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Volumn 28, Issue 4, 2014, Pages 272-281

Mechanistic interpretation of artificial neural network-based QSAR model for prediction of cathepsin K inhibition potency

Author keywords

Cat K inhibitors; Drug design; Mechanistic interpretation; Osteoporosis; QSAR model

Indexed keywords

AMINO ACIDS; BONE; COMPUTATIONAL CHEMISTRY; DISEASES; ENZYMES; MOLECULAR GRAPHICS; NEURAL NETWORKS; STATISTICAL METHODS; SURFACE PROPERTIES;

EID: 84897486898     PISSN: 08869383     EISSN: 1099128X     Source Type: Journal    
DOI: 10.1002/cem.2617     Document Type: Article
Times cited : (10)

References (47)
  • 4
    • 0035010803 scopus 로고    scopus 로고
    • Metastatic bone disease: clinical features, pathophysiology, and treatment strategies
    • Coleman RE. Metastatic bone disease: clinical features, pathophysiology, and treatment strategies. Cancer Treat. Rev. 2001; 27: 165-176.
    • (2001) Cancer Treat. Rev. , vol.27 , pp. 165-176
    • Coleman, R.E.1
  • 5
    • 85153992171 scopus 로고    scopus 로고
    • WHO Scientific Group on the Assessment of Osteoporosis at Primary Health Care Level. Summary Meeting Report. Brussels, Belgium, 5-7 May 2004. Available at:
    • WHO Scientific Group on the Assessment of Osteoporosis at Primary Health Care Level. Summary Meeting Report. Brussels, Belgium, 5-7 May 2004. Available at: http://www.who.int/chp/topics/Osteoporosis.pdf.
  • 9
    • 0024461376 scopus 로고
    • Osteoclastic bone resorption by a polarized vacuolar proton pump
    • Blair HC, Teitelbaum SL, Ghiselli R, Gluck S. Osteoclastic bone resorption by a polarized vacuolar proton pump. Science 1989; 245: 855-857.
    • (1989) Science , vol.245 , pp. 855-857
    • Blair, H.C.1    Teitelbaum, S.L.2    Ghiselli, R.3    Gluck, S.4
  • 13
    • 0035801514 scopus 로고    scopus 로고
    • Lysosomal cysteine proteases: facts and opportunities
    • Turk V, Turk B, Turk D. Lysosomal cysteine proteases: facts and opportunities. Embo J. 2001; 20: 4629-4633.
    • (2001) Embo J. , vol.20 , pp. 4629-4633
    • Turk, V.1    Turk, B.2    Turk, D.3
  • 14
    • 15544384612 scopus 로고    scopus 로고
    • Involvement of cathepsins in the invasion, metastasis and proliferation of cancer cells
    • Nomura T, Katunuma N. Involvement of cathepsins in the invasion, metastasis and proliferation of cancer cells. J. Med. Invest. 2005; 52: 1-9.
    • (2005) J. Med. Invest. , vol.52 , pp. 1-9
    • Nomura, T.1    Katunuma, N.2
  • 15
    • 79951613664 scopus 로고    scopus 로고
    • Structure-based development of specific inhibitors for individual cathepsins and their medical applications
    • Katunuma N. Structure-based development of specific inhibitors for individual cathepsins and their medical applications. Proceedings of the Japan Academy. Series B Phys Biol Sci 2011; 87: 29-39.
    • (2011) Proceedings of the Japan Academy. Series B Phys Biol Sci , vol.87 , pp. 29-39
    • Katunuma, N.1
  • 16
    • 0030026637 scopus 로고    scopus 로고
    • Human cathepsin O2, a matrix protein-degrading cysteine protease expressed in osteoclasts
    • Bromme D, Okamoto K, Wang BB, Biroc S. Human cathepsin O2, a matrix protein-degrading cysteine protease expressed in osteoclasts. J. Biol. Chem. 1996; 271: 2126-2132.
    • (1996) J. Biol. Chem. , vol.271 , pp. 2126-2132
    • Bromme, D.1    Okamoto, K.2    Wang, B.B.3    Biroc, S.4
  • 17
    • 65749102126 scopus 로고    scopus 로고
    • Cathepsin K-a new molecular target for osteoporosis
    • Rodan SB, Duong LT. Cathepsin K-a new molecular target for osteoporosis. IBMS BoneKEy 2008; 5(1): 16-24.
