메뉴 건너뛰기




Volumn 9, Issue 1, 2014, Pages

Two-step source tracing strategy of yersinia pestis and its historical epidemiology in a specific region

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM EXAMINATION; CHINA; EPIDEMIC; EPIDEMIOLOGICAL DATA; GENE SEQUENCE; GENETIC VARIABILITY; HISTORICAL RESEARCH; INFECTION PREVENTION; MOLECULAR MECHANICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PHYLOGENY; PLAGUE; TWO STEP SOURCE TRACING STRATEGY; YERSINIA PESTIS;

EID: 84897411734     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0085374     Document Type: Article
Times cited : (8)

References (41)
  • 1
    • 31344452948 scopus 로고    scopus 로고
    • Molecular and physiological insights into plague transmission, virulence and etiology
    • DOI 10.1016/j.micinf.2005.06.006, PII S1286457905002327
    • Zhou D, Han Y, Yang R (2006) Molecular and physiological insights into plague transmission, virulence and etiology. Microbes Infect 8: 273-284. (Pubitemid 43139316)
    • (2006) Microbes and Infection , vol.8 , Issue.1 , pp. 273-284
    • Zhou, D.1    Han, Y.2    Yang, R.3
  • 3
    • 34047126253 scopus 로고    scopus 로고
    • Plague
    • DOI 10.1016/S0140-6736(07)60566-2, PII S0140673607605662
    • Prentice MB, Rahalison L (2007) Plague. Lancet 369: 1196-1207. (Pubitemid 46527877)
    • (2007) Lancet , vol.369 , Issue.9568 , pp. 1196-1207
    • Prentice, M.B.1    Rahalison, L.2
  • 4
    • 0038348778 scopus 로고    scopus 로고
    • Human plague in 2000 and 2001
    • WHO
    • WHO (2003) Human plague in 2000 and 2001. Wkly Epidemiol Rec 78: 130-135.
    • (2003) Wkly Epidemiol Rec , vol.78 , pp. 130-135
  • 5
    • 16344374525 scopus 로고    scopus 로고
    • Select agents. Researchers relieved by final biosecurity rules
    • Kaiser J (2005) Select agents. Researchers relieved by final biosecurity rules. Science 308: 31.
    • (2005) Science , vol.308 , pp. 31
    • Kaiser, J.1
  • 7
    • 84897434550 scopus 로고    scopus 로고
    • Microbial Forensics: A Powerful Tool for Pursuing Bioterrorism Perpetrators and the Need for an International Database
    • doi:10.4172/2157-2526.S3-007
    • Yang RF, Keim P (2012) Microbial Forensics: A Powerful Tool for Pursuing Bioterrorism Perpetrators and the Need for an International Database. J Bioterr Biodef S3:007. doi:10.4172/2157-2526.S3-007.
    • (2012) J Bioterr Biodef , vol.S3 , pp. 007
    • Yang, R.F.1    Keim, P.2
  • 8
    • 0033598784 scopus 로고    scopus 로고
    • Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
    • Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, et al. (1999) Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 96: 14043-14048.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 14043-14048
    • Achtman, M.1    Zurth, K.2    Morelli, G.3    Torrea, G.4    Guiyoule, A.5
  • 9
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
    • Achtman M (2008) Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol 62: 53-70.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 53-70
    • Achtman, M.1
  • 10
    • 78649470145 scopus 로고    scopus 로고
    • Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
    • Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, et al. (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet 42: 1140-1143.
    • (2010) Nat Genet , vol.42 , pp. 1140-1143
    • Morelli, G.1    Song, Y.2    Mazzoni, C.J.3    Eppinger, M.4    Roumagnac, P.5
  • 12
    • 48249123432 scopus 로고    scopus 로고
    • Different region analysis for genotyping Yersinia pestis isolates from China
    • Li Y, Dai E, Cui Y, Li M, Zhang Y, et al. (2008) Different region analysis for genotyping Yersinia pestis isolates from China. PLoS One 3: e2166.
    • (2008) PLoS One , vol.3
    • Li, Y.1    Dai, E.2    Cui, Y.3    Li, M.4    Zhang, Y.5
  • 13
    • 67650159715 scopus 로고    scopus 로고
    • Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: Insights into the worldwide expansion of Central Asia plague foci
    • Li Y, Cui Y, Hauck Y, Platonov ME, Dai E, et al. (2009) Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci. PLoS One 4: e6000.
    • (2009) PLoS One , vol.4
    • Li, Y.1    Cui, Y.2    Hauck, Y.3    Platonov, M.E.4    Dai, E.5
  • 15
    • 50349083723 scopus 로고    scopus 로고
    • Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats
    • Cui Y, Li Y, Gorge O, Platonov ME, Yan Y, et al. (2008) Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats. PLoS One 3: e2652.
    • (2008) PLoS One , vol.3
    • Cui, Y.1    Li, Y.2    Gorge, O.3    Platonov, M.E.4    Yan, Y.5
  • 17
    • 70649084195 scopus 로고    scopus 로고
    • Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies
    • Comas I, Homolka S, Niemann S, Gagneux S (2009) Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies. PLoS One 4: e7815.
    • (2009) PLoS One , vol.4
    • Comas, I.1    Homolka, S.2    Niemann, S.3    Gagneux, S.4
  • 18
    • 84879265083 scopus 로고    scopus 로고
    • Features of Variable Number of Tandem Repeats in Yersinia pestis and the Development of a Hierarchical Genotyping Scheme
