Comprehensive characterization of serum microRNA profile in response to the emerging avian influenza A (H7N9) virus infection in humans

Viruses

Volumn 6, Issue 4, 2014, Pages 1525-1539

  Zhu, Zheng ^a   Qi, Yuhua ^a   Ge, Aihua ^b   Zhu, Yefei ^b   Xu, Ke ^b   Ji, Hong ^b   Shi, Zhiyang ^a   Cui, Lunbiao ^a   Zhou, Minghao ^a  

^a BEIJING HOSPITAL   (China)

^b JIANGSU PROVINCIAL CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

Author keywords

Avian influenza; Expression profile; H7n9 virus; Serum microRNA

Indexed keywords

MICRORNA; MICRORNA 106A; MICRORNA 17; MICRORNA 20A; MICRORNA 376C; UNCLASSIFIED DRUG; BIOLOGICAL MARKER;

ADULT; AREA UNDER THE CURVE; ARTICLE; AVIAN INFLUENZA VIRUS; CLINICAL ARTICLE; CONTROLLED STUDY; DOWN REGULATION; FEMALE; GENE EXPRESSION; HUMAN; INFLUENZA A; INFLUENZA VIRUS A H7N9; MALE; MIDDLE AGED; REAL TIME POLYMERASE CHAIN REACTION; RECEIVER OPERATING CHARACTERISTIC; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; UPREGULATION; AGED; ANIMAL; BLOOD; CHEMISTRY; CHINA; COMMUNICABLE DISEASES, EMERGING; INFLUENZA, HUMAN; ISOLATION AND PURIFICATION; MICROARRAY ANALYSIS; PATHOLOGY; SERUM; VIROLOGY;

ADULT; AGED; ANIMALS; BIOLOGICAL MARKERS; CHINA; COMMUNICABLE DISEASES, EMERGING; FEMALE; HUMANS; INFLUENZA A VIRUS, H7N9 SUBTYPE; INFLUENZA, HUMAN; MALE; MICROARRAY ANALYSIS; MICRORNAS; MIDDLE AGED; REAL-TIME POLYMERASE CHAIN REACTION; ROC CURVE; SERUM;

EID: 84897541185     PISSN: 19994915     EISSN: None     Source Type: Journal    
DOI: 10.3390/v6041525     Document Type: Article

References (43)

