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Volumn 18, Issue 2, 2014, Pages 195-206

Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea

Author keywords

Halorubrum; Horizontal gene transfer; Hypersaline environment; Mobile genetic elements

Indexed keywords

HALOBACTERIA; HALOBACTERIALES; HALOGEOMETRICUM; HALORUBRUM;

EID: 84896734574     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-013-0599-4     Document Type: Article
Times cited : (12)

References (54)
  • 5
    • 0031680647 scopus 로고    scopus 로고
    • His1, an archaeal virus of the Fuselloviridae family that infects Haloarcula hispanica
    • Bath C, Dyall-Smith ML (1998) His1, an archaeal virus of the Fuselloviridae family that infects Haloarcula hispanica. J Virol 72: 9392-9395.
    • (1998) J Virol , vol.72 , pp. 9392-9395
    • Bath, C.1    Dyall-Smith, M.L.2
  • 6
    • 33744929889 scopus 로고    scopus 로고
    • His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus
    • Bath C, Cukalac T, Porter K, Dyall-Smith ML (2006) His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus. Virology 350: 228-239.
    • (2006) Virology , vol.350 , pp. 228-239
    • Bath, C.1    Cukalac, T.2    Porter, K.3    Dyall-Smith, M.L.4
  • 10
    • 0026775677 scopus 로고
    • Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures
    • Charbonnier F, Erauso G, Barbeyron T, Prieur D, Forterre P (1992) Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures. J Bacteriol 174: 6103-6108.
    • (1992) J Bacteriol , vol.174 , pp. 6103-6108
    • Charbonnier, F.1    Erauso, G.2    Barbeyron, T.3    Prieur, D.4    Forterre, P.5
  • 12
    • 84871060957 scopus 로고    scopus 로고
    • Genome sequence of Halorubrum sp. strain T3, an extremely halophilic archaeon harboring a virus-like element
    • Chen S, Wang C, Zhao Z, Yang ZL (2012b) Genome sequence of Halorubrum sp. strain T3, an extremely halophilic archaeon harboring a virus-like element. J Bacteriol 194: 6608-6609.
    • (2012) J Bacteriol , vol.194 , pp. 6608-6609
    • Chen, S.1    Wang, C.2    Zhao, Z.3    Yang, Z.L.4
  • 14
    • 0037716583 scopus 로고    scopus 로고
    • Haloarchaeal viruses: how diverse are they?
    • Dyall-Smith M, Tang SL, Bath C (2003) Haloarchaeal viruses: how diverse are they? Res Microbiol 154: 309-313.
    • (2003) Res Microbiol , vol.154 , pp. 309-313
    • Dyall-Smith, M.1    Tang, S.L.2    Bath, C.3
  • 15
    • 79551488669 scopus 로고    scopus 로고
    • pAMT11, a novel plasmid isolated from a Thermococcus sp. strain closely related to the virus-like integrated element TKV1 of the Thermococcus kodakaraensis genome
    • Gonnet M, Erauso G, Prieur D, Le Romancer M (2011) pAMT11, a novel plasmid isolated from a Thermococcus sp. strain closely related to the virus-like integrated element TKV1 of the Thermococcus kodakaraensis genome. Res Microbiol 162: 132-143.
    • (2011) Res Microbiol , vol.162 , pp. 132-143
    • Gonnet, M.1    Erauso, G.2    Prieur, D.3    Le Romancer, M.4
  • 16
    • 0001338458 scopus 로고    scopus 로고
    • Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient
    • Guixa-Boixereu N (1996) Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient. Aquat Microb Ecol 11: 215-227.
    • (1996) Aquat Microb Ecol , vol.11 , pp. 215-227
    • Guixa-Boixereu, N.1
  • 17
    • 0000207681 scopus 로고
    • TM-base: a database of membrane spanning protein segments
    • Hofmann K, Stoffel W (1993) TM-base: a database of membrane spanning protein segments. Biol Chem Hoppe Seyler 374: 166.
    • (1993) Biol Chem Hoppe Seyler , vol.374 , pp. 166
    • Hofmann, K.1    Stoffel, W.2
  • 18
    • 0028850851 scopus 로고
    • Analysis of the halobacterial plasmid pHK2 minimal replicon
    • Holmes ML, Pfeifer F, Dyall-Smith ML (1995) Analysis of the halobacterial plasmid pHK2 minimal replicon. Gene 153: 117-121.
    • (1995) Gene , vol.153 , pp. 117-121
    • Holmes, M.L.1    Pfeifer, F.2    Dyall-Smith, M.L.3
  • 20
    • 33847283383 scopus 로고    scopus 로고
    • The lysogenic region of virus phiCh1: identification of a repressor-operator system and determination of its activity in halophilic Archaea
    • Iro M, Klein R, Gálos B, Baranyi U, Rössler N, Witte A (2007) The lysogenic region of virus phiCh1: identification of a repressor-operator system and determination of its activity in halophilic Archaea. Extremophiles 11: 383-396.
    • (2007) Extremophiles , vol.11 , pp. 383-396
