-
1
-
-
0348026706
-
Probing the Escherichia coli glnALG upstream activation mechanism in vivo
-
S. Sasse-Dwight, and J.D. Gralla Probing the Escherichia coli glnALG upstream activation mechanism in vivo Proc Natl Acad Sci U S A 85 1988 8934 8938
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 8934-8938
-
-
Sasse-Dwight, S.1
Gralla, J.D.2
-
3
-
-
41749093397
-
Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor
-
S. Wigneshwereraj, D. Bose, P.C. Burrows, N. Joly, J. Schumacher, and M. Rappas et al. Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor Mol Microbiol 68 2008 538 546
-
(2008)
Mol Microbiol
, vol.68
, pp. 538-546
-
-
Wigneshwereraj, S.1
Bose, D.2
Burrows, P.C.3
Joly, N.4
Schumacher, J.5
Rappas, M.6
-
4
-
-
79551611518
-
Regulation of the co-evolved HrpR and HrpS AAA + proteins required for Pseudomonas syringae pathogenicity
-
M. Jovanovic, E.H. James, P.C. Burrows, F.G. Rego, M. Buck, and J. Schumacher Regulation of the co-evolved HrpR and HrpS AAA + proteins required for Pseudomonas syringae pathogenicity Nat Commun 2 2011 177
-
(2011)
Nat Commun
, vol.2
, pp. 177
-
-
Jovanovic, M.1
James, E.H.2
Burrows, P.C.3
Rego, F.G.4
Buck, M.5
Schumacher, J.6
-
5
-
-
84864911724
-
ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA + transcriptional activator
-
N. Joly, N. Zhang, and M. Buck ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA + transcriptional activator Mol Cell 47 2012 484 490
-
(2012)
Mol Cell
, vol.47
, pp. 484-490
-
-
Joly, N.1
Zhang, N.2
Buck, M.3
-
8
-
-
20144366027
-
Structural insights into the activity of enhancer-binding proteins
-
M. Rapas, J. Schumacher, F. Beuron, H. Niwa, P. Bordes, and S. Wigneshweraraj et al. Structural insights into the activity of enhancer-binding proteins Science 307 2005 1972 1975
-
(2005)
Science
, vol.307
, pp. 1972-1975
-
-
Rapas, M.1
Schumacher, J.2
Beuron, F.3
Niwa, H.4
Bordes, P.5
Wigneshweraraj, S.6
-
11
-
-
0028105752
-
Identification of a putative alternate sigma factor and characterization of a multicomponent regulatory cascade controlling the expression of Pseudomonas syringae pv syringae Pss61 hrp and hrmA genes
-
Y. Xiao, S. Heu, J. Yi, Y. Lu, and S.W. Hutcheson Identification of a putative alternate sigma factor and characterization of a multicomponent regulatory cascade controlling the expression of Pseudomonas syringae pv. syringae Pss61 hrp and hrmA genes J Bacteriol 176 1994 1025 1036
-
(1994)
J Bacteriol
, vol.176
, pp. 1025-1036
-
-
Xiao, Y.1
Heu, S.2
Yi, J.3
Lu, Y.4
Hutcheson, S.W.5
-
12
-
-
0031783182
-
Negative regulation of hrp genes in Pseudomonas syringae by HrpV
-
G. Preston, W.L. Deng, H.C. Huang, and A. Collmer Negative regulation of hrp genes in Pseudomonas syringae by HrpV J Bacteriol 180 1998 4532 4537
-
(1998)
J Bacteriol
, vol.180
, pp. 4532-4537
-
-
Preston, G.1
Deng, W.L.2
Huang, H.C.3
Collmer, A.4
-
13
-
-
0033555834
-
In vivo and in vitro activities of the Escherichia coli sigma54 transcriptional activator, PspF, and its DNA-binding mutant PspFΔHTH
-
G. Jovanovic, L. Weiner, and P. Model in vivo and in vitro activities of the Escherichia coli sigma54 transcriptional activator, PspF, and its DNA-binding mutant PspFΔHTH J Mol Biol 285 1996 469 483
-
(1996)
J Mol Biol
, vol.285
, pp. 469-483
-
-
Jovanovic, G.1
Weiner, L.2
Model, P.3
-
14
-
-
0036293607
-
Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF
-
S. Elderkin, S. Jones, J. Schumacher, D. Studholme, and M. Buck Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF J Mol Biol 320 2002 23 37
-
