Mitochondrial proteome remodeling in ischemic heart failure

Life Sciences

Volumn 101, Issue 1-2, 2014, Pages 27-36

  Liu, Tingting ^a   Chen, Le ^a   Kim, Eunjung ^c   Tran, Diana ^a   Phinney, Brett S ^a   Knowlton, Anne A ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b VETERANS AFFAIRS MEDICAL CENTER   (United States)

^c Daejeon Catholic University Hospital   (South Korea)

Author keywords

Complex I; Complex II; Complex IV; Heart; Heart failure; Ischemic heart failure; Mitochondria; NADH dehydrogenase; NDUFA5; NDUFV1; Proteome remodeling

Indexed keywords

ADENOSINE TRIPHOSPHATE; MITOCHONDRIAL PROTEIN; PROTEOME; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE);

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTERY LIGATION; ARTICLE; CELL FUNCTION; CONTROLLED STUDY; DISORDERS OF MITOCHONDRIAL FUNCTIONS; DOWN REGULATION; ELECTRON MICROSCOPY; HEART FAILURE; HEART LEFT VENTRICLE; HEART MITOCHONDRION; HEART MUSCLE ISCHEMIA; MALE; MASS SPECTROMETRY; MITOCHONDRIAL RESPIRATION; NONHUMAN; PROTEIN ANALYSIS; PROTEIN EXPRESSION; RAT; TISSUE REGENERATION; UPREGULATION;

RATTUS;

COMPLEX I; COMPLEX II; COMPLEX IV; HEART; HEART FAILURE; ISCHEMIC HEART FAILURE; MITOCHONDRIA; NADH DEHYDROGENASE; NDUFA5; NDUFV1; PROTEOME REMODELING;

ADENOSINE TRIPHOSPHATE; ANIMALS; DOWN-REGULATION; ELECTRON TRANSPORT COMPLEX I; ELECTRON TRANSPORT COMPLEX II; ELECTRON TRANSPORT COMPLEX IV; HEART FAILURE; MALE; MITOCHONDRIA, HEART; MITOCHONDRIAL PROTEINS; MYOCARDIAL ISCHEMIA; OXYGEN CONSUMPTION; PROTEOME; RATS; SIGNAL TRANSDUCTION; UP-REGULATION;

EID: 84897579305     PISSN: 00243205     EISSN: 18790631     Source Type: Journal    
DOI: 10.1016/j.lfs.2014.02.004     Document Type: Article

References (46)