    • Iro, M.1    Klein, R.2    Gálos, B.3    Baranyi, U.4    Rössler, N.5    Witte, A.6
  • 22
    • 0036360431 scopus 로고    scopus 로고
    • Natrialba magadii virus phiCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon
    • Klein R, Baranyi U, Rössler N, Greineder B, Scholz H, Witte A (2002) Natrialba magadii virus phiCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon. Mol Microbiol 45: 851-863.
    • (2002) Mol Microbiol , vol.45 , pp. 851-863
    • Klein, R.1    Baranyi, U.2    Rössler, N.3    Greineder, B.4    Scholz, H.5    Witte, A.6
  • 23
    • 84872257668 scopus 로고    scopus 로고
    • Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids
    • Krupovic M, Gonnet M, Hania WB, Forterre P, Erauso G (2013) Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS One 8: e49044.
    • (2013) PLoS One , vol.8
    • Krupovic, M.1    Gonnet, M.2    Hania, W.B.3    Forterre, P.4    Erauso, G.5
  • 24
    • 77949408671 scopus 로고    scopus 로고
    • Virus-host interactions in environments with a wide range of ionic strengths
    • Kukkaro P, Bamford DH (2009) Virus-host interactions in environments with a wide range of ionic strengths. Environ Microbiol Rep 1: 71-77.
    • (2009) Environ Microbiol Rep , vol.1 , pp. 71-77
    • Kukkaro, P.1    Bamford, D.H.2
  • 26
    • 84873528026 scopus 로고    scopus 로고
    • Characterization of CRISPR RNA biogenesis and Cas6 cleavage-mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei
    • Li M, Liu H, Han J, Liu J, Wang R, Zhao D, Zhou J, Xiang H (2013) Characterization of CRISPR RNA biogenesis and Cas6 cleavage-mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei. J Bacteriol 195: 867-875.
    • (2013) J Bacteriol , vol.195 , pp. 867-875
    • Li, M.1    Liu, H.2    Han, J.3    Liu, J.4    Wang, R.5    Zhao, D.6    Zhou, J.7    Xiang, H.8
  • 27
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: new solutions for gene finding
    • Lukashin AV, Borodovsky M (1998) GeneMark. hmm: new solutions for gene finding. Nucleic Acids Res 26: 1107-1115.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 28
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • Lupas A, van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252: 1162-1164.
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    van Dyke, M.2    Stock, J.3
  • 29
    • 33745161855 scopus 로고    scopus 로고
    • Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes
    • Maturrano L, Santos F, Rosselló-Mora R, Antón J (2006) Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Appl Environ Microbiol 72: 3887-3895.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3887-3895
    • Maturrano, L.1    Santos, F.2    Rosselló-Mora, R.3    Antón, J.4
  • 30
    • 35948955875 scopus 로고    scopus 로고
    • Induction and preliminary characterization of a novel halophage SNJ1 from lysogenic Natrinema sp. F5
    • Mei Y, Chen J, Sun D, Chen D, Yang Y, Shen P, Chen X (2007) Induction and preliminary characterization of a novel halophage SNJ1 from lysogenic Natrinema sp. F5. Can J Microbiol 53: 1106-1110.
    • (2007) Can J Microbiol , vol.53 , pp. 1106-1110
    • Mei, Y.1    Chen, J.2    Sun, D.3    Chen, D.4    Yang, Y.5    Shen, P.6    Chen, X.7
  • 32
    • 0027323849 scopus 로고
    • Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100
    • Ng WL, DasSarma S (1993) Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100. J Bacteriol 175: 4584-4596.
    • (1993) J Bacteriol , vol.175 , pp. 4584-4596
    • Ng, W.L.1    DasSarma, S.2
  • 33
    • 0036192263 scopus 로고    scopus 로고
    • Molecular ecology of extremely halophilic Archaea and bacteria
    • Oren A (2002) Molecular ecology of extremely halophilic Archaea and bacteria. FEMS Microbiol Ecol 39: 1-7.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 1-7
    • Oren, A.1
  • 34
    • 0031196664 scopus 로고    scopus 로고
    • Occurrence of virus-like particles in the Dead Sea
    • Oren A, Bratbak G, Heldal M (1997) Occurrence of virus-like particles in the Dead Sea. Extremophiles 1: 143-149.
    • (1997) Extremophiles , vol.1 , pp. 143-149
    • Oren, A.1    Bratbak, G.2    Heldal, M.3
  • 36
    • 39749091834 scopus 로고    scopus 로고
    • Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival
    • Peng X (2008) Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival. Microbiology 154: 383-391.
    • (2008) Microbiology , vol.154 , pp. 383-391
    • Peng, X.1
  • 37
    • 64149084027 scopus 로고    scopus 로고
