Identification and functional characterization of nonmammalian Toll-like receptor 20

Immunogenetics

Volumn 66, Issue 2, 2014, Pages 123-141

  Pietretti, Danilo ^a   Scheer, Marleen ^a   Fink, Inge R ^a   Taverne, Nico ^a   Savelkoul, Huub F J ^a   Spaink, Herman P ^b   Forlenza, Maria ^a   Wiegertjes, Geert F ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Evolution; Innate immunity; Teleost; Tlr11; Tlr20; Toll like receptors

Indexed keywords

COMPLEMENTARY DNA; TOLL LIKE RECEPTOR; TOLL LIKE RECEPTOR 11; TOLL LIKE RECEPTOR 12; TOLL LIKE RECEPTOR 13; TOLL LIKE RECEPTOR 19; TOLL LIKE RECEPTOR 2; TOLL LIKE RECEPTOR 20; TOLL LIKE RECEPTOR 21; TOLL LIKE RECEPTOR 22; TOLL LIKE RECEPTOR 26; TOLL LIKE RECEPTOR 4; TOLL LIKE RECEPTOR 5; TOLL LIKE RECEPTOR 7; TOLL LIKE RECEPTOR 8; TOLL LIKE RECEPTOR 9; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG; GREEN FLUORESCENT PROTEIN;

ANIMAL CELL; ARTICLE; B LYMPHOCYTE; CARP; CELLULAR DISTRIBUTION; CHANNEL CATFISH; CHROMOSOME 14; CHROMOSOME 16; CHROMOSOME 4; CHROMOSOME 9; CRYSTAL STRUCTURE; DNA SEQUENCE; ENDOPLASMIC RETICULUM; GENE EXPRESSION; HUMAN; HUMAN CELL; IMMUNE RESPONSE; IN VITRO STUDY; IN VIVO STUDY; LEUKOCYTE; LIGAND BINDING; MOLECULAR WEIGHT; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; PROTOZOAL INFECTION; SECRETORY PATHWAY; SEQUENCE ALIGNMENT; STOP CODON; SYNTENY; UPREGULATION; ZEBRA FISH; AMINO ACID SEQUENCE; ANIMAL; ANIMAL DISEASE; CHEMICAL STRUCTURE; CLASSIFICATION; FISH DISEASE; GENE EXPRESSION REGULATION; GENETICS; IMMUNOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PARASITOLOGY; REPORTER GENE; SEQUENCE HOMOLOGY; TRYPANOSOMA; TRYPANOSOMIASIS;

CYPRINIDAE; CYPRINUS CARPIO; DANIO RERIO; OSTEICHTHYES; PROTOZOA; TELEOSTEI; TRYPANOPLASMA BORRELI; VERTEBRATA;

AMINO ACID SEQUENCE; ANIMALS; B-LYMPHOCYTES; CARPS; EVOLUTION, MOLECULAR; FISH DISEASES; GENE EXPRESSION REGULATION; GENES, REPORTER; GREEN FLUORESCENT PROTEINS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TOLL-LIKE RECEPTORS; TRYPANOSOMA; TRYPANOSOMIASIS; ZEBRAFISH;

EID: 84897018929     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-013-0751-4     Document Type: Article

References (63)

