-
1
-
-
11144345147
-
Palaeomicrobiology: Current issues and perspectives
-
Drancourt M, Raoult D, (2005) Palaeomicrobiology: Current issues and perspectives. Nature Reviews Microbiology 3: 23-35.
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 23-35
-
-
Drancourt, M.1
Raoult, D.2
-
2
-
-
0033731797
-
Molecular identification by "suicide PCR" of Yersinia pestis as the agent of medieval black death
-
Raoult D, Aboudharam G, Crubezy E, Larrouy G, Ludes B, et al. (2000) Molecular identification by "suicide PCR" of Yersinia pestis as the agent of medieval black death. Proc Natl Acad Sci USA 97: 12800-12803.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12800-12803
-
-
Raoult, D.1
Aboudharam, G.2
Crubezy, E.3
Larrouy, G.4
Ludes, B.5
-
3
-
-
4444274596
-
Genotyping, Orientalis-like Yersinia pestis, and plague pandemics
-
Drancourt M, Roux V, Dang LV, Tran-Hung L, Castex D, et al. (2004) Genotyping, Orientalis-like Yersinia pestis, and plague pandemics. Emerg Infect Dis 10: 1585-1592.
-
(2004)
Emerg Infect Dis
, vol.10
, pp. 1585-1592
-
-
Drancourt, M.1
Roux, V.2
Dang, L.V.3
Tran-Hung, L.4
Castex, D.5
-
4
-
-
10044250179
-
Detection of Yersinia pestis DNA in two early medieval skeletal finds from Aschheim (Upper Bavaria, 6th century A.D.)
-
Wiechmann I, Grupe G, (2005) Detection of Yersinia pestis DNA in two early medieval skeletal finds from Aschheim (Upper Bavaria, 6th century A.D.). Am J Phys Anthropol 126: 48-55.
-
(2005)
Am J Phys Anthropol
, vol.126
, pp. 48-55
-
-
Wiechmann, I.1
Grupe, G.2
-
5
-
-
78449251317
-
Distinct clones of Yersinia pestis caused the black death
-
Haensch S, Bianucci R, Signoli M, Rajerison M, Schultz M, et al. (2010) Distinct clones of Yersinia pestis caused the black death. PLoS Pathog 6.
-
(2010)
PLoS Pathog
, vol.6
-
-
Haensch, S.1
Bianucci, R.2
Signoli, M.3
Rajerison, M.4
Schultz, M.5
-
6
-
-
54949113246
-
Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a NeolithicSettlement in the Eastern Mediterranean
-
Hershkovitz I, Donoghue HD, Minnikin DE, Besra GS, Lee OYC, et al. (2008) Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a NeolithicSettlement in the Eastern Mediterranean. PLoS One 3: e3426.
-
(2008)
PLoS One
, vol.3
-
-
Hershkovitz, I.1
Donoghue, H.D.2
Minnikin, D.E.3
Besra, G.S.4
Lee, O.Y.C.5
-
8
-
-
79951923479
-
The Characterization of Helicobacter pylori DNA Associated with Ancient Human Remains Recovered from a Canadian Glacier
-
Swanston T, Haakensen M, Deneer H, Walker EG, (2011) The Characterization of Helicobacter pylori DNA Associated with Ancient Human Remains Recovered from a Canadian Glacier. PLosone 6: e16864.
-
(2011)
PLosone
, vol.6
-
-
Swanston, T.1
Haakensen, M.2
Deneer, H.3
Walker, E.G.4
-
9
-
-
0033613659
-
How microbial ancient DNA, found in association with human remains, can be interpreted
-
Rollo F, Marota I, (1999) How microbial ancient DNA, found in association with human remains, can be interpreted. Philos Trans R Soc Lond B Biol Sci 354: 111-119.
-
(1999)
Philos Trans R Soc Lond B Biol Sci
, vol.354
, pp. 111-119
-
-
Rollo, F.1
Marota, I.2
-
10
-
-
1242273715
-
Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims
-
Gilbert MT, Cuccui J, White W, Lynnerup N, Titball RW, et al. (2004) Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims. Microbiology 150: 341-354.
