Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance

Molecular Ecology

Volumn 23, Issue 7, 2014, Pages 1701-1716

  Martin, Michael D ^a,b,c   Zimmer, Elizabeth A ^b   Olsen, Morten T ^a   Foote, Andrew D ^a   Gilbert, M Thomas P ^a   Brush, Grace S ^c  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b DEPARTMENT OF PALEOBIOLOGY   (United States)

^c Johns Hopkins University   (United States)

Author keywords

contemporary evolution; hybridization; invasive species; landscape genetics; phylogeography; population genetics empirical

Indexed keywords

AMBROSIA; AMBROSIA ARTEMISIIFOLIA;

CHLOROPLAST DNA; MICROSATELLITE DNA; PLANT DNA; RIBOSOMAL SPACER DNA;

AGRICULTURE; ARTICLE; BAYES THEOREM; CLUSTER ANALYSIS; CONTEMPORARY EVOLUTION; DNA SEQUENCE; EUROPE; GENETICS; HYBRIDIZATION; INTRODUCED SPECIES; INVASIVE SPECIES; LANDSCAPE GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; POPULATION GENETICS-EMPIRICAL; RAGWEED; SPATIOTEMPORAL ANALYSIS;

CONTEMPORARY EVOLUTION; HYBRIDIZATION; INVASIVE SPECIES; LANDSCAPE GENETICS; PHYLOGEOGRAPHY; POPULATION GENETICS-EMPIRICAL;

AGRICULTURE; AMBROSIA; BAYES THEOREM; CLUSTER ANALYSIS; DNA, CHLOROPLAST; DNA, PLANT; DNA, RIBOSOMAL SPACER; EUROPE; EVOLUTION, MOLECULAR; INTRODUCED SPECIES; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS, DNA; SPATIO-TEMPORAL ANALYSIS;

EID: 84897114254     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12675     Document Type: Article

References (99)

