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Volumn 9, Issue 1, 2014, Pages

A reporter assay in lamprey embryos reveals both functional conservation and elaboration of vertebrate enhancers

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; HOX PROTEIN;

EID: 84897389631     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0085492     Document Type: Article
Times cited : (29)

References (37)
  • 1
    • 26444482460 scopus 로고    scopus 로고
    • Molecular phylogeny and divergence times of deuterostome animals
    • DOI 10.1093/molbev/msi225
    • Blair JE, Hedges SB (2005) Molecular phylogeny and divergence times of deuterostome animals. Mol Biol Evol 22: 2275-2284. (Pubitemid 41437808)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.11 , pp. 2275-2284
    • Blair, J.E.1    Hedges, S.B.2
  • 2
    • 0037123637 scopus 로고    scopus 로고
    • Heterotopic shift of epithelial-mesenchymal interactions in vertebrate jaw evolution
    • DOI 10.1126/science.1068310
    • Shigetani Y, Sugahara F, Kawakami Y, Murakami Y, Hirano S, et al. (2002) Heterotopic shift of epithelial-mesenchymal interactions in vertebrate jaw evolution. Science. 296: 1316-1319. (Pubitemid 34522786)
    • (2002) Science , vol.296 , Issue.5571 , pp. 1316-1319
    • Shigetani, Y.1    Sugahara, F.2    Kawakami, Y.3    Murakami, Y.4    Hirano, S.5    Kuratani, S.6
  • 4
    • 33748305741 scopus 로고    scopus 로고
    • Evidence that mechanisms of fin development evolved in the midline of early vertebrates
    • DOI 10.1038/nature04984, PII NATURE04984
    • Freitas R, Zhang G, Cohn MJ (2006) Evidence that mechanisms of fin development evolved in the midline of early vertebrates. Nature. 442: 1033-1037. (Pubitemid 44330259)
    • (2006) Nature , vol.442 , Issue.7106 , pp. 1033-1037
    • Freitas, R.1    Zhang, G.2    Cohn, M.J.3
  • 5
    • 0037672521 scopus 로고    scopus 로고
    • Neural crest contributions to the lamprey head
    • DOI 10.1242/dev.00451
    • McCauley DW, Bronner-Fraser M (2003) Neural crest contributions to the lamprey head. Development. 130: 2317-2327. (Pubitemid 36722384)
    • (2003) Development , vol.130 , Issue.11 , pp. 2317-2327
    • McCauley, D.W.1    Bronner-Fraser, M.2
  • 6
    • 34548168615 scopus 로고    scopus 로고
    • Ancient Evolutionary Origin of the Neural Crest Gene Regulatory Network
    • DOI 10.1016/j.devcel.2007.08.005, PII S153458070700305X
    • Sauka-Spengler T, Meulemans D, Jones M, Bronner-Fraser M (2007) Ancient evolutionary origin of the neural crest gene regulatory network. Dev Cell. 13: 405-420. (Pubitemid 47308682)
    • (2007) Developmental Cell , vol.13 , Issue.3 , pp. 405-420
    • Sauka-Spengler, T.1    Meulemans, D.2    Jones, M.3    Bronner-Fraser, M.4
  • 7
    • 33744999415 scopus 로고    scopus 로고
    • Importance of SoxE in neural crest development and the evolution of the pharynx
    • DOI 10.1038/nature04691, PII N04691
    • McCauley DW, Bronner-Fraser M (2006) Importance of SoxE in neural crest development and the evolution of the pharynx. Nature. 441: 750-752. (Pubitemid 43865220)
    • (2006) Nature , vol.441 , Issue.7094 , pp. 750-752
    • McCauley, D.W.1    Bronner-Fraser, M.2
  • 8
    • 3142616423 scopus 로고    scopus 로고
    • Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey
    • DOI 10.1038/nature02740
    • Pancer Z, Amemiya CT, Ehrhardt GR, Ceitlin J, Gartland GL, et al. (2004) Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey. Nature. 430: 174-180. (Pubitemid 38902420)
    • (2004) Nature , vol.430 , Issue.6996 , pp. 174-180
    • Pamcer, Z.1    Amemiya, C.T.2    Ehrhardt, G.R.A.3    Coitlin, J.4    Gartland, G.L.5    Cooper, M.D.6
  • 9
    • 84858767464 scopus 로고    scopus 로고
    • Expression of sympathetic nervous system genes in Lamprey suggests their recruitment for specification of a new vertebrate feature
    • Häming D, Simoes-Costa M, Uy B, Valencia J, Sauka-Spengler T, et al. (2011). Expression of sympathetic nervous system genes in Lamprey suggests their recruitment for specification of a new vertebrate feature. PloS one, 6(10), e26543.
