Different region analysis for genotyping Yersinia pestis isolates from China

PLoS ONE

Volumn 3, Issue 5, 2008, Pages

  Li, Yanjun ^a   Dai, Erhei ^a   Cui, Yujun ^a   Li, Min ^b   Zhang, Yujiang ^c   Wu, Mingshou ^d   Zhou, Dongsheng ^a   Guo, Zhaobiao ^a   Dai, Xiang ^c   Cui, Baizhong ^b   Qi, Zhizhen ^b   Wang, Zuyun ^b   Wang, Hu ^b   Dong, Xingqi ^d   Song, Zhizhong ^d   Zhai, Junhui ^a   Song, Yajun ^a   Yang, Ruifu ^a  

^a BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^b Qinghai Institute for Endemic Disease Prevention and Control   (China)

^c Center for Disease Control and Prevention of Xinjiang Uygur Autonomous Region   (China)

^d Yunnan Institute for Endemic Disease Control and Prevention   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; BIOTYPE; CHINA; COMPUTER MODEL; DIFFERENT REGION ANALYSIS; GENOME ANALYSIS; GENOTYPE; HORIZONTAL GENE TRANSFER; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; YERSINIA PESTIS; YERSINIA PSEUDOTUBERCULOSIS; BACTERIAL GENE; GENETICS; POLYMERASE CHAIN REACTION;

YERSINIA PESTIS; YERSINIA PSEUDOTUBERCULOSIS;

PRIMER DNA;

BASE SEQUENCE; CHINA; DNA PRIMERS; GENES, BACTERIAL; GENOTYPE; POLYMERASE CHAIN REACTION; YERSINIA PESTIS; YERSINIA PSEUDOTUBERCULOSIS;

EID: 48249123432     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002166     Document Type: Article

References (35)