-
(2004)
Microbiology
, vol.150
, pp. 341-354
-
-
Gilbert, M.T.1
Cuccui, J.2
White, W.3
Lynnerup, N.4
Titball, R.W.5
-
11
-
-
65949108590
-
Metagenomic pyrosequencing and microbial identification
-
Petrosino JF, Highlander S, Luna RA, Gibbs RA, Versalovic J, (2009) Metagenomic pyrosequencing and microbial identification. Clin Chem 55: 856-866.
-
(2009)
Clin Chem
, vol.55
, pp. 856-866
-
-
Petrosino, J.F.1
Highlander, S.2
Luna, R.A.3
Gibbs, R.A.4
Versalovic, J.5
-
12
-
-
31144442151
-
Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA
-
Poinar HN, Schwarz C, Qi J, Shapiro B, MacPhee RDE, et al. (2006) Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA. Science 311: 392.
-
(2006)
Science
, vol.311
, pp. 392
-
-
Poinar, H.N.1
Schwarz, C.2
Qi, J.3
Shapiro, B.4
MacPhee, R.D.E.5
-
13
-
-
1242299736
-
Isolation of nucleic acids and cultures from fossil ice and permafrost
-
Willerslev E, Hansen AJ, Poinar HN, (2004) Isolation of nucleic acids and cultures from fossil ice and permafrost. Trends Ecol Evol 19: 141-147.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 141-147
-
-
Willerslev, E.1
Hansen, A.J.2
Poinar, H.N.3
-
14
-
-
77649254282
-
Human evolution in Siberia: from frozen bodies to ancient DNA
-
Crubezy E, Amory S, Keyser C, Bouakaze C, Bodner M, et al. (2010) Human evolution in Siberia: from frozen bodies to ancient DNA. BMC Evol Biol 10: 25.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 25
-
-
Crubezy, E.1
Amory, S.2
Keyser, C.3
Bouakaze, C.4
Bodner, M.5
-
15
-
-
77953913772
-
Chamane Kyss, jeune fille des glaces
-
Paris
-
Crubézy E, Alekseev AN, (2007) Chamane Kyss, jeune fille des glaces. Paris.
-
(2007)
-
-
Crubézy, E.1
Alekseev, A.N.2
-
16
-
-
42349093247
-
A new method to extract dental pulp DNA: application to universal detection of bacteria
-
Tran-Hung L, Tran-Thi N, Aboudharam G, Raoult D, Drancourt M, (2007) A new method to extract dental pulp DNA: application to universal detection of bacteria. PLoS One 2: e1062.
-
(2007)
PLoS One
, vol.2
-
-
Tran-Hung, L.1
Tran-Thi, N.2
Aboudharam, G.3
Raoult, D.4
Drancourt, M.5
-
17
-
-
0034058067
-
Contamination and sensitivity issues with a Real-Time Universal 16S rRna PCR
-
Corless CE, Guiver M, Borrow R, Edwards-Jones V, Kaczmarski EB, et al. (2000) Contamination and sensitivity issues with a Real-Time Universal 16S rRna PCR. Journal of clinical Microbiology 38: 1474-1752.
-
(2000)
Journal of Clinical Microbiology
, vol.38
, pp. 1474-1752
-
-
Corless, C.E.1
Guiver, M.2
Borrow, R.3
Edwards-Jones, V.4
Kaczmarski, E.B.5
-
18
-
-
85197063165
-
Livings cells in permafrost as model for astrobiology research
-
In: Castello J, Roger S, editors, Princeton, Princeton University Press
-
Vorobya E, Soina V, Mamukelashvili A, Bolshakova A, Yaminsky I, et al. (2005) Livings cells in permafrost as model for astrobiology research. In: Castello J, Roger S, editors. Life in ancient ice Princeton Princeton University Press pp. 277-289.