    • An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope
    • Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH (2009) An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microbiol 72: 307-319.
    • (2009) Mol Microbiol , vol.72 , pp. 307-319
    • Pietilä, M.K.1    Roine, E.2    Paulin, L.3    Kalkkinen, N.4    Bamford, D.H.5
  • 40
    • 79960023277 scopus 로고    scopus 로고
    • Differences in lateral gene transfer in hypersaline versus thermal environments
    • Rhodes ME, Spear JR, Oren A, House CH (2011) Differences in lateral gene transfer in hypersaline versus thermal environments. BMC Evol Biol 11: 199.
    • (2011) BMC Evol Biol , vol.11 , pp. 199
    • Rhodes, M.E.1    Spear, J.R.2    Oren, A.3    House, C.H.4
  • 42
    • 0036038940 scopus 로고    scopus 로고
    • Adaptation of protein secretion to extremely high-salt conditions by extensive use of the twin-arginine translocation pathway
    • Rose RW, Brüser T, Kissinger JC, Pohlschröder M (2002) Adaptation of protein secretion to extremely high-salt conditions by extensive use of the twin-arginine translocation pathway. Mol Microbiol 45: 943-950.
    • (2002) Mol Microbiol , vol.45 , pp. 943-950
    • Rose, R.W.1    Brüser, T.2    Kissinger, J.C.3    Pohlschröder, M.4
  • 43
    • 70349462787 scopus 로고    scopus 로고
    • Characterization of halophiles isolated from solar salterns in Baja California, Mexico
    • Sabet S, Diallo L, Hays L, Jung W, Dillon JG (2009) Characterization of halophiles isolated from solar salterns in Baja California, Mexico. Extremophiles 13: 643-656.
    • (2009) Extremophiles , vol.13 , pp. 643-656
    • Sabet, S.1    Diallo, L.2    Hays, L.3    Jung, W.4    Dillon, J.G.5
  • 46
    • 84863226687 scopus 로고    scopus 로고
    • Related haloarchaeal pleomorphic viruses contain different genome types
    • Senčilo A, Paulin L, Kellner S, Helm M, Roine E (2012) Related haloarchaeal pleomorphic viruses contain different genome types. Nucleic Acids Res 40: 5523-5534.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5523-5534
    • Senčilo, A.1    Paulin, L.2    Kellner, S.3    Helm, M.4    Roine, E.5
  • 48
    • 65549125874 scopus 로고    scopus 로고
    • Horizontal gene transfer and mobile genetic elements in marine systems
    • Sobecky PA, Hazen TH (2009) Horizontal gene transfer and mobile genetic elements in marine systems. Methods Mol Biol 532: 435-453.
    • (2009) Methods Mol Biol , vol.532 , pp. 435-453
    • Sobecky, P.A.1    Hazen, T.H.2
  • 49
  • 51
    • 0037432696 scopus 로고    scopus 로고
    • Characterization of a novel plasmid from extremely halophilic archaea: nucleotide sequence and function analysis
    • Ye X, Ou J, Ni L, Shi W, Shen P (2003) Characterization of a novel plasmid from extremely halophilic archaea: nucleotide sequence and function analysis. FEMS Microbiol Lett 221: 53-57.
    • (2003) FEMS Microbiol Lett , vol.221 , pp. 53-57
    • Ye, X.1    Ou, J.2    Ni, L.3    Shi, W.4    Shen, P.5
  • 52
    • 20144380867 scopus 로고    scopus 로고
    • Identification of replication origins in archaeal genomes based on the Z-curve method
    • Zhang R, Zhang CT (2005) Identification of replication origins in archaeal genomes based on the Z-curve method. Archaea 1: 335-346.
    • (2005) Archaea , vol.1 , pp. 335-346
    • Zhang, R.1    Zhang, C.T.2
  • 53
    • 84870676702 scopus 로고    scopus 로고
    • Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205
    • Zhang Z, Liu Y, Wang S, Yang D, Cheng Y, Hu J, Chen J, Mei Y, Shen P, Bamford DH, Chen X (2012) Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology 434: 233-241.
    • (2012) Virology , vol.434 , pp. 233-241
    • Zhang, Z.1    Liu, Y.2    Wang, S.3    Yang, D.4    Cheng, Y.5    Hu, J.6    Chen, J.7    Mei, Y.8    Shen, P.9    Bamford, D.H.10    Chen, X.11
  • 54
    • 34247131391 scopus 로고    scopus 로고
    • Genetic analysis of a novel plasmid pZMX101 from Halorubrum saccharovorum: determination of the minimal replicon and comparison with the related haloarchaeal plasmid pSCM201
    • Zhou L, Zhou M, Sun C, Xiang H, Tan H (2007) Genetic analysis of a novel plasmid pZMX101 from Halorubrum saccharovorum: determination of the minimal replicon and comparison with the related haloarchaeal plasmid pSCM201. FEMS Microbiol Lett 270: 104-108.
    • (2007) FEMS Microbiol Lett , vol.270 , pp. 104-108
    • Zhou, L.1    Zhou, M.2    Sun, C.3    Xiang, H.4    Tan, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.