1. Abbott RJ, (1992) Plant invasions, interspecific hybridization and the evolution of new plant taxa. Trends in Ecology & Evolution, 7, 401-405.
2. Alberto FJ, Derory J, Boury C, Frigerio J-M, Zimmermann NE, Kremer A,. (2013) Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea. Genetics, 195, 495-512.
3. Bagarozzi DA Jr, Travis J, (1998) Ragweed pollen proteolytic enzymes: possible roles in allergies in asthma. Phytochemistry, 47, 593-598.
4. Baker HG, (1974) The evolution of weeds. Annual Review of Ecology and Systematics, 5, 1-24.
5. Bass DJ, Delpech V, Beard J, Bass P, Walls RS, (2000) Late summer and fall (March-May) pollen allergy and respiratory disease in Northern New South Wales, Australia. Annals of Allergy, Asthma, and Immunology, 85, 374-381.
6. Bassett IJ, Crompton CW, (1975) The biology of Canadian weeds. 11. Ambrosia artemisiifolia L. and A. psilostachya DC. Canadian Journal of Plant Science, 55, 463-476.
7. Bohren C, Mermillod G, Delabays N, (2006) Common ragweed (Ambrosia artemisiifolia L.) in Switzerland: development of a nationwide concerted action. Journal of Plant Diseases and Protection, 21, 497-503.
8. Bossdorf O, Auge H, Lafuma L, et al,. (2005) Phenotypic and genetic differentiation between native and introduced plant populations. Oecologia, 144, 1-11.
9. Brush GS, (2009) Historical land use, nitrogen, and coastal eutrophication: a paleoecological perspective. Estuaries and Coasts, 32, 18-28.
10. 2LEN study suggests increasing prevalence. Allergy, 64, 657-665.
11. Buswell JM, Moles AT, Hartley S, (2011) Is rapid evolution common in introduced plant species? Journal of Ecology, 99, 214-224.
12. Cavalli-Sforza LL, Edwards AWF, (1967) Phylogenetic analysis. Models and estimation procedures. American Journal of Human Genetics, 19, 233-257.
13. Chauvel B, Dessaint F, Cardinal-Legrand C, Bretagnolle F, (2006) The historic spread of Ambrosia artemisiifolia L. in France from herbarium records. Journal of Biogeography, 33, 665-673.
14. Chun YJ, Fumanal B, Laitung B, Bretagnolle F, (2010) Gene flow and population admixture as the primary post-invasion processes in common ragweed (Ambrosia artemisiifolia) populations in France. New Phytologist, 185, 1100-1107.
15. Chun YJ, Le Corre V, Bretagnolle F, (2011) Adaptive divergence for a fitness-related trait among invasive Ambrosia artemisiifolia populations in France. Molecular Ecology, 20, 1378-1388.
16. Colautti RI, Ricciardi A, Grigorovich IA, MacIsaac HJ, (2006) Is invasion success explained by the enemy release hypothesis? Ecology Letters, 7, 721-733.
17. Comtois P, Gagnon L, (1988) Pollen concentration and frequency of pollinosis symptoms: a method of determination of the clinical threshold. Revue Francaise de Allergologie et de Immunologie Clinique, 28, 279-286.
18. Csontos P, Vitalos M, Barina Z, Kiss L, (2010) Early distribution and spread of Ambrosia artemisiifolia in Central and Eastern Europe. Botanica Helvetica, 120, 75-78.
19. Davidson AM, Jennions M, Nicotra AB, (2011) Do invasive species show higher phenotypic plasticity than native species and, if so, is it adaptive? A meta-analysis. Ecology Letters, 14, 419-431.
20. Davis MD, Brubaker LB, Beiswenger JM, (1971) Pollen grains in lake sediments: pollen percentages in surface sediments from southern Michigan. Quaternary Research, 1, 450-467.
21. Dempster AP, Laird NM, Rubin DB, (1977) Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society Series B, 39, 1-38.
22. DeWoody JA, Schupp J, Kenefic L, et al,. (2004) Universal method for producing ROX-labeled size standards suitable for automated genotyping. BioTechniques, 37, 348-352.
23. Dextrase AJ, Mandrak NE, (2006) Impacts of alien invasive species on freshwater fauna at risk in Canada. Biological Invasions, 8, 13-24.
24. Dlugosch KM, Parker IM, (2008a) Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Molecular Ecology, 17, 431-449.
25. Dlugosch KM, Parker IM, (2008b) Invading populations of an ornamental shrub show rapid life history evolution despite genetic bottlenecks. Ecological Letters, 11, 701-709.
26. Drummond MA, Loveland TR, (2010) Land-use pressure and a transition to forest-cover loss in the eastern United States. BioScience, 60, 286-298.
27. Durand E, Jay F, Gaggiotti OE, François O, (2009) Spatial inference of admixture proportions and secondary contact zones. Molecular Biology and Evolution, 26, 1963-1973.
28. Earl DA, vonHoldt BM, (2012) STRUCTURE HARVESTER: a website and program for visualizing the STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources, 4, 359-361.
29. Ellstrand NC, (2009) Evolution of invasiveness in plants following hybridization. Biological Invasions, 11, 1089-1091.
30. Ellstrand NC, Schierenbeck KA, (2000) Hybridization as a stimulus for the evolution of invasiveness in plants? Proceedings of the National Academy of Sciences, USA, 97, 7043-7050.
31. Encyclopedia of Life (2011) Available from: http://www.eol.org. Accessed 02/14/2011.
32. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611-2620.