-
(2005)
Life in Ancient Ice
, pp. 277-289
-
-
Vorobya, E.1
Soina, V.2
Mamukelashvili, A.3
Bolshakova, A.4
Yaminsky, I.5
-
19
-
-
34250759399
-
Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology
-
Gilichinsky DA, Wilson GS, Friedmann EI, McKay CP, Sletten RS, et al. (2007) Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology. Astrobiology 7: 275-311.
-
(2007)
Astrobiology
, vol.7
, pp. 275-311
-
-
Gilichinsky, D.A.1
Wilson, G.S.2
Friedmann, E.I.3
McKay, C.P.4
Sletten, R.S.5
-
20
-
-
42149102918
-
Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis
-
Stinear TP, Seemann T, Harrison PF, Jenkin GA, Davies JK, et al. (2008) Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. Genome Res 18: 729-741.
-
(2008)
Genome Res
, vol.18
, pp. 729-741
-
-
Stinear, T.P.1
Seemann, T.2
Harrison, P.F.3
Jenkin, G.A.4
Davies, J.K.5
-
21
-
-
33745315279
-
Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost
-
Bakermans C, Ayala-del-Rio HL, Ponder MA, Vishnivetskaya T, Gilichinsky D, et al. (2006) Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int J Syst Evol Microbiol 56: 1285-1291.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1285-1291
-
-
Bakermans, C.1
Ayala-del-Rio, H.L.2
Ponder, M.A.3
Vishnivetskaya, T.4
Gilichinsky, D.5
-
22
-
-
33748299372
-
Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov
-
Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, et al. (2006) Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles 10: 285-294.
-
(2006)
Extremophiles
, vol.10
, pp. 285-294
-
-
Rodrigues, D.F.1
Goris, J.2
Vishnivetskaya, T.3
Gilichinsky, D.4
Thomashow, M.F.5
-
23
-
-
33846667604
-
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
-
Gilbert MT, Binladen J, Miller W, Wiuf C, Willerslev E, et al. (2007) Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Research 35: 1-10.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 1-10
-
-
Gilbert, M.T.1
Binladen, J.2
Miller, W.3
Wiuf, C.4
Willerslev, E.5
-
24
-
-
43049131127
-
Palaeogenomics
-
Hofreiter M, (2008) Palaeogenomics. C R Palevol 7: 113-124.
-
(2008)
C R Palevol
, vol.7
, pp. 113-124
-
-
Hofreiter, M.1
-
25
-
-
0035581087
-
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
-
Hofreiter M, Jaenicke V, Serre D, von Haeseler A, Paabo S, (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29: 4793-4799.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4793-4799
-
-
Hofreiter, M.1
Jaenicke, V.2
Serre, D.3
von Haeseler, A.4
Paabo, S.5
-
26
-
-
33748783644
-
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
-
Stiller M, Green RE, Ronan M, Simons JF, Du L, et al. (2006) Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci USA 103: 13578-13584.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13578-13584
-
-
Stiller, M.1
Green, R.E.2
Ronan, M.3
Simons, J.F.4
Du, L.5
-
28
-
-
0042355274
-
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
-
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, et al. (2003) Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet 35: 32-40.
-
(2003)
Nat Genet
, vol.35
, pp. 32-40
-
-
Parkhill, J.1
Sebaihia, M.2
Preston, A.3
Murphy, L.D.4
Thomson, N.5
-
29
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
Marchler-Bauer A, Bryant SH, (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32: W327-331.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
30
-
-
58149203237
-
CDD: specific functional annotation with the Conserved Domain Database
-
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, et al. (2009) CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37: D205-210.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
DeWeese-Scott, C.5
-
31
-
-
0034682945
-
Ancient DNA: do it right or not at all
-
Cooper A, Poinar H, (2000) Ancient DNA: do it right or not at all. Science 289: 1139.
