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Volumn 426, Issue 8, 2014, Pages 1692-1710

Determination of the self-association residues within a homomeric and a heteromeric AAA + enhancer binding protein

Author keywords

HrpR; HrpS; Pseudomonas syringae; PspF

Indexed keywords

ADENOSINE TRIPHOSPHATASE ASSOCIATED WITH VARIOUS CELLULAR ACTIVITIES ENHANCER BINDING PROTEIN; ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; BINDING PROTEIN; MUTANT PROTEIN; PROTEIN HRPR; PROTEIN HRPS; PROTEIN HRPV; UNCLASSIFIED DRUG;

EID: 84897116483     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2014.01.001     Document Type: Article
Times cited : (5)

References (44)
  • 1
    • 0348026706 scopus 로고
    • Probing the Escherichia coli glnALG upstream activation mechanism in vivo
    • S. Sasse-Dwight, and J.D. Gralla Probing the Escherichia coli glnALG upstream activation mechanism in vivo Proc Natl Acad Sci U S A 85 1988 8934 8938
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 8934-8938
    • Sasse-Dwight, S.1    Gralla, J.D.2
  • 3
    • 41749093397 scopus 로고    scopus 로고
    • Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor
    • S. Wigneshwereraj, D. Bose, P.C. Burrows, N. Joly, J. Schumacher, and M. Rappas et al. Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor Mol Microbiol 68 2008 538 546
    • (2008) Mol Microbiol , vol.68 , pp. 538-546
    • Wigneshwereraj, S.1    Bose, D.2    Burrows, P.C.3    Joly, N.4    Schumacher, J.5    Rappas, M.6
  • 4
    • 79551611518 scopus 로고    scopus 로고
    • Regulation of the co-evolved HrpR and HrpS AAA + proteins required for Pseudomonas syringae pathogenicity
    • M. Jovanovic, E.H. James, P.C. Burrows, F.G. Rego, M. Buck, and J. Schumacher Regulation of the co-evolved HrpR and HrpS AAA + proteins required for Pseudomonas syringae pathogenicity Nat Commun 2 2011 177
    • (2011) Nat Commun , vol.2 , pp. 177
    • Jovanovic, M.1    James, E.H.2    Burrows, P.C.3    Rego, F.G.4    Buck, M.5    Schumacher, J.6
  • 5
    • 84864911724 scopus 로고    scopus 로고
    • ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA + transcriptional activator
    • N. Joly, N. Zhang, and M. Buck ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA + transcriptional activator Mol Cell 47 2012 484 490
    • (2012) Mol Cell , vol.47 , pp. 484-490
    • Joly, N.1    Zhang, N.2    Buck, M.3
  • 11
    • 0028105752 scopus 로고
    • Identification of a putative alternate sigma factor and characterization of a multicomponent regulatory cascade controlling the expression of Pseudomonas syringae pv syringae Pss61 hrp and hrmA genes
    • Y. Xiao, S. Heu, J. Yi, Y. Lu, and S.W. Hutcheson Identification of a putative alternate sigma factor and characterization of a multicomponent regulatory cascade controlling the expression of Pseudomonas syringae pv. syringae Pss61 hrp and hrmA genes J Bacteriol 176 1994 1025 1036
    • (1994) J Bacteriol , vol.176 , pp. 1025-1036
    • Xiao, Y.1    Heu, S.2    Yi, J.3    Lu, Y.4    Hutcheson, S.W.5
  • 12
    • 0031783182 scopus 로고    scopus 로고
    • Negative regulation of hrp genes in Pseudomonas syringae by HrpV
    • G. Preston, W.L. Deng, H.C. Huang, and A. Collmer Negative regulation of hrp genes in Pseudomonas syringae by HrpV J Bacteriol 180 1998 4532 4537
    • (1998) J Bacteriol , vol.180 , pp. 4532-4537
    • Preston, G.1    Deng, W.L.2    Huang, H.C.3    Collmer, A.4
  • 13
    • 0033555834 scopus 로고    scopus 로고
    • In vivo and in vitro activities of the Escherichia coli sigma54 transcriptional activator, PspF, and its DNA-binding mutant PspFΔHTH
