt, R.P.3
Harris, S.R.4
Embley, T.M.5
-
33
-
-
0033231209
-
Whole genome-based phylogenetic analysis of free-living microorganisms
-
S.T. Fitz-Gibbon, and C.H. House Whole genome-based phylogenetic analysis of free-living microorganisms Nucleic Acids Res. 27 1999 4218 4222
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4218-4222
-
-
Fitz-Gibbon, S.T.1
House, C.H.2
-
34
-
-
0032900532
-
Genome phylogeny based on gene content
-
B. Snel, P. Bork, and M.A. Huynen Genome phylogeny based on gene content Nat. Genet. 21 1999 108 110
-
(1999)
Nat. Genet.
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
35
-
-
0032778047
-
The genomic tree as revealed from whole proteome comparisons
-
F. Tekaia, A. Lazcano, and B. Dujon The genomic tree as revealed from whole proteome comparisons Genome Res. 9 1999 550 557
-
(1999)
Genome Res.
, vol.9
, pp. 550-557
-
-
Tekaia, F.1
Lazcano, A.2
Dujon, B.3
-
36
-
-
20444500847
-
Evolutionary aspects of whole-genome biology
-
R.F. Doolittle Evolutionary aspects of whole-genome biology Curr. Opin. Struct. Biol. 15 2005 248 253
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 248-253
-
-
Doolittle, R.F.1
-
37
-
-
78651412161
-
Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
-
C.M. Zmasek, and A. Godzik Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires Genome Biol. 12 2011
-
(2011)
Genome Biol.
, vol.12
-
-
Zmasek, C.M.1
Godzik, A.2
-
38
-
-
17544367678
-
Convergent evolution of domain architectures (is rare)
-
J. Gough Convergent evolution of domain architectures (is rare) Bioinformatics 21 2004 1464 1471
-
(2004)
Bioinformatics
, vol.21
, pp. 1464-1471
-
-
Gough, J.1
-
40
-
-
0029006062
-
The multiplicity of domains in proteins
-
R.F. Doolittle The multiplicity of domains in proteins Annu. Rev. Biochem. 64 1995 287 314
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 287-314
-
-
Doolittle, R.F.1
-
41
-
-
84860388895
-
Planctomycetes and eukaryotes: A case of analogy not homology
-
J.O. McInerney, W.F. Martin, E.V. Koonin, J.F. Allen, M.Y. Galperin, N. Lane, J.M. Archibald, and T.M. Embley Planctomycetes and eukaryotes: a case of analogy not homology BioEssays 33 2011 810 817
-
(2011)
BioEssays
, vol.33
, pp. 810-817
-
-
McInerney, J.O.1
Martin, W.F.2
Koonin, E.V.3
Allen, J.F.4
Galperin, M.Y.5
Lane, N.6
Archibald, J.M.7
Embley, T.M.8
-
43
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eucarya
-
C.R. Woese, O. Kandler, and M.L. Wheelis Towards a natural system of organisms: proposal for the domains archaea, bacteria, and eucarya Proc. Nat. Acad. Sci. U.S.A. 87 1990 4576 4579
-
(1990)
Proc. Nat. Acad. Sci. U.S.A.
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
44
-
-
3042720475
-
Genome evolution in yeasts
-
B. Dujon, D. Sherman, G. Fischer, P. Durrens, S. Casaregela, I. Lafentaine, J. De Montigny, C. Marck, C. Neuvéglise, E. Talla, N. Goffard, L. Frangeul, M. Algie, V. Anthouard, A. Babour, V. Barbe, S. Barnay, S. Blanchin, J.M. Beckerich, E. Beyne, C. Bleykasten, A. Boisramé, J. Boyer, L. Cattolico, F. Confanioleri, A. De Daruvar, L. Despons, E. Fabre, C. Fairhead, H. Ferry-Dumazet, A. Groppi, F. Hantraye, C. Hennequin, N. Jauniaux, P. Joyot, R. Kachouri, A. Kerrest, R. Koszul, M. Lemaire, I. Lesur, L. Ma, H. Muller, J.M. Nicaud, M. Nikolski, S. Oztas, O. Ozier-Kalogeropoulos, S. Pellenz, S. Potter, G.F. Richard, M.L. Straub, A. Suleau, D. Swennen, F. Tekai, M. Wésolowski-Louvel, E. Westhof, B. Wirth, M. Zeniou-Meyer, I. Zivanovic, M. Bolotin-Fukuhara, A. Thierry, C. Bouchter, B. Caudron, C. Scarpelli, C. Gaillardin, J. Weissebach, P. Wincker, and J.L. Souciet Genome evolution in yeasts Nature 430 2004 35 44
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregela, S.5
Lafentaine, I.6
De Montigny, J.7
Marck, C.8
Neuvéglise, C.9
Talla, E.10
Goffard, N.11
Frangeul, L.12
Algie, M.13
Anthouard, V.14
Babour, A.15
Barbe, V.16
Barnay, S.17
Blanchin, S.18
Beckerich, J.M.19
Beyne, E.20
Bleykasten, C.21
Boisramé, A.22
Boyer, J.23
Cattolico, L.24
Confanioleri, F.25
De Daruvar, A.26
Despons, L.27
Fabre, E.28
Fairhead, C.29
Ferry-Dumazet, H.30
Groppi, A.31
Hantraye, F.32
Hennequin, C.33
Jauniaux, N.34
Joyot, P.35
Kachouri, R.36
Kerrest, A.37
Koszul, R.38
Lemaire, M.39
Lesur, I.40
Ma, L.41
Muller, H.42
Nicaud, J.M.43
Nikolski, M.44
Oztas, S.45
Ozier-Kalogeropoulos, O.46
Pellenz, S.47
Potter, S.48
Richard, G.F.49
Straub, M.L.50
Suleau, A.51
Swennen, D.52
Tekai, F.53
Wésolowski-Louvel, M.54
Westhof, E.55
Wirth, B.56
Zeniou-Meyer, M.57
Zivanovic, I.58
Bolotin-Fukuhara, M.59
Thierry, A.60
Bouchter, C.61
Caudron, B.62
Scarpelli, C.63
Gaillardin, C.64
Weissebach, J.65
Wincker, P.66
Souciet, J.L.67
more..