    • (2011) PloS One , vol.6 , Issue.10
    • Häming, D.1    Simoes-Costa, M.2    Uy, B.3    Valencia, J.4    Sauka-Spengler, T.5
  • 10
    • 65449134311 scopus 로고    scopus 로고
    • Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates
    • Guérin A, d'Aubenton-Carafa Y, Marrakchi E, Da Silva C, Wincker P, et al. (2009) Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates. PLoS One. 4: e5374.
    • (2009) PLoS One , vol.4
    • Guérin, A.1    D'Aubenton-Carafa, Y.2    Marrakchi, E.3    Da Silva, C.4    Wincker, P.5
  • 11
    • 79955125948 scopus 로고    scopus 로고
    • Involvement of Hedgehog and FGF signalling in the lamprey telencephalon: Evolution of regionalization and dorsoventral patterning of the vertebrate forebrain
    • Sugahara F, Aota S, Kuraku S, Murakami Y, Takio-Ogawa Y, et al. (2011) Involvement of Hedgehog and FGF signalling in the lamprey telencephalon: evolution of regionalization and dorsoventral patterning of the vertebrate forebrain. Development. 138: 1217-1226.
    • (2011) Development , vol.138 , pp. 1217-1226
    • Sugahara, F.1    Aota, S.2    Kuraku, S.3    Murakami, Y.4    Takio-Ogawa, Y.5
  • 12
    • 1642283513 scopus 로고    scopus 로고
    • Segmental development of reticulospinal and branchiomotor neurons in lamprey: Insights into the evolution of the vertebrate hindbrain
    • DOI 10.1242/dev.00986
    • Murakami Y, Pasqualetti M, Takio Y, Hirano S, Rijli FM, et al. (2004) Segmental development of reticulospinal and branchiomotor neurons in lamprey: insights into the evolution of the vertebrate hindbrain. Development. 131: 983-995. (Pubitemid 38380453)
    • (2004) Development , vol.131 , Issue.5 , pp. 983-995
    • Murakami, Y.1    Pasqualetti, M.2    Takio, Y.3    Hirano, S.4    Rijli, F.M.5    Kuratani, S.6
  • 13
    • 0034787476 scopus 로고    scopus 로고
    • Identification and expression of the lamprey Pax6 gene: Evolutionary origin of the segmented brain of vertebrates
    • Murakami Y, Ogasawara M, Sugahara F, Hirano S, Satoh N, et al. (2001). Identification and expression of the lamprey Pax6 gene: evolutionary origin of the segmented brain of vertebrates. Development. 128: 3521-3531. (Pubitemid 32962720)
    • (2001) Development , vol.128 , Issue.18 , pp. 3521-3531
    • Murakami, Y.1    Ogasawara, M.2    Sugahara, F.3    Hirano, S.4    Satoh, N.5    Kuratani, S.6
  • 14
    • 65649134778 scopus 로고    scopus 로고
    • The sea lamprey Petromyzon marinus: A model for evolutionary and developmental biology
    • 15
    • Nikitina N, Bronner-Fraser M, Sauka-Spengler T (2009) The sea lamprey Petromyzon marinus: a model for evolutionary and developmental biology. Cold Spring Harb 15. Protoc. 1: pdb-mo113.
    • (2009) Cold Spring Harb Protoc , Issue.1
    • Nikitina, N.1    Bronner-Fraser, M.2    Sauka-Spengler, T.3
  • 15
    • 84875692135 scopus 로고    scopus 로고
    • Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
    • Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, et al. (2013). Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nature genetics, 45(4), 415-421.