1. Perry RD, Fetherston JD (1997) Yersinia pestis-etiologic agent of plague. Clin Microbiol Rev 10: 35-66.
2. Broussard LA (2001) Biological agents: weapons of warfare and bioterrorism. Mol Diagn 6: 323-333.
3. Achtman M, Morelli G, Zhu P, Wirth T, Diehl I, et al. (2004) Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A 101: 17837-17842.
4. Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, et al. (1999) Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 96: 14043-14048.
5. Song Y, Tong Z, Wang J, Wang L, Guo Z, et al. (2004) Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans. DNA Res 11: 179-197.
6. Zhou D, Tong Z, Song Y, Han Y, Pei D, et al. (2004) Genetics of Metabolic Variations between Yersinia pestis Biovars and the Proposal of a New Biovar, microtus. J Bacteriol 186: 5147-5152.
7. Anisimov AP, Lindler LE, Pier GB (2004) Intraspecific diversity of Yersinia pestis. Clin Microbiol Rev 17: 434-464.
8. Guiyoule A, Grimont F, Iteman I, Grimont PA, Lefevre M, et al. (1994) Plague pandemics investigated by ribotyping of Yersinia pestis strains. J Clin Microbiol 32: 634-641.
9. Huang XZ, Chu MC, Engelthaler DM, Lindler LE (2002) Genotyping of a homogeneous group of Yersinia pestis strains isolated in the United States. J Clin Microbiol 40: 1164-1173.
10. Adair DM, Worsham PL, Hill KK, Klevytska AM, Jackson PJ, et al. (2000) Diversity in a variable-number tandem repeat from Yersinia pestis. J Clin Microbiol 38: 1516-1519.
11. Klevytska AM, Price LB, Schupp JM, Worsham PL, Wong J, et al. (2001) Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J Clin Microbiol 39: 3179-3185.
12. Pourcel C, Andre-Mazeaud F, Neubauer H, Ramisse F, Vergnaud G (2004) Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. BMC Microbiol 4: 22.
13. Guiyoule A, Grimont F, Iteman I, Grimont PA, Lefevre M, Carniel E (1994) Plague pandemics investigated by ribotyping of Yersinia pestis strains. J Clin Microbiol 32: 634-641.
14. Yu DZ, Hai R, Dong XQ, Li M, Xia LX, Shi XM, Wei JC, Cui BZ, Wang P, Sun LZ, Zhang ZK, Hu Y, Zhang EM (2003) Genetic analysis of Yersinia pestis strains isolated in China. Zhonghua Liu Xing Bing Xue Za Zhi 24: 1005-1009.
15. Huang F, Yu D, Hai R, Cai H (2000) Study on the application of random amplified polymorphic DNA in Yersinia pestis genotyping. Zhonghua Liu Xing Bing Xue Za Zhi 21: 424-426.
16. Guiyoule A, Rasoamanana B, Buchrieser C, Michel P, Chanteau S, et al. (1997) Recent emergence of new variants of Yersinia pestis in Madagascar. J Clin Microbiol 35: 2826-2833.
17. Hai R, Yu DZ, Wei JC, Xia LX, Shi XM, Zhang ZK, Zhang EM (2004) Molecular biological characteristics and genetic significance of Yersinia pestis in China. Zhonghua Liu Xing Bing Xue Za Zhi 25: 509-513.
18. Radnedge L, Agron PG, Worsham PL, Andersen GL (2002) Genome plasticity in Yersinia pestis. Microbiology 148: 1687-1698.
19. Hinchliffe SJ, Isherwood KE, Stabler RA, Prentice MB, Rakin A, et al. (2003) Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis. Genome Res 13: 2018-2029.
20. Zhou D, Han Y, Song Y, Tong Z, Wang J, et al. (2004) DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation. J Bacteriol 186: 5138-5146.
21. Dai E, Tong Z, Wang X, Li M, Cui B, et al. (2005) Identification of different regions among strains of Yersinia pestis by suppression subtractive hybridization. Res Microbiol 156: 785-789.
22. Pourcel C, Salvignol G, Vergnaud G (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151: 653-663.
23. Zhang G, Zhang G, Wang S, SUn Q, Shan G (2002) Survey of natural plague foci and epidemic situation in China. Chin J Ctrl Endem Dis 71: 101-103.
24. Chain PS, Hu P, Malfatti SA, Radnedge L, Larimer F, et al. (2006) Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J Bacteriol 188: 4453-4463.
25. Deng W, Burland V, Plunkett G 3rd, Boutin A, Mayhew GF, et al. (2002) Genome sequence of Yersinia pestis KIM. J Bacteriol 184: 4601-4611.
26. Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, et al. (2001) Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413: 523-527.
27. Auerbach RK, Tuanyok A, Probert WS, Kenefic L, Vogler AJ, et al. (2007) Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. PLoS ONE 2: e770.
28. Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, et al. (2007) Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS ONE 2: e309.
29. Touchman JW, Wagner DM, Hao J, Mastrian SD, Shah MK, et al. (2007) A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. PLoS ONE 2: e220.
30. Garcia E, Worsham P, Bearden S, Malfatti S, Lang D, et al. (2007) Pestoides F, an atypical Yersinia pestis strain from the former Soviet Union. Adv Exp Med Biol 603: 17-22.
31. Devignat R (1951) [Varieties of Pasteurella pestis; new hypothesis]. Bull World Health Organ 4: 247-263.
32. Wren BW (2003) The yersiniae-a model genus to study the rapid evolution of bacterial pathogens. Nat Rev Microbiol 1: 55-64.
33. Jiang W (2005) First isolation of Yersinia pestis from Rhombomys opimus in the Junggar Basin of Xinjiang. Chinese Journal of Zoonoses 21: 1051-1051.
34. Derbise A, Chenal-Francisque V, Pouillot F, Fayolle C, Prevost MC, et al. (2007) A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus. Mol Microbiol..
35. Chain PS, Carniel E, Larimer FW, Lamerdin J, Stoutland PO, et al. (2004) Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 101: 13826-13831.