White-light diffraction tomography of unlabelled live cells

Nature Photonics

Volumn 8, Issue 3, 2014, Pages 256-263

  Kim, Taewoo ^a   Zhou, Renjie ^a   Mir, Mustafa ^a   Babacan, S Derin ^b   Carney, P Scott ^a   Goddard, Lynford L ^a   Popescu, Gabriel ^a  

^a University of Illinois at Urbana Champaign   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIFFRACTION TOMOGRAPHY; ESCHERICHIA COLI CELLS; PHASE CONTRAST MICROSCOPES; SCANNING ELECTRON MICROSCOPY IMAGE; SUBCELLULAR STRUCTURE; THREE-DIMENSIONAL STRUCTURE; TRANSPARENT OBJECTS; WHITE-LIGHT ILLUMINATION;

DIFFRACTION; ESCHERICHIA COLI; SCANNING ELECTRON MICROSCOPY; THREE DIMENSIONAL; TOMOGRAPHY;

IMAGE RECONSTRUCTION;

EID: 84897584855     PISSN: 17494885     EISSN: 17494893     Source Type: Journal    
DOI: 10.1038/nphoton.2013.350     Document Type: Article

References (50)

1. Als-Nielsen, J & McMorrow, D. Elements of Modern X-ray Physics (Wiley, 2001
2. Jiang, H. et al. Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy. Proc. Natl Acad. Sci. USA 107, 11234-11239 (2010
3. Raines, K. S. et al. Three-dimensional structure determination from a single view. Nature 463, 214-217 (2010
4. Born, M. & Wolf, E. Principles of Optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light 7th expanded edn (Cambridge Univ. Press, 1999
5. Devaney, A. J. Inverse-scattering theory within the Rytov approximation. Opt. Lett. 6, 374-376 (1981
6. Wolf, E. in Advances in Imaging and Electron Physics Vol. 165 (ed. Hawkes, P. W.) Ch. 7 (Academic, 2011
7. Wolf, E. Three-dimensional structure determination of semi-Transparent objects from holographic data. Opt. Commun. 1, 153-156 (1969
8. Gabor, D. A new microscopic principle. Nature 161, 777-778 (1948
9. Popescu, G Quantitative Phase Imaging of Cells and Tissues (McGraw-Hill, 2011
10. Paganin, D. & Nugent, K. A. Noninterferometric phase imaging with partially coherent light. Phys. Rev. Lett. 80, 2586-2589 (1998
11. Marquet, P. et al. Digital holographic microscopy: A noninvasive contrast imaging technique allowing quantitative visualization of living cells with subwavelength axial accuracy. Opt. Lett. 30, 468-470 (2005
12. Chalut, K. J., Brown, W. J. & Wax, A. Quantitative phase microscopy with asynchronous digital holography. Opt. Express 15, 3047-3052 (2007
13. Popescu, G. et al. Fourier phase microscopy for investigation of biological structures and dynamics. Opt. Lett. 29, 2503-2505 (2004
14. Ikeda, T., Popescu, G., Dasari, R. R. & Feld, M. S. Hilbert phase microscopy for investigating fast dynamics in transparent systems. Opt. Lett. 30, 1165-1168 (2005
15. Popescu, G., Ikeda, T., Dasari, R. R. & Feld, M. S. Diffraction phase microscopy for quantifying cell structure and dynamics. Opt. Lett. 31, 775-777 (2006
16. Wang, Z. et al. Spatial light interference microscopy (SLIM). Opt. Express 19, 1016-1026 (2011
17. Rappaz, B. et al. Comparative study of human erythrocytes by digital holographic microscopy, confocal microscopy, and impedance volume analyzer. Cytometry A 73A, 895-903 (2008
18. Khmaladze, A., Kim, M. & Lo, C. M. Phase imaging of cells by simultaneous dual-wavelength reflection digital holography. Opt. Express 16, 10900-10911 (2008
19. Shaked, N. T., Rinehart, M. T. & Wax, A. Dual-interference-channel quantitative-phase microscopy of live cell dynamics. Opt. Lett. 34, 767-769 (2009
20. Park, Y. K. et al. Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum. Proc. Natl Acad. Sci. USA 105, 13730-13735 (2008
21. Park, Y. K. et al. Measurement of red blood cell mechanics during morphological changes. Proc. Natl Acad. Sci. USA 107, 6731-6736 (2010
22. Mir, M. et al. Optical measurement of cycle-dependent cell growth. Proc. Natl Acad. Sci. USA 108, 13124-13129 (2011
