-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner,M. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
The Gene Ontology Consortium. Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
3
-
-
0033954256
-
The protein data bank
-
Berman,H.M. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
4
-
-
33746652529
-
Relation between native ensembles and experimental structures of proteins
-
Best,R.B. et al. (2006) Relation between native ensembles and experimental structures of proteins. Proc. Natl Acad. Sci. USA, 103, 10901-10906.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 10901-10906
-
-
Best, R.B.1
-
5
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
Boehr,D.D. et al. (2010) The role of dynamic conformational ensembles in biomolecular recognition. Nat. Chem. Biol., 5, 789-796.
-
(2010)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
-
6
-
-
84865129593
-
MobiDB: A comprehensive database of intrinsic protein disorder annotations
-
Di Domenico,T. et al. (2012) MobiDB: a comprehensive database of intrinsic protein disorder annotations. Bioinformatics, 28, 2080-2081.
-
(2012)
Bioinformatics
, vol.28
, pp. 2080-2081
-
-
Di Domenico, T.1
-
7
-
-
33846033844
-
The CATH domain structure database: New protocols and classification levels give a more comprehensive resource for exploring evolution
-
Greene,L.H. et al. (2007) The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res., 35, D291-D297.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Greene, L.H.1
-
8
-
-
66449084442
-
Infrastructure for the life sciences: Design and implementation of the UniProt website
-
Jain,E. et al. (2009) Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics, 10, 136.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 136
-
-
Jain, E.1
-
9
-
-
84868020188
-
On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions
-
Juritz,E. et al. (2012) On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions. BMC Genomics, 13 (Suppl. 4), S5.
-
(2012)
BMC Genomics
, vol.13
, Issue.SUPPL. 4
-
-
Juritz, E.1
-
10
-
-
84871839239
-
Protein conformational diversity modulates sequence divergence
-
Juritz,E. et al. (2013) Protein conformational diversity modulates sequence divergence. Mol. Biol. Evol., 30, 79-87.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 79-87
-
-
Juritz, E.1
-
11
-
-
78651327630
-
PCDB: A database of protein conformational diversity
-
Juritz,E.I. et al. (2011) PCDB: a database of protein conformational diversity. Nucleic Acids Res., 39, D475-D479.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Juritz, E.I.1
-
12
-
-
11444249446
-
Computational assignment of the EC numbers for genomicscale analysis of enzymatic reactions
-
Kotera,M. et al. (2004) Computational assignment of the EC numbers for genomicscale analysis of enzymatic reactions. J. Am. Chem. Soc., 126, 16487-16498.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 16487-16498
-
-
Kotera, M.1
-
13
-
-
0033970020
-
Folding and binding cascades: Dynamic landscapes and population shifts
-
Kumar,S. et al. (2000) Folding and binding cascades: dynamic landscapes and population shifts. Protein Sci., 9, 10-19.
-
(2000)
Protein Sci.
, vol.9
, pp. 10-19
-
-
Kumar, S.1
-
14
-
-
84879327937
-
Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale
-
Kuzu,G. et al. (2013) Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale. J. Proteome Res., 12, 2641-2653.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2641-2653
-
-
Kuzu, G.1
-
15
-
-
0000009443
-
Rapid comparison of protein structures
-
McLachlan,A.D. (1982) Rapid comparison of protein structures. Acta Crystallogr. A, 38, 871-873.
-
(1982)
Acta Crystallogr. A
, vol.38
, pp. 871-873
-
-
McLachlan, A.D.1
-
16
-
-
84856078561
-
Protein dynamics and conformational selection in bidirectional signal transduction
-
Nussinov,R. and Ma,B. (2012) Protein dynamics and conformational selection in bidirectional signal transduction. BMC Biol., 10, 2.
-
(2012)
BMC Biol.
, vol.10
, pp. 2
-
-
Nussinov, R.1
Ma, B.2
-
17
-
-
0036839162
-
MAMMOTH (matching molecular models obtained from theory): An automated method for model comparison
-
Ortiz,A.R. et al. (2002) MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci., 11, 2606-2621.
-
(2002)
Protein Sci.
, vol.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
-
18
-
-
84864000092
-
Generation of receptor structural ensembles for virtual screening using binding site shape analysis and clustering
-
Osguthorpe,D.J. et al. (2012) Generation of receptor structural ensembles for virtual screening using binding site shape analysis and clustering. Chem Biol Drug Des., 80, 182-193.
-
(2012)
Chem Biol Drug Des.
, vol.80
, pp. 182-193
-
-
Osguthorpe, D.J.1
-
19
-
-
84872145488
-
Molecular dynamics simulations provide atomistic insight into hydrogen exchange mass spectrometry experiments
-
Petruk,A.A. et al. (2013) Molecular dynamics simulations provide atomistic insight into hydrogen exchange mass spectrometry experiments. J. Chem. Theory Comput., 9, 658-669.
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 658-669
-
-
Petruk, A.A.1
-
20
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
Tsai,C.J. et al. (1999) Folding funnels, binding funnels, and protein function. Protein Sci., 8, 1181-1190.
-
(1999)
Protein Sci.
, vol.8
, pp. 1181-1190
-
-
Tsai, C.J.1
-
21
-
-
13444288174
-
E-MSD: An integrated data resource for bioinformatics
-
Velankar,S. et al. (2005) E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res., 33, D262-D265.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Velankar, S.1
-
22
-
-
10344232638
-
Scoring function for automated assessment of protein structure template quality
-
Zhang,Y. and Skolnick,J. (2004) Scoring function for automated assessment of protein structure template quality. Proteins, 57, 702-710.
-
(2004)
Proteins
, vol.57
, pp. 702-710
-
-
Zhang, Y.1
Skolnick, J.2
|