(2002)
J Mol Biol
, vol.320
, pp. 23-37
-
-
Elderkin, S.1
Jones, S.2
Schumacher, J.3
Studholme, D.4
Buck, M.5
-
15
-
-
0027340543
-
The sigma 54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
-
E. Morett, and L. Segovia The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains J Bacteriol 175 1993 6067 6074
-
(1993)
J Bacteriol
, vol.175
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
16
-
-
0031923677
-
In vivo studies on the positive control function of NifA: A conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation
-
V. Gonzales, L. Olvera, X. Soberon, and E. Morett in vivo studies on the positive control function of NifA: a conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation Mol Microbiol 28 1998 55 67
-
(1998)
Mol Microbiol
, vol.28
, pp. 55-67
-
-
Gonzales, V.1
Olvera, L.2
Soberon, X.3
Morett, E.4
-
17
-
-
0035449829
-
Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminium fluoride: Insights into activator mechanochemical action
-
M. Chaney, R. Grande, S.R. Wigneshweraraj, W. Cannon, P. Casaz, and M.T. Gallegos et al. Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminium fluoride: insights into activator mechanochemical action Genes Dev 15 2001 2282 2294
-
(2001)
Genes Dev
, vol.15
, pp. 2282-2294
-
-
Chaney, M.1
Grande, R.2
Wigneshweraraj, S.R.3
Cannon, W.4
Casaz, P.5
Gallegos, M.T.6
-
18
-
-
0036039734
-
Mechanochemical ATPases and transcriptional activation
-
X. Zhang, M. Chaney, S.R. Wigneshweraraj, J. Schumacher, P. Bordes, and W. Cannon et al. Mechanochemical ATPases and transcriptional activation Mol Microbiol 45 2002 895 903
-
(2002)
Mol Microbiol
, vol.45
, pp. 895-903
-
-
Zhang, X.1
Chaney, M.2
Wigneshweraraj, S.R.3
Schumacher, J.4
Bordes, P.5
Cannon, W.6
-
19
-
-
0037418230
-
The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: Identifying a surface that binds sigma 54
-
P. Bordes, S.R. Wigneshweraraj, J. Schumacher, X. Zhang, M. Chaney, and M. Buck The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54 Proc Natl Acad Sci U S A 100 2003 2278 2283
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 2278-2283
-
-
Bordes, P.1
Wigneshweraraj, S.R.2
Schumacher, J.3
Zhang, X.4
Chaney, M.5
Buck, M.6
-
20
-
-
6344272111
-
54, promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation
-
54, promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation Mol Microbiol 54 2004 489 506
-
(2004)
Mol Microbiol
, vol.54
, pp. 489-506
-
-
Bordes, P.1
Wigneshweraraj, S.R.2
Chaney, M.3
Dago, A.E.4
Morett, E.5
Buck, M.6
-
21
-
-
84855207431
-
Coupling AAA protein function to regulated gene expression
-
N. Joly, N. Zhang, M. Buck, and X. Zhang Coupling AAA protein function to regulated gene expression Biochim Biophys Acta 1823 2011 108 116
-
(2011)
Biochim Biophys Acta
, vol.1823
, pp. 108-116
-
-
Joly, N.1
Zhang, N.2
Buck, M.3
Zhang, X.4
-
22
-
-
0025361357
-
A bacterial enhancer functions to tether a transcriptional activator near a promoter
-
A. Wedel, D.S. Weiss, D. Popham, P. Dröge, and S. Kustu A bacterial enhancer functions to tether a transcriptional activator near a promoter Science 27 1990 486 490
-
(1990)
Science
, vol.27
, pp. 486-490
-
-
Wedel, A.1
Weiss, D.S.2
Popham, D.3
Dröge, P.4
Kustu, S.5
-
23
-
-
0023665129
-
Initiation of transcription at the bacterial glnAp2 promoter by purified E. Coli components is facilitated by enhancers
-
A.J. Ninfa, L.J. Reitzer, and B. Magasanik Initiation of transcription at the bacterial glnAp2 promoter by purified E. coli components is facilitated by enhancers Cell 50 1987 1039 1046