1. Gao, R.; Cao, B.; Hu, Y.; Feng, Z.; Wang, D.; Hu, W.; Chen, J.; Jie, Z.; Qiu, H.; Xu, K. et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N. Engl. J. Med. 2013, 368, 1888-1897.
2. Chen, Y.; Liang, W.; Yang, S.; Wu, N.; Gao, H.; Sheng, J.; Yao, H.; Wo, J.; Fang, Q.; Cui, D. et al. Human infections with the emerging avian influenza A H7N9 virus from wet market poultry: Clinical analysis and characterisation of viral genome. Lancet 2013, 381, 1916-1925.
3. Li, Q.; Zhou, L.; Zhou, M.; Chen, Z.; Li, F.; Wu, H.; Xiang, N.; Chen, E.; Tang, F.; Wang, D. et al. Preliminary report: Epidemiology of the avian influenza A (H7N9) outbreak in China. N. Engl. J. Med. 2013, 370, 520-532.
4. World Health Organization. Number of confirmed human cases of avian influenza A (H7N9) reported to WHO, as of 25 October 2013. Available online: http://www.who.int/influenza/human_ animal_interface/influenza_h7n9/10u_ReportWebH7N9Number.pdf (accessed on 25 October 2013).
5. Bartel, D.P. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 2004, 116, 281-297.
6. Lewis, B.P.; Burge, C.B.; Bartel, D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120, 15-20.
7. Bushati, N.; Cohen, S.M. Microrna functions. Annu. Rev. Cell Dev. Biol. 2007, 23, 175-205.
8. Esquela-Kerscher, A.; Slack, F.J. Oncomirs-microRNAs with a role in cancer. Nat. Rev. Cancer 2006, 6, 259-269.
9. Chen, X.; Ba, Y.; Ma, L.; Cai, X.; Yin, Y.; Wang, K.; Guo, J.; Zhang, Y.; Chen, J.; Guo, X. et al. Characterization of microRNAs in serum: A novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 2008, 18, 997-1006.
10. Lawrie, C.H.; Gal, S.; Dunlop, H.M.; Pushkaran, B.; Liggins, A.P.; Pulford, K.; Banham, A.H.; Pezzella, F.; Boultwood, J.; Wainscoat, J.S. et al. Detection of elevated levels of tumour-associated microRNAs in serum of patients with diffuse large B-cell lymphoma. Br. J. Haematol. 2008, 141, 672-675.
11. Wu, Q.; Wang, C.; Lu, Z.; Guo, L.; Ge, Q. Analysis of serum genome-wide microRNAs for breast cancer detection. Clin. Chim. Acta 2012, 413, 1058-1065.
12. Hofsli, E.; Sjursen, W.; Prestvik, W.S.; Johansen, J.; Rye, M.; Trano, G.; Wasmuth, H.H.; Hatlevoll, I.; Thommesen, L. Identification of serum microRNA profiles in colon cancer. Br. J. Cancer 2013, 108, 1712-1719.
13. Fleischhacker, S.N.; Bauersachs, S.; Wehner, A.; Hartmann, K.; Weber, K. Differential expression of circulating microRNAs in diabetic and healthy lean cats. Vet. J. 2013, 197, 688-693.
14. Iborra, M.; Bernuzzi, F.; Correale, C.; Vetrano, S.; Fiorino, G.; Beltran, B.; Marabita, F.; Locati, M.; Spinelli, A.; Nos, P. et al. Identification of serum and tissue micro-RNA expression profiles in different stages of inflammatory bowel disease. Clin. Exp. Immunol. 2013, 173, 250-258.
15. Hu, G.; Drescher, K.M.; Chen, X.M. Exosomal miRNAs: Biological properties and therapeutic potential. Front. Genet. 2012, 3, doi:10.3389/fgene.2012.00056.
16. Dorval, V.; Nelson, P.T.; Hebert, S.S. Circulating microRNAs in Alzheimer's disease: The search for novel biomarkers. Front. Mol. Neurosci. 2013, 6, doi:10.3389/fnmol.2013.00024.
17. Pescador, N.; Perez-Barba, M.; Ibarra, J.M.; Corbaton, A.; Martinez-Larrad, M.T.; Serrano-Rios, M. Serum circulating microRNA profiling for identification of potential type 2 diabetes and obesity biomarkers. PLoS One 2013, 8, e77251.
18. Sayed, A.S.; Xia, K.; Yang, T.L.; Peng, J. Circulating microRNAs: A potential role in diagnosis and prognosis of acute myocardial infarction. Dis. Markers 2013, 35, 561-566.
19. Roth, C.; Kasimir-Bauer, S.; Pantel, K.; Schwarzenbach, H. Screening for circulating nucleic acids and caspase activity in the peripheral blood as potential diagnostic tools in lung cancer. Mol. Oncol. 2011, 5, 281-291.
20. Cuk, K.; Zucknick, M.; Heil, J.; Madhavan, D.; Schott, S.; Turchinovich, A.; Arlt, D.; Rath, M.; Sohn, C.; Benner, A. et al. Circulating microRNAs in plasma as early detection markers for breast cancer. Int. J. Cancer 2012, 132, 1602-1612.
21. Chan, M.; Liaw, C.S.; Ji, S.M.; Tan, H.H.; Wong, C.Y.; Thike, A.A.; Tan, P.H.; Ho, G.H.; Lee, A.S. Identification of circulating microRNA signatures for breast cancer detection. Clin. Cancer Res. 2013, 19, 4477-4487.
22. Cui, L.; Qi, Y.; Li, H.; Ge, Y.; Zhao, K.; Qi, X.; Guo, X.; Shi, Z.; Zhou, M.; Zhu, B. et al. Serum microRNA expression profile distinguishes enterovirus 71 and coxsackievirus 16 infections in patients with hand-foot-and-mouth disease. PLoS One 2011, 6, e27071.
23. Shrivastava, S.; Petrone, J.; Steele, R.; Lauer, G.M.; di Bisceglie, A.M.; Ray, R.B. Up-regulation of circulating miR-20a is correlated with hepatitis C virus-mediated liver disease progression. Hepatology 2013, 58, 863-871.
