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Volumn 11, Issue 2, 2014, Pages 134-145

Brahma regulates a specific trans-splicing event at the mod(mdg4) locus of Drosophila melanogaster

Author keywords

ATPase activity; Chromatin remodeling; RNA polymerase II; Splicing; SWI SNF

Indexed keywords

ADENOSINE TRIPHOSPHATASE; BRM PROTEIN; RNA ISOFORM; RNA POLYMERASE II;

EID: 84896820949     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.27866     Document Type: Article
Times cited : (15)

References (39)
  • 1
    • 80455144530 scopus 로고    scopus 로고
    • Spliceosome structure and function
    • PMID:21441581
    • Will CL, Lührmann R. Spliceosome structure and function. Cold Spring Harb Perspect Biol 2011; 3:a003707; PMID:21441581; http://dx.doi.org/10.1101/ cshperspect.a003707
    • (2011) Cold Spring Harb Perspect Biol , vol.3
    • Will, C.L.1    Lührmann, R.2
  • 2
    • 18344364099 scopus 로고    scopus 로고
    • Understanding alternative splicing: Towards a cellular code
    • PMID:15956978
    • Matlin AJ, Clark F, Smith CWJ. Understanding alternative splicing: towards a cellular code. Nat Rev Mol Cell Biol 2005; 6:386-98; PMID:15956978; http://dx.doi.org/10.1038/nrm1645
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 386-398
    • Matlin, A.J.1    Clark, F.2    Smith, C.W.J.3
  • 3
    • 0142247085 scopus 로고    scopus 로고
    • trans and cis splicing in trypanosomatids: Mechanism, factors, and regulation
    • PMID:14555465
    • Liang XH, Haritan A, Uliel S, Michaeli S. trans and cis splicing in trypanosomatids: mechanism, factors, and regulation. Eukaryot Cell 2003; 2:830-40; PMID:14555465; http://dx.doi.org/10.1128/EC.2.5.830-840.2003
    • (2003) Eukaryot Cell , vol.2 , pp. 830-840
    • Liang, X.H.1    Haritan, A.2    Uliel, S.3    Michaeli, S.4
  • 4
    • 32544451144 scopus 로고    scopus 로고
    • Alternative trans-splicing: A novel mode of pre-mRNA processing
    • PMID:16417469
    • Horiuchi T, Aigaki T. Alternative trans-splicing: a novel mode of pre-mRNA processing. Biol Cell 2006; 98:135-40; PMID:16417469; http://dx.doi.org/10.1042/BC20050002
    • (2006) Biol Cell , vol.98 , pp. 135-140
    • Horiuchi, T.1    Aigaki, T.2
  • 5
    • 0032514755 scopus 로고    scopus 로고
    • Natural trans-splicing in carnitine octanoyltransferase pre-mRNAs in rat liver
    • PMID:9770461
    • Caudevilla C, Serra D, Miliar A, Codony C, Asins G, Bach M, Hegardt FG. Natural trans-splicing in carnitine octanoyltransferase pre-mRNAs in rat liver. Proc Natl Acad Sci U S A 1998; 95:12185-90; PMID:9770461; http://dx.doi.org/10. 1073/ pnas.95.21.12185
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 12185-12190
    • Caudevilla, C.1    Serra, D.2    Miliar, A.3    Codony, C.4    Asins, G.5    Bach, M.6    Hegardt, F.G.7
  • 6
    • 0037871901 scopus 로고    scopus 로고
    • The modifier of mdg4 locus in Drosophila: Functional complexity is resolved by trans splicing
    • PMID:12723696
    • Dorn R, Krauss V. The modifier of mdg4 locus in Drosophila: functional complexity is resolved by trans splicing. Genetica 2003; 117:165-77; PMID:12723696; http://dx.doi.org/10.1023/A:1022983810016
    • (2003) Genetica , vol.117 , pp. 165-177
    • Dorn, R.1    Krauss, V.2
  • 7
    • 33746683274 scopus 로고    scopus 로고
    • Reverse transcriptase template switching and false alternative transcripts
    • PMID:16457984