23. Pavillon, N. et al. Early cell death detection with digital holographic microscopy. PLoS ONE 7, e30912 (2012
24. Chen, B. Q. & Stamnes, J. J. Validity of diffraction tomography based on the first Born and the first Rytov approximations. Appl. Opt. 37, 2996-3006 (1998
25. Carney, P. S., Wolf, E. & Agarwal, G. S. Diffraction tomography using power extinction measurements. J. Opt. Soc. Am. A 16, 2643-2648 (1999
26. Lauer, V. New approach to optical diffraction tomography yielding a vector equation of diffraction tomography and a novel tomographic microscope. J. Microsc. 205, 165-176 (2002
27. Charriere, F. et al. Living specimen tomography by digital holographic microscopy: Morphometry of testate amoeba. Opt. Express 14, 7005-7013 (2006
28. Charriere, F. et al. Cell refractive index tomography by digital holographic microscopy. Opt. Lett. 31, 178-180 (2006
29. Choi, W. et al. Tomographic phase microscopy. Nature Methods 4, 717-719 (2007
30. Cotte, Y. et al. Marker-free phase nanoscopy. Nature Photon. 7, 113-117 (2013
31. Choi,W. S., Fang-Yen, C., Badizadegan, K., Dasari, R. R. & Feld, M. S. Extended depth of focus in tomographic phase microscopy using a propagation algorithm. Opt. Lett. 33, 171-173 (2008
32. Zhou, R., Edwards, C., Arbabi, A., Popescu, G & Goddard, L. L. Detecting 20 nm wide defects in large area nanopatterns using optical interferometric microscopy. Nano Lett. 13, 3716-3721 (2013
33. Goodman, J.W. Speckle Phenomena in Optics: Theory and Applications (Roberts & Co., 2007
34. Mir, M. et al. Visualizing Escherichia coli sub-cellular structure using sparse deconvolution spatial light interference tomography. PLoS ONE 7, e39816 (2012
35. Wang, Z. et al. Spatial light interference tomography (SLIT). Opt. Express 19, 19907-19918 (2011
36. Bon, P., Aknoun, S., Savatier, J., Wattellier, B. & Monneret, S. in Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XX (eds Cogswell, C. J., Brown, T. G., Conchello, J-A. & Wilson, T.) 858-918 SPIE (2013
37. Pawley, JB. Handbook of Biological Confocal Microscopy 3rd edn (Springer, 2006
38. Ding, H. F., Wang, Z., Nguyen, F., Boppart, S. A. & Popescu, G. Fourier transform light scattering of inhomogeneous and dynamic structures. Phys. Rev. Lett. 101, 238102 (2008
39. Chew, W. C. Waves and Fields in Inhomogeneous Media (IEEE Press, 1995
40. Kim, T., Sridharan, S. & Popescu, G. in Handbook of Coherent-Domain Optical Methods Vol. 1 (ed. Tuchin, V. V.) Ch. 7, 259-290 (Springer, 2013
41. Huang, D. et al. Optical coherence tomography. Science 254, 1178-1181 (1991
42. Ralston, T. S., Marks, D. L., Carney, P. S. & Boppart, S. A. Interferometric synthetic aperture microscopy. Nature Phys. 3, 129-134 (2007
43. Bain, B J. A Beginner's Guide to Blood Cells 2nd edn (Blackwell, 2004
44. Khairy, K., Foo, J. & Howard, J. Shapes of red blood cells: Comparison of 3D confocal images with the bilayer-couple model. Cell. Mol. Bioeng. 1, 173-181 (2008
45. Babacan, S. D., Wang, Z., Do, M. & Popescu, G. Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy. Biomed. Opt. Exp. 2, 1815-1827 (2011
46. Donachie, W. D. Co-ordinate regulation of the Escherichia coli cell cycle or the cloud of unknowing. Mol. Microbiol. 40, 779-785 (2001
47. Raskin, D. M. & De Boer, P. A. J. Rapid pole-To-pole oscillation of a protein required for directing division to the middle of Escherichia coli. Proc. Natl Acad. Sci. USA 96, 4971-4976 (1999
48. Ghosh, A. S. & Young, K. D. Helical disposition of proteins and lipopolysaccharide in the outer membrane of Escherichia coli. J. Bacteriol. 187, 1913-1922 (2005
49. Wiener, N. Generalized harmonic analysis. Acta Mathematica 55, 117-258 (1930
50. Khintchine, A. Eine verschärfung des poincaréschen 'wiederkehrsatzes'. Comp. Math 1, 177-179 (1935