1. G. Agnetti, N. Kaludercic, L.A. Kane, S.T. Elliott, Y. Guo, and K. Chakir et al. Modulation of mitochondrial proteome and improved mitochondrial function by biventricular pacing of dyssynchronous failing hearts Circ Cardiovasc Genet 3 2010 78 87
2. A. Anitha, K. Nakamura, I. Thanseem, H. Matsuzaki, T. Miyachi, and M. Tsujii et al. Downregulation of the expression of mitochondrial electron transport complex genes in autism brains Brain Pathol 23 2013 294 302
3. M. Bayeva, M. Gheorghiade, and H. Ardehali Mitochondria as a therapeutic target in heart failure J Am Coll Cardiol 61 2013 599 610
4. J.J. Belch, A.B. Bridges, N. Scott, and M. Chopra Oxygen free radicals and congestive heart failure Br Heart J 65 1991 245 248
5. C. Birner, A. Dietl, R. Deutzmann, J. Schroder, P. Schmid, and C. Jungbauer et al. Proteomic profiling implies mitochondrial dysfunction in tachycardia-induced heart failure J Card Fail 18 2012 660 673
6. G.C. Brown, and V. Borutaite There is no evidence that mitochondria are the main source of reactive oxygen species in mammalian cells Mitochondrion 12 2012 1 4
7. H. Bugger, M. Schwarzer, D. Chen, A. Schrepper, P.A. Amorim, and M. Schoepe et al. Proteomic remodelling of mitochondrial oxidative pathways in pressure overload-induced heart failure Cardiovasc Res 85 2010 376 384
8. L.S. Burwell, and P.S. Brookes Mitochondria as a target for the cardioprotective effects of nitric oxide in ischemia-reperfusion injury Antioxid Redox Signal 10 2008 579 599
9. L. Chen, and A.A. Knowlton Mitochondrial dynamics in heart failure Congest Heart Fail 17 2011 257 261
10. L. Chen, Q. Gong, J.P. Stice, and A.A. Knowlton Mitochondrial OPA1, apoptosis, and heart failure Cardiovasc Res 84 2009 91 99
11. L. Chen, T. Liu, A. Tran, X. Lu, A.A. Tomilov, and V. Davies et al. OPA1 mutation and late-onset cardiomyopathy: mitochondrial dysfunction and mtDNA instability J Am Heart Assoc 1 2012 e003012
12. D.F. Dai, E.J. Hsieh, Y. Liu, T. Chen, R.P. Beyer, and M.T. Chin et al. Mitochondrial proteome remodelling in pressure overload-induced heart failure: the role of mitochondrial oxidative stress Cardiovasc Res 93 2012 79 88
13. C. Frezza, S. Cipolat, and L. Scorrano Organelle isolation: functional mitochondria from mouse liver, muscle and cultured fibroblasts Nat Protoc 2 2007 287 295
14. J.E. Grant, A.D. Bradshaw, J.H. Schwacke, C.F. Baicu, M.R. Zile, and K.L. Schey Quantification of protein expression changes in the aging left ventricle of Rattus norvegicus J Proteome Res 8 2009 4252 4263
15. S.J. Hoefs, F.J. van Spronsen, E.W. Lenssen, L.G. Nijtmans, R.J. Rodenburg, and J.A. Smeitink et al. Ndufa10 mutations cause complex I deficiency in a patient with Leigh disease Eur J Hum Genet 19 2011 270 274
16. J.M. Hollander, W.A. Baseler, and E.R. Dabkowski Proteomic remodeling of mitochondria in heart failure Congest Heart Fail 17 2011 262 268
17. T. Ide, H. Tsutsui, S. Kinugawa, H. Utsumi, and A. Takeshita Amiodarone protects cardiac myocytes against oxidative injury by its free radical scavenging action Circulation 100 1999 690 692
18. T. Ide, H. Tsutsui, S. Kinugawa, N. Suematsu, S. Hayashidani, and K. Ichikawa et al. Direct evidence for increased hydroxyl radicals originating from superoxide in the failing myocardium Circ Res 86 2000 152 157
19. T. Ide, H. Tsutsui, S. Hayashidani, D. Kang, N. Suematsu, and K. Nakamura et al. Mitochondrial DNA damage and dysfunction associated with oxidative stress in failing hearts after myocardial infarction Circ Res 88 2001 529 535
20. J. Jeon, J.H. Jeong, J.H. Baek, H.J. Koo, W.H. Park, and J.S. Yang et al. Network clustering revealed the systemic alterations of mitochondrial protein expression PLoS Comput Biol 7 2011 e1002093
21. Y. Jiang, and X. Wang Comparative mitochondrial proteomics: perspective in human diseases J Hematol Oncol 5 2012 11
22. A. Keller, A.I. Nesvizhskii, E. Kolker, and R. Aebersold Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal Chem 74 2002 5383 5392
23. Y. Kimura, and K. Tanaka Regulatory mechanisms involved in the control of ubiquitin homeostasis J Biochem 147 2010 793 798