    • (2008) IBMS BoneKEy , vol.5 , Issue.1 , pp. 16-24
    • Rodan, S.B.1    Duong, L.T.2
  • 20
    • 84869011778 scopus 로고    scopus 로고
    • Serum and urine bone resorption markers and pharmacokinetics of the cathepsin K inhibitor ONO-5334 after ascending single doses in post menopausal women
    • Nagase S, Hashimoto Y, Small M, Ohyama M, Kuwayama T, Deacon S. Serum and urine bone resorption markers and pharmacokinetics of the cathepsin K inhibitor ONO-5334 after ascending single doses in post menopausal women. Br. J. Clin. Pharmacol. 2012; 74: 959-970.
    • (2012) Br. J. Clin. Pharmacol. , vol.74 , pp. 959-970
    • Nagase, S.1    Hashimoto, Y.2    Small, M.3    Ohyama, M.4    Kuwayama, T.5    Deacon, S.6
  • 21
    • 84871692621 scopus 로고    scopus 로고
    • Potential role of odanacatib in the treatment of osteoporosis
    • Ng KW. Potential role of odanacatib in the treatment of osteoporosis. Clin. Interv. Aging 2012; 7: 235-247.
    • (2012) Clin. Interv. Aging , vol.7 , pp. 235-247
    • Ng, K.W.1
  • 25
    • 65549132575 scopus 로고    scopus 로고
    • Pharmacological promiscuity: dependence on compound properties and target specificity in a set of recent Roche compounds
    • Peters JU, Schnider P, Mattei P, Kansy M. Pharmacological promiscuity: dependence on compound properties and target specificity in a set of recent Roche compounds. ChemMedChem 2009; 4: 680-686.
    • (2009) ChemMedChem , vol.4 , pp. 680-686
    • Peters, J.U.1    Schnider, P.2    Mattei, P.3    Kansy, M.4
  • 28
    • 0020068152 scopus 로고
    • Self-organized formation of topologically correct feature maps
    • Kohonen T. Self-organized formation of topologically correct feature maps. Biol. Cybern. 1982; 43: 59-69.
    • (1982) Biol. Cybern. , vol.43 , pp. 59-69
    • Kohonen, T.1
  • 29
    • 0030737774 scopus 로고    scopus 로고
    • Kohonen and counterpropagation artificial neural networks in analytical chemistry
    • Zupan J, Novič M, Ruisanchez I. Kohonen and counterpropagation artificial neural networks in analytical chemistry. Chemometr. Intell. Lab. Syst. 1997; 38: 1-23.
    • (1997) Chemometr. Intell. Lab. Syst. , vol.38 , pp. 1-23
    • Zupan, J.1    Novič, M.2    Ruisanchez, I.3
  • 30
    • 84866731321 scopus 로고    scopus 로고
    • Prediction of aqueous solubility of drug-like molecules using a novel algorithm for automatic adjustment of relative importance of descriptors implemented in counter-propagation artificial neural networks
    • Erić S, Kalinić M, Popović A, Zloh M, Kuzmanovski I. Prediction of aqueous solubility of drug-like molecules using a novel algorithm for automatic adjustment of relative importance of descriptors implemented in counter-propagation artificial neural networks. Int. J. Pharm. 2012; 437(1-2): 232-241.
    • (2012) Int. J. Pharm. , vol.437 , Issue.1-2 , pp. 232-241
    • Erić, S.1    Kalinić, M.2    Popović, A.3    Zloh, M.4    Kuzmanovski, I.5
  • 31
    • 65149104412 scopus 로고    scopus 로고
    • Automatic adjustment of the relative importance of different input variables for optimization of counter-propagation artificial neural networks
    • Kuzmanovski I, Novič M, Trpkovska M. Automatic adjustment of the relative importance of different input variables for optimization of counter-propagation artificial neural networks. Anal. Chim. Acta 2009; 642(1/2): 142-147.
    • (2009) Anal. Chim. Acta , vol.642 , Issue.1-2 , pp. 142-147
    • Kuzmanovski, I.1    Novič, M.2    Trpkovska, M.3
  • 32
    • 84871397497 scopus 로고    scopus 로고
