Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Xanthomonas campestris pv. campestris

Archives of Biochemistry and Biophysics

Volumn 546, Issue , 2014, Pages 53-63

  Frese, Marcel ^a   Schatschneider, Sarah ^a   Voss, Julia ^a   Vorhölter, Frank Jörg ^a   Niehaus, Karsten ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

Embden Meyerhof Parnas pathway; Glucose metabolism; Glycolysis; Pyrophosphate dependent phosphofructokinase; Two substrate enzyme kinetics

Indexed keywords

6 PHOSPHOFRUCTOKINASE; PYROPHOSPHATE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BIOINFORMATICS; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ASSAY; EXPRESSION VECTOR; GENE PRODUCT; GENOME ANALYSIS; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PATHOTYPE; PFKA GENE; PRIORITY JOURNAL; STOICHIOMETRY; XANTHOMONAS CAMPESTRIS; XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS;

EMBDEN-MEYERHOF-PARNAS PATHWAY; GLUCOSE METABOLISM; GLYCOLYSIS; PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCTOKINASE; TWO-SUBSTRATE ENZYME KINETICS;

AMINO ACID SEQUENCE; BIOCATALYSIS; COMPUTATIONAL BIOLOGY; DIPHOSPHATES; GENOME, BACTERIAL; KINETICS; MOLECULAR SEQUENCE DATA; PHOSPHOFRUCTOKINASE-1; XANTHOMONAS CAMPESTRIS;

EID: 84896880481     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2014.01.023     Document Type: Article

References (89)