24. F. Kosar, N. Ermis, N. Erdil, and B. Battaloglu Anomalous LAD and CX artery arising separately from the proximal right coronary artery - a case report of single coronary artery with coronary artery disease J Card Surg 21 2006 309 312
25. J. Kuroda, T. Ago, S. Matsushima, P. Zhai, M.D. Schneider, and J. Sadoshima NADPH oxidase 4 (Nox4) is a major source of oxidative stress in the failing heart Proc Natl Acad Sci U S A 107 2010 15565 15570
26. L. Lin, S.C. Kim, Y. Wang, S. Gupta, B. Davis, and S.I. Simon et al. HSP60 in heart failure: abnormal distribution and role in cardiac myocyte apoptosis Am J Physiol Heart Circ Physiol 293 2007 H2238 H2247
27. A.I. Nesvizhskii, A. Keller, E. Kolker, and R. Aebersold A statistical model for identifying proteins by tandem mass spectrometry Anal Chem 75 2003 4646 4658
28. H. Ono, H. Nakamura, and M. Matsuzaki A NADH dehydrogenase ubiquinone flavoprotein is decreased in patients with dilated cardiomyopathy Intern Med 49 2010 2039 2042
29. O. Ortega-Recalde, D.J. Fonseca, L.C. Patino, J.J. Atuesta, C. Rivera-Nieto, and C.M. Restrepo et al. A novel familial case of diffuse leukodystrophy related to NDUFV1 compound heterozygous mutations Mitochondrion 13 2013 749 754
30. G. Paradies, G. Petrosillo, M. Pistolese, and F.M. Ruggiero Reactive oxygen species affect mitochondrial electron transport complex I activity through oxidative cardiolipin damage Gene 286 2002 135 141
31. M.G. Rosca, and C.L. Hoppel Mitochondrial dysfunction in heart failure Heart Fail Rev 18 2013 607 622
32. N.J. Severs, A.F. Bruce, E. Dupont, and S. Rothery Remodelling of gap junctions and connexin expression in diseased myocardium Cardiovasc Res 80 2008 9 19
33. F.L. Sheeran, J. Rydstrom, M.I. Shakhparonov, N.B. Pestov, and S. Pepe Diminished NADPH transhydrogenase activity and mitochondrial redox regulation in human failing myocardium Biochim Biophys Acta 1797 2010 1138 1148
34. A. Shevchenko, I. Chernushevic, M. Wilm, and M. Mann "De novo" sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry Mol Biotechnol 20 2002 107 118
35. M. Sterba, O. Popelova, J. Lenco, A. Fucikova, E. Brcakova, and Y. Mazurova et al. Proteomic insights into chronic anthracycline cardiotoxicity J Mol Cell Cardiol 50 2011 849 862
36. J.P. Stice, L. Chen, S.C. Kim, J.S. Jung, A.L. Tran, and T.T. Liu et al. 17beta-estradiol, aging, inflammation, and the stress response in the female heart Endocrinology 152 2011 1589 1598
37. D.L. Tabb What's driving false discovery rates? J Proteome Res 7 2008 45 46
38. H. Tsutsui, T. Ide, S. Hayashidani, N. Suematsu, T. Shiomi, and J. Wen et al. Enhanced generation of reactive oxygen species in the limb skeletal muscles from a murine infarct model of heart failure Circulation 104 2001 134 136
39. H. Tsutsui, T. Ide, and S. Kinugawa Mitochondrial oxidative stress, DNA damage, and heart failure Antioxid Redox Signal 8 2006 1737 1744
40. G.J. van Ekeren, R.C. Sengers, and A.M. Stadhouders Changes in volume densities and distribution of mitochondria in rat skeletal muscle after chronic hypoxia Int J Exp Pathol 73 1992 51 60
41. M.R. Voss, J.N. Stallone, M. Li, R.N. Cornelussen, P. Knuefermann, and A.A. Knowlton Gender differences in the expression of heat shock proteins: the effect of estrogen Am J Physiol Heart Circ Physiol 285 2003 H687 H692
42. R. Wong, A.M. Aponte, C. Steenbergen, and E. Murphy Cardioprotection leads to novel changes in the mitochondrial proteome Am J Physiol Heart Circ Physiol 298 2010 H75 H91
43. B. Zhang, N.C. VerBerkmoes, M.A. Langston, E. Uberbacher, R.L. Hettich, and N.F. Samatova Detecting differential and correlated protein expression in label-free shotgun proteomics J Proteome Res 5 2006 2909 2918
44. Y. Zhang, Z. Wen, M.P. Washburn, and L. Florens Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins Anal Chem 82 2010 2272 2281
45. J. Zhang, A. Lin, J. Powers, M.P. Lam, C. Lotz, and D. Liem et al. Perspectives on: SGP symposium on mitochondrial physiology and medicine: mitochondrial proteome design: from molecular identity to pathophysiological regulation J Gen Physiol 139 2012 395 406
46. J. Zlatkovic, D.K. Arrell, G.C. Kane, T. Miki, S. Seino, and A. Terzic Proteomic profiling of KATP channel-deficient hypertensive heart maps risk for maladaptive cardiomyopathic outcome Proteomics 9 2009 1314 1325