-
45
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
W.F. Doolittle Phylogenetic classification and the universal tree Science 284 1999 2124 2128
-
(1999)
Science
, vol.284
, pp. 2124-2128
-
-
Doolittle, W.F.1
-
46
-
-
33947380915
-
Adaptations to energy stress dictate the ecology and evolution of the archaea
-
D.L. Valentine Adaptations to energy stress dictate the ecology and evolution of the archaea Nat. Rev. Microbiol. 5 2007 316 323
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 316-323
-
-
Valentine, D.L.1
-
47
-
-
0036182064
-
Evolved RNA secondary structure and the rooting of the universal tree of life
-
G. Caetano-Anollés Evolved RNA secondary structure and the rooting of the universal tree of life J. Mol. Evol. 54 2002 333 345
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 333-345
-
-
Caetano-Anollés, G.1
-
48
-
-
0030023247
-
Determining divergence times of the major kingdoms of living organisms with a protein clock
-
R.F. Doolittle, D.F. Feng, S. Tsang, G. Cho, and E. Little Determining divergence times of the major kingdoms of living organisms with a protein clock Science 271 1996 470 477
-
(1996)
Science
, vol.271
, pp. 470-477
-
-
Doolittle, R.F.1
Feng, D.F.2
Tsang, S.3
Cho, G.4
Little, E.5
-
49
-
-
0030696044
-
Determining divergence times with a protein clock: Update and reevaluation
-
D.-F. Feng, G. Cho, and R.F. Doolittle Determining divergence times with a protein clock: update and reevaluation Proc. Nat. Acad. Sci. U.S.A. 94 1997 13028 13033
-
(1997)
Proc. Nat. Acad. Sci. U.S.A.
, vol.94
, pp. 13028-13033
-
-
Feng, D.-F.1
Cho, G.2
Doolittle, R.F.3
-
50
-
-
0000298267
-
Lateral gene transfer, genome surveys, and the phylogeny of prokaryotes
-
in response to, M. Huynen, B. Snel, and P. Bork
-
W.F. Doolittle in response to, M. Huynen, B. Snel, and P. Bork Lateral gene transfer, genome surveys, and the phylogeny of prokaryotes Science 286 1999 1443
-
(1999)
Science
, vol.286
, pp. 1443
-
-
Doolittle1
-
51
-
-
0014421064
-
Evolutionary rate at the molecular level
-
M. Kimura Evolutionary rate at the molecular level Nature 217 1968 624 626
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
53
-
-
32044440746
-
A minimal estimate for the gene content of the last universal common ancestor - Exobiology from a terrestrial perspective
-
C.A. Ouzounis, V. Kunin, N. Darzentas, and L. Goldovsky A minimal estimate for the gene content of the last universal common ancestor - exobiology from a terrestrial perspective Res. Microbiol. 157 2006 57 68
-
(2006)
Res. Microbiol.
, vol.157
, pp. 57-68
-
-
Ouzounis, C.A.1
Kunin, V.2
Darzentas, N.3
Goldovsky, L.4
-
55
-
-
77749292050
-
Calibrating the cryogenian
-
F.A. Macdonald, M.D. Schmitz, J.L. Crowley, C.F. Roots, D.S. Jones, A.C. Maloof, J.V. Strauss, P.A. Cohen, D.T. Johnston, and D.P. Schrag Calibrating the cryogenian Science 327 2010 1241 1243
-
(2010)
Science
, vol.327
, pp. 1241-1243
-
-
Macdonald, F.A.1
Schmitz, M.D.2
Crowley, J.L.3
Roots, C.F.4
Jones, D.S.5
Maloof, A.C.6
Strauss, J.V.7
Cohen, P.A.8
Johnston, D.T.9
Schrag, D.P.10
-
56
-
-
22544455292
-
TEM evidence for eukaryotic diversity in mid-Proterozoic oceans
-
E.J. Javaux, A.H. Knoll, and M.R. Walter TEM evidence for eukaryotic diversity in mid-Proterozoic oceans Geobiology 2 2004 121 132
-
(2004)
Geobiology
, vol.2
, pp. 121-132
-
-
Javaux, E.J.1
Knoll, A.H.2
Walter, M.R.3
-
57
-
-
77249101984
-
Organic-walled microfossils in 3.2-billion-year-old shallow-marine siliciclastic deposits
-
E.J. Javaux, C.P. Marshall, and A. Bekker Organic-walled microfossils in 3.2-billion-year-old shallow-marine siliciclastic deposits Nature 463 2010 934 938
-
(2010)
Nature
, vol.463
, pp. 934-938
-
-
Javaux, E.J.1
Marshall, C.P.2
Bekker, A.3
|