1. G.M. Garrity, D.J. Brenner, N.R. Krieg, and J.T. Staley Bergey's Manual of Systematic Bacteriology 2nd Ed. 2005 Springer US
2. J.G. Swings, and E.L. Civerolo Xanthomonas 1993 Chapman & Hall London
3. R.P. Ryan, F.-J. Vorhölter, N. Potnis, J.B. Jones, M.-A. Van Sluys, A.J. Bogdanove, and J.M. Dow Nat. Rev. Microbiol. 9 2011 344 355
4. A. Becker, F. Katzen, A. Pühler, and L. Ielpi Appl. Microbiol. Biotechnol. 50 1998 145 152
5. F. García-Ochoa, V.E. Santos, J.A. Casas, and E. Gómez Biotechnol. Adv. 18 2000 549 579
6. F.-J. Vorhölter, S. Schneiker, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, V.K. Sidhu, V. Sieber, A. Tauch, S.A. Watt, B. Weisshaar, A. Becker, K. Niehaus, and A. Pühler J. Biotechnol. 134 2008 33 45
7. J.A. Frias, J.E. Richman, J.S. Erickson, and L.P. Wackett J. Biol. Chem. 286 2011 10930 10938
8. D. Talker-Huiber, J. Jose, A. Glieder, M. Pressnig, G. Stubenrauch, and H. Schwab Appl. Microbiol. Biotechnol. 61 2003 479 487
9. M.M. Eltayeb, J. Arima, and N. Mori Biotechnol. Lett. 2013 1 9
10. J.M. Dow, M.J. Daniels, F. Dums, P.C. Turner, and C. Gough J. Cell Sci. Suppl. 11 1989 59 72
11. S.A. Watt, A. Wilke, T. Patschkowski, and K. Niehaus Proteomics 5 2005 153 167
12. S. Blanvillain, D. Meyer, A. Boulanger, M. Lautier, C. Guynet, N. Denancé, J. Vasse, E. Lauber, and M. Arlat PLoS One 2 2007 e224
13. J. Serrania, F.-J. Vorhölter, K. Niehaus, A. Pühler, and A. Becker J. Biotechnol. 135 2008 309 317
14. D. Büttner, and U. Bonas FEMS Microbiol. Rev. 34 2010 107 133
15. H. Katznelson J. Bacteriol. 75 1958 540 543
16. C. Whitfield, I.W. Sutherland, and R.E. Cripps J. Gen. Microbiol. 128 1982 981 985
17. P. Pielken, K.L. Schimz, L. Eggeling, and H. Sahm Can. J. Microbiol. 34 1988 1333 1337
18. V. de Crécy-Lagard, O.M. Bouvet, P. Lejeune, and A. Danchin J. Biol. Chem. 266 1991 18154 18161
19. G.-T. Lu, J.-R. Xie, L. Chen, J.-R. Hu, S.-Q. An, H.-Z. Su, J.-X. Feng, Y.-Q. He, B.-L. Jiang, D.-J. Tang, and J.-L. Tang Microbiol. Read. Engl. 155 2009 1602 1612
20. S.-Y. Kim, B.-M. Lee, and J.-Y. Cho Biotechnol. Lett. 32 2010 527 531
21. H. Katznelson J. Bacteriol. 70 1955 469 475
22. A.C. Zagallo, and C.H. Wang J. Bacteriol. 93 1967 970 975
23. I.W. Sutherland Microbial exopolysaccharide synthesis Extracellular Microbial Polysaccharides 1st ed. 1977 ASC Washington, DC 40 57
24. F. Letisse, P. Chevallereau, J.-L. Simon, and N. Lindley J. Biotechnol. 99 2002 307 317
25. J. Blom, S.P. Albaum, D. Doppmeier, A. Pühler, F.-J. Vorhölter, M. Zakrzewski, and A. Goesmann BMC Bioinformatics 10 2009 154
26. M. Punta, P.C. Coggill, R.Y. Eberhardt, J. Mistry, J. Tate, C. Boursnell, N. Pang, K. Forslund, G. Ceric, J. Clements, A. Heger, L. Holm, E.L.L. Sonnhammer, S.R. Eddy, A. Bateman, and R.D. Finn Nucleic Acids Res. 40 2012 D290 D301
27. C. Claudel-Renard, C. Chevalet, T. Faraut, and D. Kahn Nucleic Acids Res. 31 2003 6633 6639
28. A. Marchler-Bauer, S. Lu, J.B. Anderson, F. Chitsaz, M.K. Derbyshire, C. DeWeese-Scott, J.H. Fong, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, D.I. Hurwitz, J.D. Jackson, Z. Ke, C.J. Lanczycki, F. Lu, G.H. Marchler, M. Mullokandov, M.V. Omelchenko, C.L. Robertson, J.S. Song, N. Thanki, R.A. Yamashita, D. Zhang, N. Zhang, C. Zheng, and S.H. Bryant Nucleic Acids Res. 39 2011 D225 D229