33. Excoffier L, (2004) Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons learned from the infinite-island model. Molecular Ecology, 13, 853-864.
34. Foley JA, DeFries R, Asner GP, et al,. (2005) Global consequences of land use. Science, 309, 570-574.
35. François O, Durand E, (2010) Spatially explicit Bayesian clustering models in population genetics. Molecular Ecology Resources, 10, 773-784.
36. Friedman J, Barrett SCH, (2008) High outcrossing in the annual colonizing species Ambrosia artemisiifolia (Asteraceae). Annals of Botany, 101, 1303-1309.
37. Fumanal B, Chauvel B, Sabatier A, Bretagnolle F, (2007) Variability and cryptic heteromorphism of Ambrosia artemisiifolia seeds: what consequences for its invasion in France? Annals of Botany, 100, 305-313.
38. Gaudeul M, Giraud T, Kiss L, Shykoff JA, (2011) Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia. PLoS ONE, 6, e17658. doi: 10.1371/journal.pone.0017658
39. Genton BJ, Shykoff A, Giraud T, (2005) High genetic diversity in French invasive populations of common ragweed, Ambrosia artemisiifolia, as a result of multiple sources of introduction. Molecular Ecology, 14, 4275-4285.
40. Gladieux P, Giraud T, Kiss L, et al,. (2010) Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe. Biological Invasions, 13, 933-944.
41. Goudet J, (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
42. Grimm EC, (2001) Trends and palaeoecological problems in the vegetation and climate history of the Northern Great Plains, USA. Biology and Environment: Proceedings of the Royal Irish Academy, 101B, 47-64.
43. Guillot G, Mortier F, Estoup A, (2005) Geneland: a program for landscape genetics. Molecular Ecology Notes, 5, 712-715.
44. Guillot G, Leblois R, Coulon A, Frantz AC, (2009) Statistical methods in spatial genetics. Molecular Ecology, 18, 4734-4756.
45. Hejda M, Pyšek P, Jarošík V, (2009) Impact of invasive plants on the species richness, diversity and composition of invaded communities. Journal of Ecology, 97, 393-403.
46. Hodgins KA, Rieseberg LH, (2011) Genetic differentiation in life-history traits of introduced and native common ragweed (Ambrosia artemisiifolia) populations. Journal of Evolutionary Biology, 24, 2731-2749.
47. Hodgins KA, Lai Z, Nurkowski K, Huang J, Rieseberg LH, (2013) The molecular basis of invasiveness: differences in gene expression of native and introduced common ragweed (Ambrosia artemisiifolia) in stressful and benign environments. Molecular Ecology, 22, 2496-2510.
48. Hoyt CA, (2000) Pollen signatures of the arid to humid grasslands of North America. Journal of Biogeography, 27, 687-696.
49. Hubisz MJ, Falush D, Stephens M, Pritchard JK, (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources, 9, 1322-1332.
50. Jakobsson M, Rosenberg NA, (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801-1806.
51. Joly M, Bertrand P, Gbangou RY, Dubé MWJ, Lavoie C, (2011) Paving the way for invasive species: road type and the spread of common ragweed (Ambrosia artemisiifolia). Environmental Management, 48, 514-522.
52. Jombart T, (2008) Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403-1405.
53. Jones KL, (1936) Studies on Ambrosia I. The inheritance of floral types in the ragweed, Ambrosia eliator L. American Midland Naturalist, 17, 673-699.
54. Keane RM, Crawley MJ, (2002) Exotic plant invasions and the enemy release hypothesis. Trends in Ecology and Evolution, 17, 164-170.
55. Keller SR, Taylor DR, (2008) History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection. Ecology Letters, 11, 852-866.
56. Kiss L, Béres I, (2006) Anthropogenic factors behind the recent population expansion of common ragweed (Ambrosia artemisiifolia L.) in Eastern Europe: is there a correlation with political transitions? Journal of Biogeography, 33, 2154-2157.
57. Langella O, (1999) Populations 1.2.30. Available at: http:// bioninformatics.org/~tryphon/populations.
58. Lavoie C, Jodoin Y, de Merlis AG, (2007) How did common ragweed (Ambrosia artemisiifolia L.) spread in Québec? A historical analysis using herbarium records. Journal of Biogeography, 34, 1751-1761.
59. Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
60. Lockwood JL, Cassey P, Blackburn T, (2005) The role of propagule pressure in explaining species invasions. Trends in Ecology & Evolution, 20, 223-228.
61. Mack RN, Simberloff D, Lonsdale WM, et al,. (2000) Biotic invasions: causes, epidemiology, global consequences and control. Ecological Applications, 10, 689-710.
62. Maron JL, Vila M, Bommarco R, Elmendorf S, Beardsley P, (2004) Rapid evolution of an invasive plant. Ecological Monographs, 74, 261-280.
63. Martin MD, (2011) Evolutionary Mechanisms of Ambrosia artemisiifolia invasion. PhD Thesis, Johns Hopkins University.
64. Martin MD, Chamecki M, Brush GS, Meneveau C, Parlange MB, (2009) Pollen clumping and wind dispersal in an invasive angiosperm. American Journal of Botany, 96, 1703-1711.
65. Mila B, Girman DJ, Kimura M, Smith TB, (2000) Genetic evidence for the effect of a postglacial population expansion on the phylogeography of a North American songbird. Proceedings of the Royal Society of London B, 267, 1033-1040.