    • Cocquet J, Chong A, Zhang G, Veitia RA. Reverse transcriptase template switching and false alternative transcripts. Genomics 2006; 88:127-31; PMID:16457984; http://dx.doi.org/10.1016/j. ygeno.2005.12.013
    • (2006) Genomics , vol.88 , pp. 127-131
    • Cocquet, J.1    Chong, A.2    Zhang, G.3    Veitia, R.A.4
  • 8
    • 77955622547 scopus 로고    scopus 로고
    • Global analysis of trans-splicing in Drosophila
    • PMID:20615941
    • McManus CJ, Duff MO, Eipper-Mains J, Graveley BR. Global analysis of trans-splicing in Drosophila. Proc Natl Acad Sci U S A 2010; 107:12975-9; PMID:20615941; http://dx.doi.org/10.1073/pnas.1007586107
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 12975-12979
    • McManus, C.J.1    Duff, M.O.2    Eipper-Mains, J.3    Graveley, B.R.4
  • 9
    • 84878945320 scopus 로고    scopus 로고
    • Trans-splicing correction of tau isoform imbalance in a mouse model of tau mis-splicing
    • Epub ahead of print PMID:23459933
    • Avale ME, Rodríguez-Martín T, Gallo JM. Trans-splicing correction of tau isoform imbalance in a mouse model of tau mis-splicing. [Epub ahead of print]. Hum Mol Genet 2013; 22:2603-11; PMID:23459933; http://dx.doi.org/10.1093/hmg/ddt108
    • (2013) Hum Mol Genet , vol.22 , pp. 2603-2611
    • Avale, M.E.1    Rodríguez-Martín, T.2    Gallo, J.M.3
  • 10
    • 0034256020 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing: The logic of combinatorial control
    • PMID:10916158
    • Smith CW, Valcárcel J. Alternative pre-mRNA splicing: the logic of combinatorial control. Trends Biochem Sci 2000; 25:381-8; PMID:10916158; http://dx.doi.org/10.1016/S0968-0004(00)01604-2
    • (2000) Trends Biochem Sci , vol.25 , pp. 381-388
    • Smith, C.W.1    Valcárcel, J.2
  • 11
    • 0032435862 scopus 로고    scopus 로고
    • Alternative splicing of pre-mRNA: Developmental consequences and mechanisms of regulation
    • PMID:9928482
    • Lopez AJ. Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation. Annu Rev Genet 1998; 32:279-305; PMID:9928482; http://dx.doi.org/10.1146/annurev.genet.32.1.279
    • (1998) Annu Rev Genet , vol.32 , pp. 279-305
    • Lopez, A.J.1
  • 13
    • 0037107547 scopus 로고    scopus 로고
    • On the importance of being co-transcriptional
    • PMID:12244124
    • Neugebauer KM. On the importance of being co-transcriptional. J Cell Sci 2002; 115:3865-71; PMID:12244124; http://dx.doi.org/10.1242/jcs.00073
    • (2002) J Cell Sci , vol.115 , pp. 3865-3871
    • Neugebauer, K.M.1
  • 14
    • 2142716979 scopus 로고    scopus 로고
    • The link between mRNA processing and transcription: Communication works both ways
    • PMID:15120999
    • Zorio DA, Bentley DL. The link between mRNA processing and transcription: communication works both ways. Exp Cell Res 2004; 296:91-7; PMID:15120999; http://dx.doi.org/10.1016/j.yexcr.2004.03.019
    • (2004) Exp Cell Res , vol.296 , pp. 91-97
    • Zorio, D.A.1    Bentley, D.L.2
  • 15
    • 30044440197 scopus 로고    scopus 로고
    • Chromatin, transcript elongation and alternative splicing
    • PMID:16395314
    • Kornblihtt AR. Chromatin, transcript elongation and alternative splicing. Nat Struct Mol Biol 2006; 13:5-7; PMID:16395314; http://dx.doi.org/10.1038/ nsmb0106-5
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 5-7
    • Kornblihtt, A.R.1
  • 16
    • 78650961149 scopus 로고    scopus 로고
    • Epigenetics in alternative pre-mRNA splicing
    • PMID:21215366
    • Luco RF, Allo M, Schor IE, Kornblihtt AR, Misteli T. Epigenetics in alternative pre-mRNA splicing. Cell 2011; 144:16-26; PMID:21215366; http://dx.doi.org/10.1016/j.cell.2010.11.056