29. S. Hunter, P. Jones, A. Mitchell, R. Apweiler, T.K. Attwood, A. Bateman, T. Bernard, D. Binns, P. Bork, S. Burge, E. de Castro, P. Coggill, M. Corbett, U. Das, L. Daugherty, L. Duquenne, R.D. Finn, M. Fraser, J. Gough, D. Haft, N. Hulo, D. Kahn, E. Kelly, I. Letunic, D. Lonsdale, R. Lopez, M. Madera, J. Maslen, C. McAnulla, J. McDowall, C. McMenamin, H. Mi, P. Mutowo-Muellenet, N. Mulder, D. Natale, C. Orengo, S. Pesseat, M. Punta, A.F. Quinn, C. Rivoire, A. Sangrador-Vegas, J.D. Selengut, C.J.A. Sigrist, M. Scheremetjew, J. Tate, M. Thimmajanarthanan, P.D. Thomas, C.H. Wu, C. Yeats, and S.-Y. Yong Nucleic Acids Res. 40 2012 D306 D312
30. T.K. Attwood, A. Coletta, G. Muirhead, A. Pavlopoulou, P.B. Philippou, I. Popov, C. Romá-Mateo, A. Theodosiou, and A.L. Mitchell Database J. Biol. Databases Curation 2012 (bas019)
31. P.D. Thomas, A. Kejariwal, M.J. Campbell, H. Mi, K. Diemer, N. Guo, I. Ladunga, B. Ulitsky-Lazareva, A. Muruganujan, S. Rabkin, J.A. Vandergriff, and O. Doremieux Nucleic Acids Res. 31 2003 334 341
32. Uniprot Consortium Nucleic Acids Res. 41 2013 D43 D47
33. M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, R. Lopez, J.D. Thompson, T.J. Gibson, and D.G. Higgins Bioinforma. Oxf. Engl. 23 2007 2947 2948
34. F. Ronquist, M. Teslenko, P. van der Mark, D.L. Ayres, A. Darling, S. Höhna, B. Larget, L. Liu, M.A. Suchard, and J.P. Huelsenbeck Syst. Biol. 61 2012 539 542
35. T.F. Watt, M. Vucur, B. Baumgarth, S.A. Watt, and K. Niehaus J. Biotechnol. 140 2009 59 67
36. J. Sambrook, and D. Russel Molecular Cloning: A Laboratory Manual 3rd Ed. 2001 Cold Spring Harbor Laboratory Press New York
37. M.E. Kovach, P.H. Elzer, D.S. Hill, G.T. Robertson, M.A. Farris, R.M. Roop 2nd, and K.M. Peterson Gene 166 1995 175 176
38. V.K. Sidhu, F.J. Vorhölter, K. Niehaus, and S.A. Watt BMC Microbiol. 8 2008 87
39. A.M. Alves, G.J. Euverink, H.J. Hektor, G.I. Hessels, J. van der Vlag, J.W. Vrijbloed, D. Hondmann, J. Visser, and L. Dijkhuizen J. Bacteriol. 176 1994 6827 6835
40. W.W. Cleland Biochim. Biophys. Acta 67 1963 188 196
41. W.W. Cleland Methods Enzymol. 63 1979 103 138
42. M. Blanch, M.-E. Legaz, and C. Vicente Microbiol. Res. 163 2008 362 371
43. A.C.R. da Silva, J.A. Ferro, F.C. Reinach, C.S. Farah, L.R. Furlan, R.B. Quaggio, C.B. Monteiro-Vitorello, M.A. Van Sluys, N.F. Almeida, L.M.C. Alves, A.M. do Amaral, M.C. Bertolini, L.E.A. Camargo, G. Camarotte, F. Cannavan, J. Cardozo, F. Chambergo, L.P. Ciapina, R.M.B. Cicarelli, L.L. Coutinho, J.R. Cursino-Santos, H. El-Dorry, J.B. Faria, A.J.S. Ferreira, R.C.C. Ferreira, M.I.T. Ferro, E.F. Formighieri, M.C. Franco, C.C. Greggio, A. Gruber, A.M. Katsuyama, L.T. Kishi, R.P. Leite, E.G.M. Lemos, M.V.F. Lemos, E.C. Locali, M.A. Machado, A.M.B.N. Madeira, N.M. Martinez-Rossi, E.C. Martins, J. Meidanis, C.F.M. Menck, C.Y. Miyaki, D.H. Moon, L.M. Moreira, M.T.M. Novo, V.K. Okura, M.C. Oliveira, V.R. Oliveira, H.A. Pereira, A. Rossi, J.A.D. Sena, C. Silva, R.F. de Souza, L.A.F. Spinola, M.A. Takita, R.E. Tamura, E.C. Teixeira, R.I.D. Tezza, M. Trindade dos Santos, D. Truffi, S.M. Tsai, F.F. White, J.C. Setubal, and J.P. Kitajima Nature 417 2002 459 463