    • G. Jovanovic, L. Weiner, and P. Model in vivo and in vitro activities of the Escherichia coli sigma54 transcriptional activator, PspF, and its DNA-binding mutant PspFΔHTH J Mol Biol 285 1996 469 483
    • (1996) J Mol Biol , vol.285 , pp. 469-483
    • Jovanovic, G.1    Weiner, L.2    Model, P.3
  • 14
    • 0036293607 scopus 로고    scopus 로고
    • Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF
    • S. Elderkin, S. Jones, J. Schumacher, D. Studholme, and M. Buck Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF J Mol Biol 320 2002 23 37
    • (2002) J Mol Biol , vol.320 , pp. 23-37
    • Elderkin, S.1    Jones, S.2    Schumacher, J.3    Studholme, D.4    Buck, M.5
  • 15
    • 0027340543 scopus 로고
    • The sigma 54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
    • E. Morett, and L. Segovia The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains J Bacteriol 175 1993 6067 6074
    • (1993) J Bacteriol , vol.175 , pp. 6067-6074
    • Morett, E.1    Segovia, L.2
  • 16
    • 0031923677 scopus 로고    scopus 로고
    • In vivo studies on the positive control function of NifA: A conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation
    • V. Gonzales, L. Olvera, X. Soberon, and E. Morett in vivo studies on the positive control function of NifA: a conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation Mol Microbiol 28 1998 55 67
    • (1998) Mol Microbiol , vol.28 , pp. 55-67
    • Gonzales, V.1    Olvera, L.2    Soberon, X.3    Morett, E.4
  • 17
    • 0035449829 scopus 로고    scopus 로고
    • Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminium fluoride: Insights into activator mechanochemical action
    • M. Chaney, R. Grande, S.R. Wigneshweraraj, W. Cannon, P. Casaz, and M.T. Gallegos et al. Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminium fluoride: insights into activator mechanochemical action Genes Dev 15 2001 2282 2294
    • (2001) Genes Dev , vol.15 , pp. 2282-2294
    • Chaney, M.1    Grande, R.2    Wigneshweraraj, S.R.3    Cannon, W.4    Casaz, P.5    Gallegos, M.T.6
  • 19
    • 0037418230 scopus 로고    scopus 로고
    • The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: Identifying a surface that binds sigma 54
    • P. Bordes, S.R. Wigneshweraraj, J. Schumacher, X. Zhang, M. Chaney, and M. Buck The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54 Proc Natl Acad Sci U S A 100 2003 2278 2283
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 2278-2283
    • Bordes, P.1    Wigneshweraraj, S.R.2    Schumacher, J.3    Zhang, X.4    Chaney, M.5    Buck, M.6
  • 20
    • 6344272111 scopus 로고    scopus 로고
    • 54, promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation
    • 54, promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation Mol Microbiol 54 2004 489 506
    • (2004) Mol Microbiol , vol.54 , pp. 489-506
    • Bordes, P.1    Wigneshweraraj, S.R.2    Chaney, M.3    Dago, A.E.4    Morett, E.5    Buck, M.6
  • 21
    • 84855207431 scopus 로고    scopus 로고
    • Coupling AAA protein function to regulated gene expression
    • N. Joly, N. Zhang, M. Buck, and X. Zhang Coupling AAA protein function to regulated gene expression Biochim Biophys Acta 1823 2011 108 116
    • (2011) Biochim Biophys Acta , vol.1823 , pp. 108-116
    • Joly, N.1    Zhang, N.2    Buck, M.3    Zhang, X.4
  • 22
    • 0025361357 scopus 로고
    • A bacterial enhancer functions to tether a transcriptional activator near a promoter
    • A. Wedel, D.S. Weiss, D. Popham, P. Dröge, and S. Kustu A bacterial enhancer functions to tether a transcriptional activator near a promoter Science 27 1990 486 490
    • (1990) Science , vol.27 , pp. 486-490
    • Wedel, A.1    Weiss, D.S.2    Popham, D.3    Dröge, P.4    Kustu, S.5