    • Assessment of applicability domain for multivariate counter-propagation artificial neural network predictive models by minimum Euclidean distance space analysis: a case study
    • Minovski N, Zuperl S, Drgan V, Novič M. Assessment of applicability domain for multivariate counter-propagation artificial neural network predictive models by minimum Euclidean distance space analysis: a case study. Anal. Chim. Acta 2013; 759: 28-42.
    • (2013) Anal. Chim. Acta , vol.759 , pp. 28-42
    • Minovski, N.1    Zuperl, S.2    Drgan, V.3    Novič, M.4
  • 33
    • 0842341771 scopus 로고
    • The development and use of quantum-mechanical molecular-models .76. am1-a new general-purpose quantum-mechanical molecular-model
    • Dewar MJS, Zoebisch EG, Healy EF, Stewart JJP. The development and use of quantum-mechanical molecular-models .76. am1-a new general-purpose quantum-mechanical molecular-model. J. Am. Chem. Soc. 1985; 107: 3902-3909.
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 3902-3909
    • Dewar, M.J.S.1    Zoebisch, E.G.2    Healy, E.F.3    Stewart, J.J.P.4
  • 34
    • 80053386882 scopus 로고    scopus 로고
    • Experimental determination and prediction of bilitranslocase transport activity
    • Zuperl S, Fornasaro S, Novič M, Passamonti S. Experimental determination and prediction of bilitranslocase transport activity. Anal. Chim. Acta 2011; 705: 322-333.
    • (2011) Anal. Chim. Acta , vol.705 , pp. 322-333
    • Zuperl, S.1    Fornasaro, S.2    Novič, M.3    Passamonti, S.4
  • 36
    • 41149096934 scopus 로고    scopus 로고
    • Structural features of diverse ligands influencing binding affinities to estrogen alpha and estrogen beta receptors. Part II. Molecular descriptors calculated from conformation of the ligands in the complex resulting from previous docking study
    • Spreafico M, Boriani E, Benfenati E, Novič M. Structural features of diverse ligands influencing binding affinities to estrogen alpha and estrogen beta receptors. Part II. Molecular descriptors calculated from conformation of the ligands in the complex resulting from previous docking study. Mol. Divers. 2007; 11: 171-181.
    • (2007) Mol. Divers. , vol.11 , pp. 171-181
    • Spreafico, M.1    Boriani, E.2    Benfenati, E.3    Novič, M.4
  • 37
    • 41149120453 scopus 로고    scopus 로고
    • Structural features of diverse ligands influencing binding affinities to estrogen alpha and estrogen beta receptors. Part I: molecular descriptors calculated from minimal energy conformation of isolated ligands
    • Boriani E, Spreafico M, Benfenati E, Novič M. Structural features of diverse ligands influencing binding affinities to estrogen alpha and estrogen beta receptors. Part I: molecular descriptors calculated from minimal energy conformation of isolated ligands. Mol. Divers. 2007; 11: 153-169.
    • (2007) Mol. Divers. , vol.11 , pp. 153-169
    • Boriani, E.1    Spreafico, M.2    Benfenati, E.3    Novič, M.4
  • 38
    • 28944454142 scopus 로고    scopus 로고
    • Variable selection and interpretation in structure-affinity correlation modeling of estrogen receptor binders
    • Marini F, Roncaglioni A, Novič M. Variable selection and interpretation in structure-affinity correlation modeling of estrogen receptor binders. J. Chem. Inf. Model. 2005; 45: 1507-1519.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 1507-1519
    • Marini, F.1    Roncaglioni, A.2    Novič, M.3
  • 39
    • 0343017182 scopus 로고
    • Investigation of infrared spectra-structure correlation using Kohonen and counterpropagation neural network
    • Novič M, Zupan J. Investigation of infrared spectra-structure correlation using Kohonen and counterpropagation neural network. J. Chem. Inf. Comput. Sci. 1995; 35: 454-466.