    • (2013) Nature Genetics , vol.45 , Issue.4 , pp. 415-421
    • Smith, J.J.1    Kuraku, S.2    Holt, C.3    Sauka-Spengler, T.4    Jiang, N.5
  • 16
    • 0031962457 scopus 로고    scopus 로고
    • Molecular evolution of Hox gene regulation: Cloning and transgenic analysis of the lamprey HoxQ8 gene
    • DOI 10.1002/(SICI)1097-010X(19980101)280:1<73::AID
    • Carr JL, Shashikant CS, Bailey WJ and Ruddle FH (1998) Molecular evolution of Hox gene regulation: cloning and transgenic analysis of the lamprey HoxQ8 gene. J Exp Zool. 280: 73-85. (Pubitemid 28042917)
    • (1998) Journal of Experimental Zoology , vol.280 , Issue.1 , pp. 73-85
    • Carr, J.L.1    Shashikant, C.S.2    Bailey, W.J.3    Ruddle, F.H.4
  • 17
    • 0034649652 scopus 로고    scopus 로고
    • Conservation and elaboration of Hox gone regulation during evolution of the vertebrate head
    • DOI 10.1038/35048570
    • Manzanares M, Wada H, Itasaki N, Trainor PA, Krumlauf R, et al. (2000) Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head. Nature. 408: 854-857. (Pubitemid 32016094)
    • (2000) Nature , vol.408 , Issue.6814 , pp. 854-857
    • Manzanares, M.1    Wada, H.2    Itasaki, N.3    Trainor, P.A.4    Krumlauf, R.5    Holland, P.W.H.6
  • 18
    • 46449088112 scopus 로고    scopus 로고
    • Insights from the amphioxus genome on the origin of vertebrate neural crest
    • DOI 10.1101/gr.076208.108
    • Yu JK, Meulemans D, McKeown SJ, Bronner-Fraser M (2008) Insights from the amphioxus genome on the origin of vertebrate neural crest. Genome Res. 18: 1127-1132. (Pubitemid 351931163)
    • (2008) Genome Research , vol.18 , Issue.7 , pp. 1127-1132
    • Yu, J.-K.1    Meulemans, D.2    McKeown, S.J.3    Bronner-Fraser, M.4
  • 19
    • 77957225928 scopus 로고    scopus 로고
    • The importance of being cis: Evolution of orthologous fish and mammalian enhancer activity
    • Ritter DI, Li Q, Kostka D, Pollard KS, Guo S, et al. (2010) The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. Mol Biol Evol. 27: 2322-2332.
    • (2010) Mol Biol Evol , vol.27 , pp. 2322-2332
    • Ritter, D.I.1    Li, Q.2    Kostka, D.3    Pollard, K.S.4    Guo, S.5
  • 20
    • 74249085481 scopus 로고    scopus 로고
    • Early evolution of conserved regulatory sequences associated with development in vertebrates
    • McEwen GK, Goode DK, Parker HJ, Woolfe A, Callaway H, et al. (2009) Early evolution of conserved regulatory sequences associated with development in vertebrates. PLoS Genet. 5: e1000762.
    • (2009) PLoS Genet , vol.5
    • McEwen, G.K.1    Goode, D.K.2    Parker, H.J.3    Woolfe, A.4    Callaway, H.5
  • 21
    • 78149433456 scopus 로고    scopus 로고
    • Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs
    • Kano S, Xiao JH, Osório J, Ekker M, Hadzhiev Y, et al. (2010) Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs. PLoS One. 5: e13332.
    • (2010) PLoS One , vol.5
    • Kano, S.1    Xiao, J.H.2    Osório, J.3    Ekker, M.4    Hadzhiev, Y.5
  • 23
    • 20044366725 scopus 로고    scopus 로고
    • Highly conserved non-coding sequences are associated with vertebrate development
    • Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, et al. (2005) Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 3: e7.
    • (2005) PLoS Biol , vol.3
    • Woolfe, A.1    Goodson, M.2    Goode, D.K.3    Snell, P.4    McEwen, G.K.5
  • 26
    • 60549097668 scopus 로고    scopus 로고
    • Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes
    • Navratilova P, Fredman D, Hawkins TA, Turner K, Lenhard B, et al. (2009) Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes. Dev Biol. 327: 526-540.