24. Chanteux, H.; Guisset, A.C.; Pilette, C.; Sibille, Y. LPS induces IL-10 production by human alveolar macrophages via MAPKinases- and Sp1-dependent mechanisms. Respir. Res. 2007, 8, doi:10.1186/1465-9921-8-71.
25. World Health Organization. Real-time RT-PCR protocol for the detection of Avian Influenza A(H7N9) virus. Available online: http://www.who.int/influenza/gisrs_laboratory/cnic_realtime_rt _pcr_protocol_a_h7n9.pdf (accessed on 1 December 2013).
26. Qi, Y.; Cui, L.; Ge, Y.; Shi, Z.; Zhao, K.; Guo, X.; Yang, D.; Yu, H.; Shan, Y.; Zhou, M. et al. Altered serum microRNAs as biomarkers for the early diagnosis of pulmonary tuberculosis infection. BMC Infect. Dis. 2012, 12, doi:10.1186/1471-2334-12-384.
27. SDS Relative Quantification Software, version 2.3. Applied Biosystems: Foster City, CA, USA, 2008.
28. SPSS software, version 19.0. SPSS Inc: Chicago, IL, USA, 2010.
29. Redell, J.B.; Moore, A.N.; Ward, N.H., 3rd; Hergenroeder, G.W.; Dash, P.K. Human traumatic brain injury alters plasma microRNA levels. J. Neurotrauma 2010, 27, 2147-2156.
30. Bakre, A.; Mitchell, P.; Coleman, J.K.; Jones, L.P.; Saavedra, G.; Teng, M.; Tompkins, S.M.; Tripp, R.A. Respiratory syncytial virus modifies microRNAs regulating host genes that affect virus replication. J. Gen. Virol. 2012, 93, 2346-2356.
31. Ma, Y.J.; Yang, J.; Fan, X.L.; Zhao, H.B.; Hu, W.; Li, Z.P.; Yu, G.C.; Ding, X.R.; Wang, J.Z.; Bo, X.C. et al. Cellular microRNA let-7c inhibits M1 protein expression of the H1N1 influenza A virus in infected human lung epithelial cells. J. Cell Mol. Med. 2012, 16, 2539-2546.
32. Onnis, A.; Navari, M.; Antonicelli, G.; Morettini, F.; Mannucci, S.; de Falco, G.; Vigorito, E.; Leoncini, L. Epstein-Barr nuclear antigen 1 induces expression of the cellular microRNA hsa-miR-127 and impairing B-cell differentiation in EBV-infected memory B cells. New insights into the pathogenesis of Burkitt lymphoma. Blood Cancer J. 2012, 2, e84.
33. Song, L.; Liu, H.; Gao, S.; Jiang, W.; Huang, W. Cellular microRNAs inhibit replication of the H1N1 influenza A virus in infected cells. J. Virol. 2010, 84, 8849-8860.
34. Terrier, O.; Textoris, J.; Carron, C.; Marcel, V.; Bourdon, J.C.; Rosa-Calatrava, M. Host microRNA molecular signatures associated with human H1N1 and H3N2 influenza A viruses reveal an unanticipated antiviral activity for miR-146a. J. Gen. Virol. 2013, 94, 985-995.
35. Vasilescu, C.; Rossi, S.; Shimizu, M.; Tudor, S.; Veronese, A.; Ferracin, M.; Nicoloso, M.S.; Barbarotto, E.; Popa, M.; Stanciulea, O. et al. MicroRNA fingerprints identify miR-150 as a plasma prognostic marker in patients with sepsis. PLoS One 2009, 4, e7405.
36. Ji, F.; Yang, B.; Peng, X.; Ding, H.; You, H.; Tien, P. Circulating microRNAs in hepatitis B virus-infected patients. J. Viral. Hepat. 2011, 18, e242-e251.
37. Li, L.M.; Hu, Z.B.; Zhou, Z.X.; Chen, X.; Liu, F.Y.; Zhang, J.F.; Shen, H.B.; Zhang, C.Y.; Zen, K. Serum microRNA profiles serve as novel biomarkers for HBV infection and diagnosis of HBV-positive hepatocarcinoma. Cancer Res. 2010, 70, 9798-9807.
38. Xu, J.; Wu, C.; Che, X.; Wang, L.; Yu, D.; Zhang, T.; Huang, L.; Li, H.; Tan, W.; Wang, C. et al. Circulating microRNAs, miR-21, miR-122, and miR-223, in patients with hepatocellular carcinoma or chronic hepatitis. Mol. Carcinog. 2011, 50, 136-142.
39. Tambyah, P.A.; Sepramaniam, S.; Mohamed Ali, J.; Chai, S.C.; Swaminathan, P.; Armugam, A.; Jeyaseelan, K. Micrornas in circulation are altered in response to influenza A virus infection in humans. PLoS One 2013, 8, e76811.
40. Mitchell, P.S.; Parkin, R.K.; Kroh, E.M.; Fritz, B.R.; Wyman, S.K.; Pogosova-Agadjanyan, E.L.; Peterson, A.; Noteboom, J.; O'Briant, K.C.; Allen, A. et al. Circulating microRNAs as stable blood-based markers for cancer detection. Proc. Natl. Acad. Sci. USA 2008, 105, 10513-10518.
41. Ng, E.K.; Chong, W.W.; Jin, H.; Lam, E.K.; Shin, V.Y.; Yu, J.; Poon, T.C.; Ng, S.S.; Sung, J.J. Differential expression of microRNAs in plasma of patients with colorectal cancer: A potential marker for colorectal cancer screening. Gut 2009, 58, 1375-1381.
42. Huang, Z.; Huang, D.; Ni, S.; Peng, Z.; Sheng, W.; Du, X. Plasma microRNAs are promising novel biomarkers for early detection of colorectal cancer. Int. J. Cancer 2010, 127, 118-126.
43. Chen, Y.; Li, L.; Zhou, Z.; Wang, N.; Zhang, C.Y.; Zen, K. A pilot study of serum microRNA signatures as a novel biomarker for occult hepatitis B virus infection. Med. Microbiol. Immunol. 2012, 201, 389-395.