-
(1987)
Cell
, vol.50
, pp. 1039-1046
-
-
Ninfa, A.J.1
Reitzer, L.J.2
Magasanik, B.3
-
24
-
-
0030775809
-
Role of upstream activation sequences and integration host factor in transcriptional activation by the constitutively active prokaryotic enhancer-binding protein PspF
-
J. Dworkin, G. Jovanovic, and P. Model Role of upstream activation sequences and integration host factor in transcriptional activation by the constitutively active prokaryotic enhancer-binding protein PspF J Mol Biol 273 1997 377 388
-
(1997)
J Mol Biol
, vol.273
, pp. 377-388
-
-
Dworkin, J.1
Jovanovic, G.2
Model, P.3
-
25
-
-
0031582065
-
Mutant forms of the enhancer-binding protein NtrC can activate transcription from solution
-
A.K. North, and S. Kustu Mutant forms of the enhancer-binding protein NtrC can activate transcription from solution J Mol Biol 267 1997 17 36
-
(1997)
J Mol Biol
, vol.267
, pp. 17-36
-
-
North, A.K.1
Kustu, S.2
-
26
-
-
77955127606
-
Managing membrane stress: The phage shock protein (Psp) response, from molecular mechanisms to physiology
-
N. Jolly, C. Engl, G. Jovanovic, M. Huvet, T. Toni, and X. Sheng et al. Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology FEMS Microbiol Rev 34 2010 797 827
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 797-827
-
-
Jolly, N.1
Engl, C.2
Jovanovic, G.3
Huvet, M.4
Toni, T.5
Sheng, X.6
-
27
-
-
79953326554
-
Single chain forms of the enhancer binding protein PspF provide insights into geometric requirements for gene activation
-
N. Joly, and M. Buck Single chain forms of the enhancer binding protein PspF provide insights into geometric requirements for gene activation J Biol Chem 286 2011 12734 12742
-
(2011)
J Biol Chem
, vol.286
, pp. 12734-12742
-
-
Joly, N.1
Buck, M.2
-
28
-
-
55249113939
-
Organization of an activator-bound RNA polymerase holoenzyme
-
D. Bose, T. Pape, P.C. Burrows, M. Rappas, S.R. Wigneshweraraj, and M. Buck et al. Organization of an activator-bound RNA polymerase holoenzyme Mol Cell 32 2008 337 346
-
(2008)
Mol Cell
, vol.32
, pp. 337-346
-
-
Bose, D.1
Pape, T.2
Burrows, P.C.3
Rappas, M.4
Wigneshweraraj, S.R.5
Buck, M.6
-
29
-
-
84867508943
-
A common feature from different subunits of a homomeric AAA + protein contacts three spatially distinct transcription elements
-
N. Zhang, N. Joly, and M. Buck A common feature from different subunits of a homomeric AAA + protein contacts three spatially distinct transcription elements Nucleic Acids Res 40 2012 9139 9152
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9139-9152
-
-
Zhang, N.1
Joly, N.2
Buck, M.3
-
30
-
-
27944478488
-
The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins
-
S. Poggio, A. Osorio, G. Dreyfus, and L. Camarena The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins Mol Microbiol 58 2005 969 983
-
(2005)
Mol Microbiol
, vol.58
, pp. 969-983
-
-
Poggio, S.1
Osorio, A.2
Dreyfus, G.3
Camarena, L.4
-
31
-
-
0034836583
-
Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains
-
S.W. Hutcheson, J. Bretz, T. Sussan, S. Jin, and K. Pak Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains J Bacteriol 183 2001 5589 5598
-
(2001)
J Bacteriol
, vol.183
, pp. 5589-5598
-
-
Hutcheson, S.W.1
Bretz, J.2
Sussan, T.3
Jin, S.4
Pak, K.5
-
32
-
-
77950578326
-
Positive regulation of the Hrp type III secretion system in Pseudomonas syringae pv phaseolicola
-
I. Ortiz-Martin, R. Thwaites, A.P. Macho, J.W. Mansfield, and C.R. Beuzon Positive regulation of the Hrp type III secretion system in Pseudomonas syringae pv phaseolicola Mol Plant Microbe Interact 23 2010 665 681