    • (2009) Dev Biol , vol.327 , pp. 526-540
    • Navratilova, P.1    Fredman, D.2    Hawkins, T.A.3    Turner, K.4    Lenhard, B.5
  • 27
    • 33645519275 scopus 로고    scopus 로고
    • Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis
    • McEwen GK, Woolfe A, Goode D, Vavouri T, Callaway H, et al. (2006) Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis. Genome Res. 16: 451-465.
    • (2006) Genome Res , vol.16 , pp. 451-465
    • McEwen, G.K.1    Woolfe, A.2    Goode, D.3    Vavouri, T.4    Callaway, H.5
  • 28
    • 79951528195 scopus 로고    scopus 로고
    • Minor change, major difference: Divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events
    • Goode DK, Callaway HA, Cerda GA, Lewis KE, Elgar G (2011) Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events. Development. 138: 879-884.
    • (2011) Development , vol.138 , pp. 879-884
    • Goode, D.K.1    Callaway, H.A.2    Cerda, G.A.3    Lewis, K.E.4    Elgar, G.5
  • 29
    • 51149097366 scopus 로고    scopus 로고
    • Human-specific gain of function in a developmental enhancer
    • Prabhakar S, Visel A, Akiyama JA, Shoukry M, Lewis KD, et al. (2008). Human-specific gain of function in a developmental enhancer. Science. 321: 1346-1350.
    • (2008) Science , vol.321 , pp. 1346-1350
    • Prabhakar, S.1    Visel, A.2    Akiyama, J.A.3    Shoukry, M.4    Lewis, K.D.5
  • 32
    • 34347244234 scopus 로고    scopus 로고
    • Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish
    • Fisher S, Grice EA, Vinton RM, Bessling SL, Urasaki A, et al. (2006) Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish. Nat Protoc. 1: 1297-1305.
    • (2006) Nat Protoc , vol.1 , pp. 1297-1305
    • Fisher, S.1    Grice, E.A.2    Vinton, R.M.3    Bessling, S.L.4    Urasaki, A.5
  • 33
    • 34248641108 scopus 로고    scopus 로고
    • High-throughput transgenesis in Xenopus using I-SceI meganuclease
    • DOI 10.1038/nprot.2006.208, PII NPROT.2006.208
    • Ogino H, McConnell WB, Grainger RM (2006) High-throughput transgenesis in Xenopus using I-SceI meganuclease. Nat Protoc. 1: 1703-1710. (Pubitemid 46773291)
    • (2006) Nature Protocols , vol.1 , Issue.4 , pp. 1703-1710
    • Ogino, H.1    McConnell, W.B.2    Grainger, R.M.3
  • 34
    • 0035202086 scopus 로고    scopus 로고
    • Cloning and expression of the TALE superclass homeobox Meis2 gene during zebrafish embryonic development
    • DOI 10.1016/S0925-4773(01)00554-8, PII S0925477301005548
    • Biemar F, Devos N, Martial JA, Driever W, Peers B (2001) Cloning and expression of the TALE superclass homeobox Meis2 gene during zebrafish embryonic development. Mech Dev 109: 427-431. (Pubitemid 33112062)
    • (2001) Mechanisms of Development , vol.109 , Issue.2 , pp. 427-431
    • Biemar, F.1    Devos, N.2    Martial, J.A.3    Driever, W.4    Peers, B.5
  • 35
    • 0035064436 scopus 로고    scopus 로고
    • Cloning and developmental expression of a zebrafish meis2 homeobox gene
    • DOI 10.1016/S0925-4773(01)00299-4, PII S0925477301002994
    • Zerucha T, Prince VE (2001) Cloning and developmental expression of a zebrafish meis2 homeobox gene. Mech Dev. 102: 247-250. (Pubitemid 32273607)
    • (2001) Mechanisms of Development , vol.102 , Issue.1-2 , pp. 247-250
    • Zerucha, T.1    Prince, V.E.2
  • 37
    • 73349128469 scopus 로고    scopus 로고
    • Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
    • Gehrig J, Reischl M, Kalmár E, Ferg M, Hadzhiev Y, et al. (2009) Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos. Nat Methods. 6: 911-916.
    • (2009) Nat Methods , vol.6 , pp. 911-916
    • Gehrig, J.1    Reischl, M.2    Kalmár, E.3    Ferg, M.4    Hadzhiev, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.