1. Akira S, Uematsu S, Takeuchi O (2006) Pathogen recognition and innate immunity. Cell 124:783-802
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Ariffin JK, Sweet MJ (2013) Differences in the repertoire, regulation and function of Toll-like receptors and inflammasome-forming Nod-like receptors between human and mouse. Curr Opin Microbiol 16:303-310
4. Baoprasertkul P, Xu P, Peatman E, Kucuktas H, Liu Z (2007) Divergent Toll-like receptors in catfish (Ictalurus punctatus) : TLR5S, TLR20, TLR21. Fish Shellfish Immunol 23:1218-1230 (Pubitemid 350047545)
5. Bell JK, Mullen GE, Leifer CA, Mazzoni A, Davies DR, Segal DM (2003) Leucine-rich repeats and pathogen recognition in Toll-like receptors. Trends Immunol 24:528-533 (Pubitemid 37205203)
6. Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette B, Rapp BA, Wheeler DL (1999) GenBank. Nucleic Acids Res 27:12
7. Boyd AC, Peroval MY, Hammond JA, Prickett MD, Young JR, Smith AL (2012) TLR15 is unique to avian and reptilian lineages and recognizes a yeast-derived agonist. J Immunol 189:4930-4938
8. Brownlie R, Allan B (2011) Avian toll-like receptors. Cell Tissue Res 343:121-130
9. Brownlie R, Zhu J, Allan B, Mutwiri GK, Babiuk LA, Potter A, Griebel P (2009) Chicken TLR21 acts as a functional homologue to mammalian TLR9 in the recognition of CpG oligodeoxynucleotides. Mol Immunol 46:3163-3170
10. DeFranco AL, Rookhuizen DC, Hou B (2012) Contribution of Toll-like receptor signaling to germinal center antibody responses. Immunol Rev 247:64-72
11. Driever W, Rangini Z (1993) Characterization of a cell line derived from zebrafish (Brachydanio rerio) embryos. In Vitro Cell Dev Biol Anim 29:749-754 (Pubitemid 23315948)
12. Eswar N, Webb B, Marti-Renom MA, Madhusudhan M, Eramian D, Shen M-y, Pieper U, Sali A (2006) Comparative protein structure modeling using Modeller. Curr Protoc Bioinforma 5.6.1-5.6.30
13. Faisal M, Ahne W (1990) A cell line (CLC) of adherent peripheral blood mononuclear leucocytes of normal common carp Cyprinus carpio. Dev Comp Immunol 14:255-260 (Pubitemid 20365899)
14. Fijan N, Sulimanović D, Bearzotti M, Muzinić D, Zwillenberg L, Chilmonczyk S, Vautherot J, De Kinkelin P (1983) Some properties of the Epithelioma papulosum cyprini (EPC) cell line from carp Cyprinus carpio. Elsevier/Annales de l'Institut Pasteur/Virologie, Amsterdam
15. Flicek P, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S (2012) Ensembl 2012. Nucleic acids Res 40:D84-D90
16. Forlenza M, Dias JD, Veselý T, Pokorová D, Savelkoul HF, Wiegertjes GF (2008a) Transcription of signal-3 cytokines, IL-12 and IFNαβ, coincides with the timing of CD8αβ up-regulation during viral infection of common carp (Cyprinus carpio L.). Mol Immunol 45:1531-1547 (Pubitemid 351221146)
17. Forlenza M, Scharsack JP, Kachamakova NM, Taverne-Thiele AJ, Rombout JH, Wiegertjes GF (2008b) Differential contribution of neutrophilic granulocytes and macrophages to nitrosative stress in a host-parasite animal model. Mol Immunol 45:3178-3189
18. Forlenza M, Kaiser T, Savelkoul H, Wiegertjes GF (2012) The use of real-time quantitative PCR for the analysis of cytokine mRNA levels. Methods Mol Biol 820:7 (Clifton, NJ)
19. Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic acids Res 31:3784-3788 (Pubitemid 37442246)
20. Hegedu{combining double acute accent}s Z, Zakrzewska A, Ágoston VC, Ordas A, Rácz P, Mink M, Spaink HP, Meijer AH (2009) Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Mol Immunol 46:2918-2930