  • 23
    • 0023665129 scopus 로고
    • Initiation of transcription at the bacterial glnAp2 promoter by purified E. Coli components is facilitated by enhancers
    • A.J. Ninfa, L.J. Reitzer, and B. Magasanik Initiation of transcription at the bacterial glnAp2 promoter by purified E. coli components is facilitated by enhancers Cell 50 1987 1039 1046
    • (1987) Cell , vol.50 , pp. 1039-1046
    • Ninfa, A.J.1    Reitzer, L.J.2    Magasanik, B.3
  • 24
    • 0030775809 scopus 로고    scopus 로고
    • Role of upstream activation sequences and integration host factor in transcriptional activation by the constitutively active prokaryotic enhancer-binding protein PspF
    • J. Dworkin, G. Jovanovic, and P. Model Role of upstream activation sequences and integration host factor in transcriptional activation by the constitutively active prokaryotic enhancer-binding protein PspF J Mol Biol 273 1997 377 388
    • (1997) J Mol Biol , vol.273 , pp. 377-388
    • Dworkin, J.1    Jovanovic, G.2    Model, P.3
  • 25
    • 0031582065 scopus 로고    scopus 로고
    • Mutant forms of the enhancer-binding protein NtrC can activate transcription from solution
    • A.K. North, and S. Kustu Mutant forms of the enhancer-binding protein NtrC can activate transcription from solution J Mol Biol 267 1997 17 36
    • (1997) J Mol Biol , vol.267 , pp. 17-36
    • North, A.K.1    Kustu, S.2
  • 26
    • 77955127606 scopus 로고    scopus 로고
    • Managing membrane stress: The phage shock protein (Psp) response, from molecular mechanisms to physiology
    • N. Jolly, C. Engl, G. Jovanovic, M. Huvet, T. Toni, and X. Sheng et al. Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology FEMS Microbiol Rev 34 2010 797 827
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 797-827
    • Jolly, N.1    Engl, C.2    Jovanovic, G.3    Huvet, M.4    Toni, T.5    Sheng, X.6
  • 27
    • 79953326554 scopus 로고    scopus 로고
    • Single chain forms of the enhancer binding protein PspF provide insights into geometric requirements for gene activation
    • N. Joly, and M. Buck Single chain forms of the enhancer binding protein PspF provide insights into geometric requirements for gene activation J Biol Chem 286 2011 12734 12742
    • (2011) J Biol Chem , vol.286 , pp. 12734-12742
    • Joly, N.1    Buck, M.2
  • 29
    • 84867508943 scopus 로고    scopus 로고
    • A common feature from different subunits of a homomeric AAA + protein contacts three spatially distinct transcription elements
    • N. Zhang, N. Joly, and M. Buck A common feature from different subunits of a homomeric AAA + protein contacts three spatially distinct transcription elements Nucleic Acids Res 40 2012 9139 9152
    • (2012) Nucleic Acids Res , vol.40 , pp. 9139-9152
    • Zhang, N.1    Joly, N.2    Buck, M.3
  • 30
    • 27944478488 scopus 로고    scopus 로고
    • The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins
    • S. Poggio, A. Osorio, G. Dreyfus, and L. Camarena The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins Mol Microbiol 58 2005 969 983
    • (2005) Mol Microbiol , vol.58 , pp. 969-983
    • Poggio, S.1    Osorio, A.2    Dreyfus, G.3    Camarena, L.4
  • 31
    • 0034836583 scopus 로고    scopus 로고
    • Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains
    • S.W. Hutcheson, J. Bretz, T. Sussan, S. Jin, and K. Pak Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains J Bacteriol 183 2001 5589 5598
    • (2001) J Bacteriol , vol.183 , pp. 5589-5598
    • Hutcheson, S.W.1    Bretz, J.2    Sussan, T.3    Jin, S.4    Pak, K.5
  • 33
    • 23044464806 scopus 로고    scopus 로고