    • (2011) Cell , vol.144 , pp. 16-26
    • Luco, R.F.1    Allo, M.2    Schor, I.E.3    Kornblihtt, A.R.4    Misteli, T.5
  • 17
    • 44449158814 scopus 로고    scopus 로고
    • Splicing, transcription, and chromatin: A ménage à trois
    • PMID:18372167
    • Allemand E, Batsché E, Muchardt C. Splicing, transcription, and chromatin: a ménage à trois. Curr Opin Genet Dev 2008; 18:145-51; PMID:18372167; http://dx.doi.org/10.1016/j.gde.2008.01.006
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 145-151
    • Allemand, E.1    Batsché, E.2    Muchardt, C.3
  • 18
    • 30044441988 scopus 로고    scopus 로고
    • The human SWI/SNF subunit Brm is a regulator of alternative splicing
    • PMID:16341228
    • Batsché E, Yaniv M, Muchardt C. The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat Struct Mol Biol 2006; 13:22-9; PMID:16341228; http://dx.doi.org/10.1038/nsmb1030
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 22-29
    • Batsché, E.1    Yaniv, M.2    Muchardt, C.3
  • 19
    • 67149138094 scopus 로고    scopus 로고
    • SWI/SNF associates with nascent pre-mRNPs and regulates alternative pre-mRNA processing
    • PMID:19424417
    • Tyagi A, Ryme J, Brodin D, Östlund Farrants AK, Visa N. SWI/SNF associates with nascent pre-mRNPs and regulates alternative pre-mRNA processing. PLoS Genet 2009; 5:e1000470; PMID:19424417; http://dx.doi.org/10.1371/journal. pgen.1000470
    • (2009) PLoS Genet , vol.5
    • Tyagi, A.1    Ryme, J.2    Brodin, D.3    Östlund Farrants, A.K.4    Visa, N.5
  • 20
    • 80055103302 scopus 로고    scopus 로고
    • SWI/SNF regulates the alternative processing of a specific subset of pre-mRNAs in Drosophila melanogaster
    • PMID:22047075
    • Waldholm J, Wang Z, Brodin D, Tyagi A, Yu S, Theopold U, Farrants AK, Visa N. SWI/SNF regulates the alternative processing of a specific subset of pre-mRNAs in Drosophila melanogaster. BMC Mol Biol 2011; 12:46; PMID:22047075; http://dx.doi.org/10.1186/1471-2199-12-46
    • (2011) BMC Mol Biol , vol.12 , pp. 46
    • Waldholm, J.1    Wang, Z.2    Brodin, D.3    Tyagi, A.4    Yu, S.5    Theopold, U.6    Farrants, A.K.7    Visa, N.8
  • 21
    • 14544308853 scopus 로고    scopus 로고
    • Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes
    • PMID:15627498
    • Mohrmann L, Verrijzer CP. Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes. Biochim Biophys Acta 2005; 1681:59-73; PMID:15627498; http://dx.doi.org/10.1016/j.bbaexp.2004.10.005
    • (2005) Biochim Biophys Acta , vol.1681 , pp. 59-73
    • Mohrmann, L.1    Verrijzer, C.P.2
  • 22
    • 0029008811 scopus 로고
    • The Drosophila snr1 and brm proteins are related to yeast SWI/SNF proteins and are components of a large protein complex
    • PMID:7579694
    • Dingwall AK, Beek SJ, McCallum CM, Tamkun JW, Kalpana GV, Goff SP, Scott MP. The Drosophila snr1 and brm proteins are related to yeast SWI/SNF proteins and are components of a large protein complex. Mol Biol Cell 1995; 6:777-91; PMID:7579694; http://dx.doi.org/10.1091/mbc.6.7.777
    • (1995) Mol Biol Cell , vol.6 , pp. 777-791
    • Dingwall, A.K.1    Beek, S.J.2    McCallum, C.M.3    Tamkun, J.W.4    Kalpana, G.V.5    Goff, S.P.6    Scott, M.P.7
  • 23
    • 33745684794 scopus 로고    scopus 로고
    • ATP-dependent chromatin remodeling complexes in Drosophila
    • PMID:16821138
    • Bouazoune K, Brehm A. ATP-dependent chromatin remodeling complexes in Drosophila. Chromosome Res 2006; 14:433-49; PMID:16821138; http://dx.doi.org/10. 1007/s10577-006-1067-0