21. Henkel CV, Dirks RP, Jansen HJ, Forlenza M, Wiegertjes GF, Howe K, van den Thillart GE, Spaink HP (2012) Comparison of the Exomes of Common Carp (Cyprinus carpio) and Zebrafish (Danio rerio). Zebrafish 9:59-67
22. Iliev DB, Skjæveland I, Jørgensen JB (2013) CpG oligonucleotides bind TLR9 and RRM-containing proteins in Atlantic salmon (Salmo salar). BMC Immunol 14:1-12
23. Irnazarow I (1995) Genetic variability of Polish and Hungarian carp lines. Aquaculture 129:215-219
24. Ishii A, Kawasaki M, Matsumoto M, Tochinai S, Seya T (2007) Phylogenetic and expression analysis of amphibian Xenopus Toll-like receptors. Immunogenetics 59:281-293 (Pubitemid 46392998)
25. Joerink M, Forlenza M, Ribeiro C, de Vries BJ, Savelkoul HF, Wiegertjes GF (2006) Differential macrophage polarisation during parasitic infections in common carp (Cyprinus carpio L.). Fish Shellfish Immunol 21:561-571 (Pubitemid 44499024)
26. Kawai T, Akira S (2010) The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors. Nat Immunol 11: 373-384
27. Keestra AM, de Zoete MR, van Aubel RA, van Putten JP (2007) The central leucine-rich repeat region of chicken TLR16 dictates unique ligand specificity and species-specific interaction with TLR2. J Immunol 178:7110-7119 (Pubitemid 46847437)
28. Koblansky AA, Jankovic D, Oh H, Hieny S, Sungnak W, Mathur R, Hayden Matthew S, Akira S, Sher A, Ghosh S (2013) Recognition of profilin by Toll-like receptor 12 is critical for host resistance to Toxoplasma gondii. Immunity 38:119-130
29. Koumans-van Diepen JE, Egberts E, Peixoto BR, Taverne N, Rombout JH (1995) B cell and immunoglobulin heterogeneity in carp (Cyprinus carpio L); An immuno (cyto) chemical study. Dev Comp Immunol 19:97-108
30. Lee CC, Avalos AM, Ploegh HL (2012) Accessory molecules for Toll-like receptors and their function. Nat Rev Immunol 12:168-179
31. Lee BL, Moon JE, Shu JH, Yuan L, Newman ZR, Schekman R, Barton GM (2013) UNC93B1 mediates differential trafficking of endosomal TLRs. eLife 2
32. Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 40:D302-D305
33. Matsuo A, Oshiumi H, Tsujita T, Mitani H, Kasai H, Yoshimizu M, Matsumoto M, Seya T (2008) Teleost TLR22 recognizes RNA duplex to induce IFN and protect cells from birnaviruses. J Immunol 181:3474-3485
34. Matsushima N, Tanaka T, Enkhbayar P, Mikami T, Taga M, Yamada K, Kuroki Y (2007) Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors. BMC Genomics 8:124
35. Medzhitov R, Preston-Hurlburt P, Janeway CA (1997) A human homologue of the Drosophila Toll protein signals activation of adaptive immunity. Nature 388:394-397 (Pubitemid 27334820)
36. Meijer AH, Gabby KS, Medina RI, He S, Bitter W, Ewa S-JB, Spaink HP (2004) Expression analysis of the Toll-like receptor and TIR domain adaptor families of zebrafish. Mol Immunol 40:773
37. Nielsen H, Engelbrecht J, Brunak S, Von Heijne G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10:1-6
38. Oldenburg M, Kruger A, Ferstl R, Kaufmann A, Nees G, Sigmund A, Bathke B, Lauterbach H, Suter M, Dreher S (2012) TLR13 recognizes bacterial 23S rRNA devoid of erythromycin resistance-forming modification. Sci Signal 337:1111
39. Oshiumi H, Tsujita T, Shida K, Matsumoto M, Ikeo K, Seya T (2003) Prediction of the prototype of the human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome. Immunogenetics 54:791-800 (Pubitemid 36384474)
40. Palti Y (2011) Toll-like receptors in bony fish: fromgenomics to function. Dev Comp Immunol 35:1263-1272
41. Palti Y, Rodriguez M, Vallejo R, Rexroad C (2006)Mapping of Toll-like receptor genes in rainbow trout. Anim Genet 37:597-598 (Pubitemid 44789667)