-
(2010)
Mol Plant Microbe Interact
, vol.23
, pp. 665-681
-
-
Ortiz-Martin, I.1
Thwaites, R.2
Macho, A.P.3
Mansfield, J.W.4
Beuzon, C.R.5
-
33
-
-
23044464806
-
Crystal structure of the central and C-terminal domain of the sigma(54)-activator ZraR
-
L. Salllai, and P.A. Tucker Crystal structure of the central and C-terminal domain of the sigma(54)-activator ZraR J Struct Biol 151 2005 160 170
-
(2005)
J Struct Biol
, vol.151
, pp. 160-170
-
-
Salllai, L.1
Tucker, P.A.2
-
35
-
-
0033083794
-
Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization
-
W. Cannon, M.T. Gallegos, P. Casaz, and M. Buck Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization Genes Dev 13 1999 357 370
-
(1999)
Genes Dev
, vol.13
, pp. 357-370
-
-
Cannon, W.1
Gallegos, M.T.2
Casaz, P.3
Buck, M.4
-
36
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
N.M. Luscombe, R.A. Laskowski, and J.M. Thornton Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level Nucleic Acids Res 29 2001 2860 2874
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
37
-
-
56949091704
-
Structure and regulatory mechanism of Aquifex aeolicus NtrC4: Variability and evolution in bacterial transcriptional regulation
-
J.D. Batchelor, M. Doucleff, C.J. Lee, K. Matsubara, S. De Carlo, and J. Heideker et al. Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation J Mol Biol 384 2008 1058 1075
-
(2008)
J Mol Biol
, vol.384
, pp. 1058-1075
-
-
Batchelor, J.D.1
Doucleff, M.2
Lee, C.J.3
Matsubara, K.4
De Carlo, S.5
Heideker, J.6
-
38
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
A. Roy, A. Kucukural, and Y. Zhang I-TASSER: a unified platform for automated protein structure and function prediction Nat Protoc 5 2010 725 738
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
39
-
-
0034885052
-
AAA + superfamily ATPases: Common structure-diverse function
-
T. Ogura, and A.J. Wilkinson AAA + superfamily ATPases: common structure-diverse function Genes Cells 6 2001 575 597
-
(2001)
Genes Cells
, vol.6
, pp. 575-597
-
-
Ogura, T.1
Wilkinson, A.J.2
-
40
-
-
2142707172
-
ATP-dependent transcriptional activation by bacterial PspF AAA + protein
-
J. Schumacher, X. Zhang, S. Jones, P. Bordes, and M. Buck ATP-dependent transcriptional activation by bacterial PspF AAA + protein J Mol Biol 338 2004 863 875
-
(2004)
J Mol Biol
, vol.338
, pp. 863-875
-
-
Schumacher, J.1
Zhang, X.2
Jones, S.3
Bordes, P.4
Buck, M.5
-
41
-
-
35448968986
-
Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein
-
N. Joly, M. Rappas, S.R. Wigneshweraraj, X. Zhang, and M. Buck Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein Mol Microbiol 66 3 2007 583 595
-
(2007)
Mol Microbiol
, vol.66
, Issue.3
, pp. 583-595
-
-
Joly, N.1
Rappas, M.2
Wigneshweraraj, S.R.3
Zhang, X.4
Buck, M.5
-
42
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press Cold Spring Harbor
-
J. Miller Experiments in molecular genetics 1971 Cold Spring Harbor Laboratory Press Cold Spring Harbor
-
(1971)
Experiments in Molecular Genetics
-
-
Miller, J.1
-
43
-
-
80055035853
-
Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
-
B. Wang, R. Kitney, N. Joly, and M. Buck Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology Nat Commun 2 2011 508
-
(2011)
Nat Commun
, vol.2
, pp. 508
-
-
Wang, B.1
Kitney, R.2
Joly, N.3
Buck, M.4
-
44
-
-
0023809599
-
+-ATPase activity
-
+-ATPase activity Methods Enzymol 150 1988 116 119
-
(1988)
Methods Enzymol
, vol.150
, pp. 116-119
-
-
Norby, J.G.1
|