    • (2006) Chromosome Res , vol.14 , pp. 433-449
    • Bouazoune, K.1    Brehm, A.2
  • 24
    • 15544369280 scopus 로고    scopus 로고
    • Evolution of the trans-splicing Drosophila locus mod(mdg4) in several species of Diptera and Lepidoptera
    • PMID:15094203
    • Krauss V, Dorn R. Evolution of the trans-splicing Drosophila locus mod(mdg4) in several species of Diptera and Lepidoptera. Gene 2004; 331:165-76; PMID:15094203; http://dx.doi.org/10.1016/j.gene.2004.02.019
    • (2004) Gene , vol.331 , pp. 165-176
    • Krauss, V.1    Dorn, R.2
  • 25
    • 0027493251 scopus 로고
    • BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription
    • PMID:8232556
    • Khavari PA, Peterson CL, Tamkun JW, Mendel DB, Crabtree GR. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription. Nature 1993; 366:170-4; PMID:8232556; http://dx.doi.org/10. 1038/366170a0
    • (1993) Nature , vol.366 , pp. 170-174
    • Khavari, P.A.1    Peterson, C.L.2    Tamkun, J.W.3    Mendel, D.B.4    Crabtree, G.R.5
  • 27
    • 17444373568 scopus 로고    scopus 로고
    • Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant
    • PMID:15833917
    • Gelbart ME, Bachman N, Delrow J, Boeke JD, Tsukiyama T. Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant. Genes Dev 2005; 19:942-54; PMID:15833917; http://dx.doi.org/10.1101/gad.1298905
    • (2005) Genes Dev , vol.19 , pp. 942-954
    • Gelbart, M.E.1    Bachman, N.2    Delrow, J.3    Boeke, J.D.4    Tsukiyama, T.5
  • 28
    • 70449641057 scopus 로고    scopus 로고
    • Progression through the RNA polymerase II CTD cycle
    • PMID:19941815
    • Buratowski S. Progression through the RNA polymerase II CTD cycle. Mol Cell 2009; 36:541-6; PMID:19941815; http://dx.doi.org/10.1016/j.molcel.2009.10. 019
    • (2009) Mol Cell , vol.36 , pp. 541-546
    • Buratowski, S.1
  • 29
    • 53149107845 scopus 로고    scopus 로고
    • Chromatin insulators: Regulatory mechanisms and epigenetic inheritance
    • PMID:18851828
    • Bushey AM, Dorman ER, Corces VG. Chromatin insulators: regulatory mechanisms and epigenetic inheritance. Mol Cell 2008; 32:1-9; PMID:18851828; http://dx.doi.org/10.1016/j.molcel.2008.08.017
    • (2008) Mol Cell , vol.32 , pp. 1-9
    • Bushey, A.M.1    Dorman, E.R.2    Corces, V.G.3
  • 30
    • 84877795975 scopus 로고    scopus 로고
    • The role of chromatin insulators in nuclear architecture and genome function
    • PMID:23298659
    • Van Bortle K, Corces VG. The role of chromatin insulators in nuclear architecture and genome function. Curr Opin Genet Dev 2013; 23:212-8; PMID:23298659; http://dx.doi.org/10.1016/j.gde.2012.11.003
    • (2013) Curr Opin Genet Dev , vol.23 , pp. 212-218
    • Van Bortle, K.1    Corces, V.G.2
  • 31
    • 33845935522 scopus 로고    scopus 로고
    • Hormoneresponse genes are direct in vivo regulatory targets of Brahma (SWI/SNF) complex function
    • PMID:16990270
    • Zraly CB, Middleton FA, Dingwall AK. Hormoneresponse genes are direct in vivo regulatory targets of Brahma (SWI/SNF) complex function. J Biol Chem 2006; 281:35305-15; PMID:16990270; http://dx.doi.org/10.1074/jbc.M607806200
    • (2006) J Biol Chem , vol.281 , pp. 35305-35315
    • Zraly, C.B.1    Middleton, F.A.2    Dingwall, A.K.3
  • 32
    • 33846170060 scopus 로고    scopus 로고
    • Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control
    • PMID:17101803