    • (1995) J. Chem. Inf. Comput. Sci. , vol.35 , pp. 454-466
    • Novič, M.1    Zupan, J.2
  • 40
    • 58149397336 scopus 로고    scopus 로고
    • Kohonen and counter-propagation neural networks applied for mapping and interpretation of IR spectra
    • Livingston DJ (ed.). Humana Press
    • Novič M. Kohonen and counter-propagation neural networks applied for mapping and interpretation of IR spectra. In Artificial Neural Networks: Methods and Applications, Livingston DJ (ed.). Humana Press, 2008; 45-60.
    • (2008) Artificial Neural Networks: Methods and Applications , pp. 45-60
    • Novič, M.1
  • 41
    • 80053295024 scopus 로고    scopus 로고
    • Real external predictivity of QSAR models: how to evaluate it? Comparison of different validation criteria and proposal of using the concordance correlation coefficient
    • Chirico N, Gramatica P. Real external predictivity of QSAR models: how to evaluate it? Comparison of different validation criteria and proposal of using the concordance correlation coefficient. J. Chem. Inf. Model. 2011; 51: 2320-2335.
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 2320-2335
    • Chirico, N.1    Gramatica, P.2
  • 42
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • Lin LI-K. A concordance correlation coefficient to evaluate reproducibility. Biometrics 1989; 45: 255-268.
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.-K.1
  • 43
    • 0026708519 scopus 로고
    • Assay validation using the concordance correlation coefficient
    • Lin LI-K. Assay validation using the concordance correlation coefficient. Biometrics 1992; 48: 599-604.
    • (1992) Biometrics , vol.48 , pp. 599-604
    • Lin, L.-K.1
  • 44
    • 84875893961 scopus 로고    scopus 로고
    • Some case studies on application of "rm2" metrics for judging quality of quantitative structure-activity relationship predictions: emphasis on scaling of response data
    • Roy K, Chakraborty P, Mitra I, Ojha PK, Kar S, Das NR. Some case studies on application of "rm2" metrics for judging quality of quantitative structure-activity relationship predictions: emphasis on scaling of response data. J. Comput. Chem. 2013; 34: 1071-1082.
    • (2013) J. Comput. Chem. , vol.34 , pp. 1071-1082
    • Roy, K.1    Chakraborty, P.2    Mitra, I.3    Ojha, P.K.4    Kar, S.5    Das, N.R.6
  • 45
    • 69349088267 scopus 로고    scopus 로고
    • Self organising maps for variable selection: application to human saliva analysed by nuclear magnetic resonance spectroscopy to investigate the effect of an oral healthcare product
    • Lloyd GR, Wongravee K, Silwood CJL, Grootveld M, Brereton RG. Self organising maps for variable selection: application to human saliva analysed by nuclear magnetic resonance spectroscopy to investigate the effect of an oral healthcare product. Chemometr. Intell. Lab. Syst. 2009; 98: 149-161.
    • (2009) Chemometr. Intell. Lab. Syst. , vol.98 , pp. 149-161
    • Lloyd, G.R.1    Wongravee, K.2    Silwood, C.J.L.3    Grootveld, M.4    Brereton, R.G.5
  • 47
    • 0012906771 scopus 로고    scopus 로고
    • Summary of a workshop on regulatory acceptance of (Q)SARs for human health and environmental endpoints
    • Jaworska J, Comber M, Leeuwen CV, Auer C. Summary of a workshop on regulatory acceptance of (Q)SARs for human health and environmental endpoints. Environ. Health Perspect. 2003; 111: 1358-1360.
    • (2003) Environ. Health Perspect. , vol.111 , pp. 1358-1360
    • Jaworska, J.1    Comber, M.2    Leeuwen, C.V.3    Auer, C.4


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