-
(2000)
Science
, vol.289
, pp. 1139
-
-
Cooper, A.1
Poinar, H.2
-
32
-
-
24944589560
-
Assessing ancient DNA studies
-
Gilbert M, Bandelt H, Hofreiter M, Barnes I, (2005) Assessing ancient DNA studies. Trends Ecol Evol 20: 541-544.
-
(2005)
Trends Ecol Evol
, vol.20
, pp. 541-544
-
-
Gilbert, M.1
Bandelt, H.2
Hofreiter, M.3
Barnes, I.4
-
33
-
-
78649580672
-
Ancient DNA (aDNA) studies of man and microbes: general similarities, specific differences
-
Taylor GM, Mays SA, Hugget JF, (2010) Ancient DNA (aDNA) studies of man and microbes: general similarities, specific differences. International Journal of Osteoarchaeology 20: 747-751.
-
(2010)
International Journal of Osteoarchaeology
, vol.20
, pp. 747-751
-
-
Taylor, G.M.1
Mays, S.A.2
Hugget, J.F.3
-
34
-
-
70349319800
-
Ancient DNA provides new insights into the history of south Siberian Kurgan people
-
Keyser C, Bouakaze C, Crubézy E, Nikolaev VG, Montagnon D, et al. (2009) Ancient DNA provides new insights into the history of south Siberian Kurgan people. Hum Genet 126: 395-410.
-
(2009)
Hum Genet
, vol.126
, pp. 395-410
-
-
Keyser, C.1
Bouakaze, C.2
Crubézy, E.3
Nikolaev, V.G.4
Montagnon, D.5
-
35
-
-
45149107161
-
Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica
-
Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, et al. (2005) Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. PLoS Pathog 1: e45.
-
(2005)
PLoS Pathog
, vol.1
-
-
Diavatopoulos, D.A.1
Cummings, C.A.2
Schouls, L.M.3
Brinig, M.M.4
Relman, D.A.5
-
36
-
-
54949121792
-
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae
-
Gross R, Guzman CA, Sebaihia M, dos Santos VA, Pieper DH, et al. (2008) The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9: 449.
-
(2008)
BMC Genomics
, vol.9
, pp. 449
-
-
Gross, R.1
Guzman, C.A.2
Sebaihia, M.3
dos Santos, V.A.4
Pieper, D.H.5
-
37
-
-
20444426562
-
STR-genotyping from human medieval tooth and bone samples
-
Ricaut FX, Keyser-Tracqui C, Crubezy E, Ludes B, (2005) STR-genotyping from human medieval tooth and bone samples. Forensic Sci Int 151: 31-35.
-
(2005)
Forensic Sci Int
, vol.151
, pp. 31-35
-
-
Ricaut, F.X.1
Keyser-Tracqui, C.2
Crubezy, E.3
Ludes, B.4
-
39
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
40
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
41
-
-
0029836454
-
Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies
-
Strimmer K, von Haeseler A, (1996) Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evolution 13: 964-969.
-
(1996)
Mol Biol Evolution
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
von Haeseler, A.2
-
43
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guidon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guidon, S.1
Gascuel, O.2
-
44
-
-
0004265380
-
Evolution of protein molecules
-
In Munro HN, Mammalian protein metabolism, New York Academic Press
-
Jukes TH, Cantor CR, (1969) Evolution of protein molecules. In Munro HN, Mammalian protein metabolism, New York Academic Press pp. 21-123.
-
(1969)
, pp. 21-123
-
-
Jukes, T.H.1
Cantor, C.R.2
-
45
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein J, (1985) Phylogenies and the comparative method. Am Naturalist 125: 1-15.
-
(1985)
Am Naturalist
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
46
-
-
33748144626
-
Tracking down human contamination in ancient human teeth
-
Sampietro ML, Gilbert MT, Lao O, Caramelli D, Lari M, et al. (2006) Tracking down human contamination in ancient human teeth. Mol Biol Evol 23: 1801-1807.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1801-1807
-
-
Sampietro, M.L.1
Gilbert, M.T.2
Lao, O.3
Caramelli, D.4
Lari, M.5
|