44. W. Qian, Y. Jia, S.-X. Ren, Y.-Q. He, J.-X. Feng, L.-F. Lu, Q. Sun, G. Ying, D.-J. Tang, H. Tang, W. Wu, P. Hao, L. Wang, B.-L. Jiang, S. Zeng, W.-Y. Gu, G. Lu, L. Rong, Y. Tian, Z. Yao, G. Fu, B. Chen, R. Fang, B. Qiang, Z. Chen, G.-P. Zhao, J.-L. Tang, and C. He Genome Res. 15 2005 757 767
45. A.J. Bogdanove, R. Koebnik, H. Lu, A. Furutani, S.V. Angiuoli, P.B. Patil, M.-A. Van Sluys, R.P. Ryan, D.F. Meyer, S.-W. Han, G. Aparna, M. Rajaram, A.L. Delcher, A.M. Phillippy, D. Puiu, M.C. Schatz, M. Shumway, D.D. Sommer, C. Trapnell, F. Benahmed, G. Dimitrov, R. Madupu, D. Radune, S. Sullivan, G. Jha, H. Ishihara, S.-W. Lee, A. Pandey, V. Sharma, M. Sriariyanun, B. Szurek, C.M. Vera-Cruz, K.S. Dorman, P.C. Ronald, V. Verdier, J.M. Dow, R.V. Sonti, S. Tsuge, V.P. Brendel, P.D. Rabinowicz, J.E. Leach, F.F. White, and S.L. Salzberg J. Bacteriol. 193 2011 5450 5464
46. F. Thieme, R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Büttner, C. Caldana, L. Gaigalat, A. Goesmann, S. Kay, O. Kirchner, C. Lanz, B. Linke, A.C. McHardy, F. Meyer, G. Mittenhuber, D.H. Nies, U. Niesbach-Klösgen, T. Patschkowski, C. Rückert, O. Rupp, S. Schneiker, S.C. Schuster, F.-J. Vorhölter, E. Weber, A. Pühler, U. Bonas, D. Bartels, and O. Kaiser J. Bacteriol. 187 2005 7254 7266
47. I. Pieretti, M. Royer, V. Barbe, S. Carrere, R. Koebnik, S. Cociancich, A. Couloux, A. Darrasse, J. Gouzy, M.-A. Jacques, E. Lauber, C. Manceau, S. Mangenot, S. Poussier, B. Segurens, B. Szurek, V. Verdier, M. Arlat, and P. Rott BMC Genomics 10 2009 616
48. B.-M. Lee, Y.-J. Park, D.-S. Park, H.-W. Kang, J.-G. Kim, E.-S. Song, I.-C. Park, U.-H. Yoon, J.-H. Hahn, B.-S. Koo, G.-B. Lee, H. Kim, H.-S. Park, K.-O. Yoon, J.-H. Kim, C. Jung, N.-H. Koh, J.-S. Seo, and S.-J. Go Nucleic Acids Res. 33 2005 577 586
49. H. Ochiai, Y. Inoue, M. Takeya, A. Sasaki, and H. Kaku JARQ 39 v. 4 2005 275 287
50. S.L. Salzberg, D.D. Sommer, M.C. Schatz, A.M. Phillippy, P.D. Rabinowicz, S. Tsuge, A. Furutani, H. Ochiai, A.L. Delcher, D. Kelley, R. Madupu, D. Puiu, D. Radune, M. Shumway, C. Trapnell, G. Aparna, G. Jha, A. Pandey, P.B. Patil, H. Ishihara, D.F. Meyer, B. Szurek, V. Verdier, R. Koebnik, J.M. Dow, R.P. Ryan, H. Hirata, S. Tsuyumu, S. Won Lee, Y.-S. Seo, M. Sriariyanum, P.C. Ronald, R.V. Sonti, M.-A. Van Sluys, J.E. Leach, F.F. White, and A.J. Bogdanove BMC Genomics 9 1 2008 204
51. J. Xu, P.C. Green, and R.G. Kemp J. Biol. Chem. 269 1994 15553 15557
52. Z. Li, and N.F. Phillips Protein Expr. Purif. 6 1995 319 328
53. Z. Deng, M. Huang, K. Singh, R.A. Albach, S.P. Latshaw, K.P. Chang, and R.G. Kemp Biochem. J. 329 1998 659 664
54. A.M. Alves, G.J. Euverink, H. Santos, and L. Dijkhuizen J. Bacteriol. 183 2001 7231 7240
55. Y. Shirakihara, and P.R. Evans J. Mol. Biol. 204 1988 973 994
56. A. Chi, and R.G. Kemp J. Biol. Chem. 275 2000 35677 35679