66. Myers JH, Bazely DR, (2003) Ecology and Control of Introduced Plants. Cambridge University Press, Cambridge.
67. Nei M, (1987) Molecular Evolutionary Genetics. Columbia University Press, New York, New York.
68. Ostroumov AI, (1971) Hypersensitivity caused by Ambrosia pollen in the Kuban area (Krasnodar Region). Allergie und Immunologie (Leipz), 17, 202-207.
69. Payne WW, (1976) Biochemistry and species problems in Ambrosia (Asteraceae-Ambrosieae). Plant Systematics and Evolution, 125, 169-178.
70. Pimentel D, McNair S, Janecka J, et al,. (2001) Economic and environmental threats of alien plant, animal and microbe invasions. Agriculture, Ecosystems and Environment, 84, 1-20.
71. Prentis PJ, Wilson JRU, Dormontt EE, Richardson DM, Lowe AJ, (2008) Adaptive evolution in invasive species. Trends in Plant Science, 13, 288-294.
72. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
73. Pritchard JK, Wen X, Falush D, (2010) Documentation for STRUCTURE software: Version 2.3. Available from http://pritch.bsd.uchicago.edu.
74. Prost S, Anderson CNK, (2011) TempNet: a method to display statistical parsimony networks for heterochronous DNA sequence data. Methods in Ecology and Evolution, 2, 663-667.
75. Ramankutty N, Heller E, Rhemtulla J, (2010) Prevailing myths about agricultural abandonment and forest regrowth in the United States. Annals of the Association of American Geographers, 100, 502-512.
76. Raymond M, Rousset F, (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
77. Richards CL, Bossdorf O, Muth NZ, Gurevitch J, Pigliucci M, (2006) Jack of all trades, master of some? On the role of phenotypic plasticity in plant invasions. Ecology Letters, 9, 981-993.
78. Rosenberg NA, (2004) Distruct: a program for the graphical display of population structure. Molecular Ecology Notes, 4, 128-137.
79. Rousset F, (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
80. Saar M, Gudžinskas Z, Ploompuu T, et al,. (2000) Ragweed plants and airborne pollen in the Baltic States. Aerobiologia, 16, 101-106.
81. Sakai AK, Allendorf FW, Holt JS, et al,. (2001) The population biology of invasive species. Annual Review of Ecology, Evolution and Systematics, 32, 305-332.
82. Saltonstall K, (2002) Cryptic invasion by a non-native genotype of the common reed, Phragmites australis, into North America. Proceedings of the National Academy of Sciences, USA, 99, 2445-2449.
83. Sax DF, Stachowicz JJ, Brown JH, et al,. (2007) Ecological and evolutionary insights from species invasions. Trends in Ecology and Evolution, 22, 465-471.
84. Shaw J, Lickey EB, Beck JT, et al,. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany, 92, 142-166.
85. Simberloff D, (2005) Non-native species do threaten the natural environment!. Journal of Agricultural and Environmental Ethics, 18, 595-607.
86. 2 concentration. Functional Plant Biology, 32, 667-670.
87. Slatkin M, Hudson RR, (1991) Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555-562.
88. Smith WB, Miles PD, Vissage JS, Pugh SA, (2005) Forest Resources of the United States, 2002. US Department of Agriculture Forest Service, North Central Research Station. General Technical Report NC-241.
89. Sugaya A, Tsuda T, Ohguchi H, (1997) Marked increase of atmospheric pollen dispersion of ragweed (Ambrosia spp.): annual changes in atmospheric pollen counts of major allergen plants in autumn in Saitama Prefecture. Arerugi, 46, 585-593.
90. Thébaud C, Simberloff D, (2001) Are plants really larger in their introduced ranges? American Naturalist, 157, 231-236.
91. Van Kleunen M, Dawson W, Schlaepfer D, Jeschke JM, Fischer M, (2010) Are invaders different? A conceptual framework of comparative approaches for assessing determinants of invasiveness. Ecology Letters, 13, 947-958.
92. Vasemägi A, (2006) The adaptive hypothesis of clinal variation revisited: single-locus clines as a result of spatially restricted gene flow. Genetics, 173, 2411-2414.
93. Voller E, Auge H, Bossdorf O, Prati D, (2013) Land use causes genetic differentiation of life-history traits in Bromus hordeaceus. Global Change Biology, 19, 892-899.
94. Waisel Y, Eshel A, Keynan N, Langgut D, (2008) Ambrosia: a new impending disaster for the Israeli allergic population. Israel Medical Association Journal, 10, 856-857.
95. Wang SY, Spongberg SA, Rubenstein JS, (1985) Ragweed in China. Nature, 316, 386.
96. Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
97. Williams M, (1989) Americans and Their Forests: A Historical Geography. Cambridge University Press, Cambridge, UK.
98. Williams JW, Shuman BN, Webb T III, Bartlein PJ, Leduc P, (2004) Late-Quaternary vegetation dynamics in North America: scaling from taxa to biomes. Ecological Monographs, 74, 309-334. Data archived at the World Data Center for Paleoclimatology, Boulder, Colorado, USA.
99. 2 and pollen production of common ragweed (Ambrosia artemisiifolia), a known allergy-inducing species: implications for public health. Australian Journal of Plant Physiology, 27, 893-898.