42. Park H, Huxley-Jones J, Boot-Handford R, Bishop P, Attwood T, Bella J (2008) LRRCE: a leucine-rich repeat cysteine capping motif unique to the chordate lineage. BMC Genomics 9:599
43. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci 85:2444-2448
44. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29:e45
45. Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol lett 26:509-515 (Pubitemid 38448421)
46. Pietretti D, Spaink HP, Falco A, Forlenza M, Wiegertjes GF (2013) Accessory molecules for Toll-like receptors in teleost fish. Identification of TLR4 interactor with leucine-rich repeats (TRIL). Mol Immunol 56:745-756
47. Pridgeon J, Russo R, Shoemaker C, Klesius P (2010) Expression profiles of toll-like receptors in anterior kidney of channel catfish, Ictalurus punctatus (Rafinesque), acutely infected by Edwardsiella ictaluri. J Fish Dis 33:497-505
48. Quiniou S, Waldbieser G (2011) Mapping of the Toll-like receptor family in channel catfish, Ictalurus punctatus. Anim Genet 42:567-568
49. Quiniou SM, Boudinot P, Bengtén E (2013) Comprehensive survey and genomic characterization of Toll-like receptors (TLRs) in channel catfish, Ictalurus punctatus : identification of novel fish TLRs. Immunogenetics 65:511-530
50. Rebl A, Goldammer T, Seyfert H-M(2010) Toll-like receptor signaling in bony fish. Vet Immunol Immunopathol 134:139-150
51. Roach JC, Glusman G, Rowen L, Kaur A, Purcell MK, Smith KD, Hood LE, Aderem A (2005) The evolution of vertebrate Toll-like receptors. Proc Natl Acad Sci U S A 102:9577-9582 (Pubitemid 40981723)
52. Rombout J, Koumans-van Diepen J, Emmer P, Taverne-Thiele J, Taverne N (1996) Characterization of carp thrombocytes with specific monoclonal antibodies. J Fish Biol 49:521-531 (Pubitemid 27010252)
53. Ruszczyk A, Forlenza M, Joerink M, Ribeiro C, Jurecka P, Wiegertjes GF (2008) Trypanoplasma borreli cysteine proteinase activities support a conservation of function with respect to digestion of host proteins in common carp. Dev Comp Immunol 32:1348-1361
54. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
55. Šali A, Blundell TL (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234:779-815 (Pubitemid 24007801)
56. Secombes C, Van Groningen J, Egberts E (1983) Separation of lymphocyte subpopulations in carp Cyprinus carpio L. by monoclonal antibodies: immunohistochemical studies. Immunology 48:165
57. Stolte EH, Savelkoul HF, Wiegertjes G, Flik G, Lidy Verburg-van Kemenade B (2008) Differential expression of two interferon-γ genes in common carp (Cyprinus carpio L.). Dev Comp Immunol 32:1467-1481
58. Sundaram AY, Kiron V, Dopazo J, Fernandes JM (2012) Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua. BMC Evol Biol 12:256
59. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Mol Biol Evol 28:2731-2739
60. Veneman WJ, Stockhammer OW, de Boer L, Zaat SA, Meijer AH, Spaink HP (2013) A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery. BMC Genomics 14:255
61. Yarovinsky F, Zhang D, Andersen JF, Bannenberg GL, Serhan CN, Hayden MS, Hieny S, Sutterwala FS, Flavell RA, Ghosh S (2005) TLR11 activation of dendritic cells by a protozoan profilin-like protein. Science 308:1626-1629 (Pubitemid 40807512)
62. Yilmaz A, Shen S, Adelson DL, Xavier S, Zhu JJ (2005) Identification and sequence analysis of chicken Toll-like receptors. Immunogenetics 56:743-753 (Pubitemid 40174969)
63. Zuckerkandl E, Pauling L (1965) Molecules as documents of evolutionary history. J Theor Biol 8:357-366