    • Crystal structure of the central and C-terminal domain of the sigma(54)-activator ZraR
    • L. Salllai, and P.A. Tucker Crystal structure of the central and C-terminal domain of the sigma(54)-activator ZraR J Struct Biol 151 2005 160 170
    • (2005) J Struct Biol , vol.151 , pp. 160-170
    • Salllai, L.1    Tucker, P.A.2
  • 35
    • 0033083794 scopus 로고    scopus 로고
    • Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization
    • W. Cannon, M.T. Gallegos, P. Casaz, and M. Buck Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization Genes Dev 13 1999 357 370
    • (1999) Genes Dev , vol.13 , pp. 357-370
    • Cannon, W.1    Gallegos, M.T.2    Casaz, P.3    Buck, M.4
  • 36
    • 0035393302 scopus 로고    scopus 로고
    • Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
    • N.M. Luscombe, R.A. Laskowski, and J.M. Thornton Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level Nucleic Acids Res 29 2001 2860 2874
    • (2001) Nucleic Acids Res , vol.29 , pp. 2860-2874
    • Luscombe, N.M.1    Laskowski, R.A.2    Thornton, J.M.3
  • 37
    • 56949091704 scopus 로고    scopus 로고
    • Structure and regulatory mechanism of Aquifex aeolicus NtrC4: Variability and evolution in bacterial transcriptional regulation
    • J.D. Batchelor, M. Doucleff, C.J. Lee, K. Matsubara, S. De Carlo, and J. Heideker et al. Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation J Mol Biol 384 2008 1058 1075
    • (2008) J Mol Biol , vol.384 , pp. 1058-1075
    • Batchelor, J.D.1    Doucleff, M.2    Lee, C.J.3    Matsubara, K.4    De Carlo, S.5    Heideker, J.6
  • 38
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unified platform for automated protein structure and function prediction
    • A. Roy, A. Kucukural, and Y. Zhang I-TASSER: a unified platform for automated protein structure and function prediction Nat Protoc 5 2010 725 738
    • (2010) Nat Protoc , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 39
    • 0034885052 scopus 로고    scopus 로고
    • AAA + superfamily ATPases: Common structure-diverse function
    • T. Ogura, and A.J. Wilkinson AAA + superfamily ATPases: common structure-diverse function Genes Cells 6 2001 575 597
    • (2001) Genes Cells , vol.6 , pp. 575-597
    • Ogura, T.1    Wilkinson, A.J.2
  • 40
    • 2142707172 scopus 로고    scopus 로고
    • ATP-dependent transcriptional activation by bacterial PspF AAA + protein
    • J. Schumacher, X. Zhang, S. Jones, P. Bordes, and M. Buck ATP-dependent transcriptional activation by bacterial PspF AAA + protein J Mol Biol 338 2004 863 875
    • (2004) J Mol Biol , vol.338 , pp. 863-875
    • Schumacher, J.1    Zhang, X.2    Jones, S.3    Bordes, P.4    Buck, M.5
  • 41
    • 35448968986 scopus 로고    scopus 로고
    • Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein
    • N. Joly, M. Rappas, S.R. Wigneshweraraj, X. Zhang, and M. Buck Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein Mol Microbiol 66 3 2007 583 595
    • (2007) Mol Microbiol , vol.66 , Issue.3 , pp. 583-595
    • Joly, N.1    Rappas, M.2    Wigneshweraraj, S.R.3    Zhang, X.4    Buck, M.5
  • 42
  • 43
    • 80055035853 scopus 로고    scopus 로고
    • Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
    • B. Wang, R. Kitney, N. Joly, and M. Buck Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology Nat Commun 2 2011 508
    • (2011) Nat Commun , vol.2 , pp. 508
    • Wang, B.1    Kitney, R.2    Joly, N.3    Buck, M.4
  • 44
    • 0023809599 scopus 로고
    • +-ATPase activity
    • +-ATPase activity Methods Enzymol 150 1988 116 119
    • (1988) Methods Enzymol , vol.150 , pp. 116-119
    • Norby, J.G.1


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