    • Li Y, Cui Y, Cui B, Yan Y, Yang X, et al. (2013) Features of Variable Number of Tandem Repeats in Yersinia pestis and the Development of a Hierarchical Genotyping Scheme. PLoS One 8: e66567.
    • (2013) PLoS One , vol.8
    • Li, Y.1    Cui, Y.2    Cui, B.3    Yan, Y.4    Yang, X.5
  • 23
    • 70349976991 scopus 로고    scopus 로고
    • Fine-scale identification of the most likely source of a human plague infection
    • Colman RE, Vogler AJ, Lowell JL, Gage KL, Morway C, et al. (2009) Fine-scale identification of the most likely source of a human plague infection. Emerg Infect Dis 15: 1623-1625.
    • (2009) Emerg Infect Dis , vol.15 , pp. 1623-1625
    • Colman, R.E.1    Vogler, A.J.2    Lowell, J.L.3    Gage, K.L.4    Morway, C.5
  • 24
    • 75649084906 scopus 로고    scopus 로고
    • Evolution of MRSA during hospital transmission and intercontinental spread
    • Harris SR, Feil EJ, Holden MT, Quail MA, Nickerson EK, et al. (2010) Evolution of MRSA during hospital transmission and intercontinental spread. Science 327: 469-474.
    • (2010) Science , vol.327 , pp. 469-474
    • Harris, S.R.1    Feil, E.J.2    Holden, M.T.3    Quail, M.A.4    Nickerson, E.K.5
  • 25
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
    • Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, et al. (2008) High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet 40: 987-993.
    • (2008) Nat Genet , vol.40 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5
  • 26
  • 27
    • 71049152453 scopus 로고    scopus 로고
    • Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
    • Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, et al. (2009) Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol 7: 78.
    • (2009) BMC Biol , vol.7 , pp. 78
    • Pearson, T.1    Giffard, P.2    Beckstrom-Sternberg, S.3    Auerbach, R.4    Hornstra, H.5
  • 29
    • 79951995822 scopus 로고    scopus 로고
    • Wholegenome sequencing and social-network analysis of a tuberculosis outbreak
    • Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, et al. (2011) Wholegenome sequencing and social-network analysis of a tuberculosis outbreak. N Engl J Med 364: 730-739.
    • (2011) N Engl J Med , vol.364 , pp. 730-739
    • Gardy, J.L.1    Johnston, J.C.2    Ho Sui, S.J.3    Cook, V.J.4    Shah, L.5
  • 30
    • 84865323065 scopus 로고    scopus 로고
    • Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
    • Snitkin ES, Zelazny AM, Thomas PJ, Stock F, Henderson DK, et al. (2012) Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med 4: 148ra116.
    • (2012) Sci Transl Med , vol.4
    • Snitkin, E.S.1    Zelazny, A.M.2    Thomas, P.J.3    Stock, F.4    Henderson, D.K.5
  • 31
    • 79951837363 scopus 로고    scopus 로고
    • A dog-associated primary pneumonic plague in Qinghai Province, China
    • Wang H, Cui Y, Wang Z, Wang X, Guo Z, et al. (2011) A dog-associated primary pneumonic plague in Qinghai Province, China. Clin Infect Dis 52: 185-190.
    • (2011) Clin Infect Dis , vol.52 , pp. 185-190
    • Wang, H.1    Cui, Y.2    Wang, Z.3    Wang, X.4    Guo, Z.5
  • 32
    • 84872185929 scopus 로고    scopus 로고
    • Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis
    • Cui Y, Yu C, Yan Y, Li D, Li Y, et al. (2013) Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. Proc Natl Acad Sci U S A 110: 577-582.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 577-582
    • Cui, Y.1    Yu, C.2    Yan, Y.3    Li, D.4    Li, Y.5
  • 33
    • 84897454156 scopus 로고
    • BeijingChina: People's medical publishing house
    • Ji S (1988) Plague. BeijingChina: People's medical publishing house. 10-24 p.
    • (1988) Plague , pp. 10-24
    • Ji, S.1
  • 34
    • 80052173621 scopus 로고    scopus 로고
    • Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4
    • Rohde H, Qin J, Cui Y, Li D, Loman NJ, et al. (2011) Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 365: 718-724.
    • (2011) N Engl J Med , vol.365 , pp. 718-724
    • Rohde, H.1    Qin, J.2    Cui, Y.3    Li, D.4    Loman, N.J.5
  • 36
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272.
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5
  • 37
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oligonucleotide alignment program
    • DOI 10.1093/bioinformatics/btn025
    • Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24: 713-714. (Pubitemid 351321217)
    • (2008) Bioinformatics , vol.24 , Issue.5 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 39
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 40
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
    • DOI 10.1093/bib/bbn017, Special Issue: Critical Technologies for Bioinformatics
    • Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306. (Pubitemid 351890826)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 41
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
    • DOI 10.1093/bioinformatics/bti191
    • Stamatakis A, Ludwig T, Meier H (2005) RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456-463. (Pubitemid 40310232)
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.