57. S. Claustre, C. Denier, F. Lakhdar-Ghazal, A. Lougare, C. Lopez, N. Chevalier, P.A.M. Michels, J. Périé, and M. Willson Biochemistry (Mosc.) 41 2002 10183 10193
58. S.A. Moore, R.S. Ronimus, R.S. Roberson, and H.W. Morgan Structure 1993 10 2002 659 671
59. R.E. Reeves, D.J. South, H.J. Blytt, and L.G. Warren J. Biol. Chem. 249 1974 7737 7741
60. C.H. Shu, and S.T. Yang Biotechnol. Bioeng. 35 1990 454 468
61. L.A. Fothergill-Gilmore, and P.A. Michels Prog. Biophys. Mol. Biol. 59 1993 105 235
62. E. Mertens Parasitol. Today Pers. Ed. 9 1993 122 126
63. W.E. O'Brien, S. Bowien, and H.G. Wood J. Biol. Chem. 250 1975 8690 8695
64. B. Siebers, H.-P. Klenk, and R. Hensel J. Bacteriol. 180 1998 2137 2143
65. N.W. Carnal, and C.C. Black Plant Physiol. 71 1983 150 155
66. K. Miyatake, T. Enomoto, and S. Kitaoka Agric. Biol. Chem. 48 1984 2857 2859
67. E. Mertens Mol. Biochem. Parasitol. 40 1990 147 149
68. E. Mertens FEBS Lett. 285 1991 1 5
69. N.T. Kruger, and D.T. Dennis Arch. Biochem. Biophys. 256 1987 273 279
70. D.-J. Tang, Y.-Q. He, J.-X. Feng, B.-R. He, B.-L. Jiang, G.-T. Lu, B. Chen, and J.-L. Tang J. Bacteriol. 187 2005 6231 6237
71. Y.R. Musa, K. Bäsell, S. Schatschneider, F.-J. Vorhölter, D. Becher, and K. Niehaus J. Biotechnol. 167 2013 111 122
72. R. Köplin, W. Arnold, B. Hötte, R. Simon, G. Wang, and A. Pühler J. Bacteriol. 174 1992 191 199
73. S.Y. Tung, and T.T. Kuo Appl. Environ. Microbiol. 65 1999 5564 5570
74. S. Schatschneider, M. Persicke, S.A. Watt, G. Hublik, A. Pühler, K. Niehaus, and F.-J. Vorhölter J. Biotechnol. 167 2013 123 134
75. E. Mertens, U.S. Ladror, J.A. Lee, A. Miretsky, A. Morris, C. Rozario, R.G. Kemp, and M. Müller J. Mol. Evol. 47 1998 739 750
76. E. Bapteste, D. Moreira, and H. Philippe Gene 318 2003 185 191
77. M. Baltscheffsky, A. Schultz, and H. Baltscheffsky FEBS Lett. 457 1999 527 533
78. A. Serrano, J.R. Pérez-Castiñeira, M. Baltscheffsky, and H. Baltscheffsky IUBMB Life 59 2007 76 83
79. D. Aldon, B. Brito, C. Boucher, and S. Genin EMBO J. 19 2000 2304 2314
80. B. Brito, D. Aldon, P. Barberis, C. Boucher, and S. Genin Mol. Plant Microbe Interact. 15 2002 109 119
81. L.G. Rahme, M.N. Mindrinos, and N.J. Panopoulos J. Bacteriol. 174 1992 3499 3507
82. R. Schulte, and U. Bonas J. Bacteriol. 174 1992 815 823
83. W. Guo, L. Zou, Y. Li, Y. Cui, Z. Ji, L. Cai, H. Zou, W.C. Hutchins, C. Yang, and G. Chen PLoS One 7 2012 e31855
84. D. Hanahan J. Mol. Biol. 166 1983 557 580
85. Z. Deng, D. Roberts, X. Wang, and R.G. Kemp Arch. Biochem. Biophys. 371 1999 326 331
86. E. Saavedra, R. Encalada, E. Pineda, R. Jasso-Chávez, and R. Moreno-Sánchez FEBS J. 272 2005 1767 1783
87. R.D. Finn, J. Mistry, J. Tate, P. Coggill, A. Heger, J.E. Pollington, O.L. Gavin, P. Gunasekaran, G. Ceric, K. Forslund, L. Holm, E.L.L. Sonnhammer, S.R. Eddy, and A. Bateman Nucleic Acids Res. 38 2010 D211 D222
88. N. Parkinson, C. Cowie, J. Heeney, and D. Stead Int. J. Syst. Evol. Microbiol. 59 2009 264 274
89. J.L.W. Rademaker, F.J. Louws, M.H. Schultz, U. Rossbach, L. Vauterin, J. Swings, and F.J. de Bruijn Phytopathology 95 2005 1098 1111