    • Moshkin YM, Mohrmann L, van Ijcken WFJ, Verrijzer CP. Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control. Mol Cell Biol 2007; 27:651-61; PMID:17101803; http://dx.doi.org/10.1128/MCB. 01257-06
    • (2007) Mol Cell Biol , vol.27 , pp. 651-661
    • Moshkin, Y.M.1    Mohrmann, L.2    Van Ijcken, W.F.J.3    Verrijzer, C.P.4
  • 33
    • 84864462761 scopus 로고    scopus 로고
    • The chromatin remodeling and mRNA splicing functions of the Brahma (SWI/ SNF) complex are mediated by the SNR1/SNF5 regulatory subunit
    • PMID:22467207
    • Zraly CB, Dingwall AK. The chromatin remodeling and mRNA splicing functions of the Brahma (SWI/ SNF) complex are mediated by the SNR1/SNF5 regulatory subunit. Nucleic Acids Res 2012; 40:5975-87; PMID:22467207; http://dx.doi.org/10.1093/nar/gks288
    • (2012) Nucleic Acids Res , vol.40 , pp. 5975-5987
    • Zraly, C.B.1    Dingwall, A.K.2
  • 34
    • 79957543093 scopus 로고    scopus 로고
    • More than a splicing code: Integrating the role of RNA, chromatin and noncoding RNA in alternative splicing regulation
    • PMID:21497503
    • Luco RF, Misteli T. More than a splicing code: integrating the role of RNA, chromatin and noncoding RNA in alternative splicing regulation. Curr Opin Genet Dev 2011; 21:366-72; PMID:21497503; http://dx.doi.org/10.1016/j.gde.2011. 03.004
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 366-372
    • Luco, R.F.1    Misteli, T.2
  • 35
    • 84861925259 scopus 로고    scopus 로고
    • Design principles of interconnections between chromatin and premRNA splicing
    • PMID:22398209
    • de Almeida SF, Carmo-Fonseca M. Design principles of interconnections between chromatin and premRNA splicing. Trends Biochem Sci 2012; 37:248-53; PMID:22398209; http://dx.doi.org/10.1016/j.tibs.2012.02.002
    • (2012) Trends Biochem Sci , vol.37 , pp. 248-253
    • De Almeida, S.F.1    Carmo-Fonseca, M.2
  • 36
    • 0002535878 scopus 로고
    • TRIZOL: A new reagent for optimal single-step isolation of RNA
    • Simms D, Cizdziel PE, Chomczynski P. TRIZOL: a new reagent for optimal single-step isolation of RNA. Focus 1993; 15:99-102
    • (1993) Focus , vol.15 , pp. 99-102
    • Simms, D.1    Cizdziel, P.E.2    Chomczynski, P.3
  • 38
    • 33845970264 scopus 로고    scopus 로고
    • The Drosophila heterogeneous nuclear ribonucleoprotein M protein, HRP59, regulates alternative splicing and controls the production of its own mRNA
    • PMID:17077090
    • Hase ME, Yalamanchili P, Visa N. The Drosophila heterogeneous nuclear ribonucleoprotein M protein, HRP59, regulates alternative splicing and controls the production of its own mRNA. J Biol Chem 2006; 281:39135-41; PMID:17077090; http://dx.doi.org/10.1074/jbc.M604235200
    • (2006) J Biol Chem , vol.281 , pp. 39135-39141
    • Hase, M.E.1    Yalamanchili, P.2    Visa, N.3
  • 39
    • 68149126805 scopus 로고    scopus 로고
    • The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins
    • PMID:19494042
    • Hessle V, Björk P, Sokolowski M, González de Valdivia E, Silverstein R, Artemenko K, Tyagi A, Maddalo G, Ilag L, Helbig R, et al. The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins. Mol Biol Cell 2009; 20:3459-70; PMID:19494042; http://dx.doi.org/10.1091/mbc.E09-01-0079
    • (2009) Mol Biol Cell , vol.20 , pp. 3459-3470
    • Hessle, V.1    Björk, P.2    Sokolowski, M.3    González De Valdivia, E.4    Silverstein, R.5    Artemenko, K.6    Tyagi, A.7    Maddalo, G.8    Ilag, L.9    Helbig, R.10


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