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Volumn 194, Issue 23, 2012, Pages 6608-6609

Genome sequence of Halorubrum sp. strain T3, an extremely halophilic archaeon harboring a virus-like element

Author keywords

[No Author keywords available]

Indexed keywords

CHINA; GENE SEQUENCE; GENOME SIZE; HALOPHILIC ARCHAEON; HALORUBRUM; NONHUMAN; NOTE; PRIORITY JOURNAL; VIRAL GENETICS; VIRUS CELL INTERACTION; VIRUS ISOLATION; VIRUS LIKE AGENT;

EID: 84871060957     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01528-12     Document Type: Note
Times cited : (3)

References (20)
  • 2
    • 84865564418 scopus 로고    scopus 로고
    • Lateral gene transfer occurring in haloarchaea: an interpretative imitation study
    • Chen S, et al. 2012. Lateral gene transfer occurring in haloarchaea: an interpretative imitation study. World J. Microbiol. Biotechnol. 28:2913-2918.
    • (2012) World J. Microbiol. Biotechnol. , vol.28 , pp. 2913-2918
    • Chen, S.1
  • 3
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • doi:10.1038/ncomms1937
    • Datsenko KA, et al. 2012. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat. Commun. 3:945. doi:10.1038/ncomms1937.
    • (2012) Nat. Commun. , vol.3 , pp. 945
    • Datsenko, K.A.1
  • 5
    • 84862190119 scopus 로고    scopus 로고
    • The bacterial CRISPR/Cas system as analog of the mammalian adaptive immune system
    • Epub ahead of print. doi:org/10.4161/rna.20177
    • Goren M, Yosef I, Edgar R, Qimron U. 1 May 2012. The bacterial CRISPR/Cas system as analog of the mammalian adaptive immune system. RNA Biol. [Epub ahead of print.] doi:org/10.4161/rna.20177.
    • (2012) RNA Biol.
    • Goren, M.1    Yosef, I.2    Edgar, R.3    Qimron, U.4
  • 7
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa I, Vergnaud G, Pourcel C. 2007. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35:52-57.
    • (2007) Nucleic Acids Res. , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 8
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa M, Goto S. 2000. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28:27-30.
    • (2000) Nucleic Acids Res. , vol.28
    • Kanehisa, M.1    Goto, S.2
  • 9
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    • doi:10.1186/1471-2105-7-474.
    • Kohany O, Gentles A, Hankus L, Jurka J. 2006. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7:474. doi:10.1186/1471-2105-7-474.
    • (2006) BMC Bioinformatics , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.2    Hankus, L.3    Jurka, J.4
  • 10
    • 34250665888 scopus 로고    scopus 로고
    • RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    • Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3100-3108
    • Lagesen, K.1
  • 11
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short Oligonucleotide Alignment Program
    • Li R, Li Y, Kristiansen K, Wang J. 2008. SOAP: Short Oligonucleotide Alignment Program. Bioinformatics 24:713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 12
    • 40749124938 scopus 로고    scopus 로고
    • Prophinder: a computational tool for prophage prediction in prokaryotic genomes
    • Lima-Mendez G, Van Helden J, Toussaint A, Leplae R. 2008. Prophinder: a computational tool for prophage prediction in prokaryotic genomes. Bioinformatics 24:863-865.
    • (2008) Bioinformatics , vol.24 , pp. 863-865
    • Lima-mendez, G.1    Van Helden, J.2    Toussaint, A.3    Leplae, R.4
  • 13
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 14
    • 84857917475 scopus 로고    scopus 로고
    • Diversity of culturable halophilic archaea isolated from Rambla Salada, Murcia (Spain)
    • Luque R, González-Domenech CM, Llamas I, Quesada E, Béjar V. 2012. Diversity of culturable halophilic archaea isolated from Rambla Salada, Murcia (Spain). Extremophiles 16:205-213.
    • (2012) Extremophiles , vol.16 , pp. 205-213
    • Luque, R.1    González-domenech, C.M.2    Llamas, I.3    Quesada, E.4    Béjar, V.5
  • 16
    • 84868344832 scopus 로고    scopus 로고
    • Deep sequencing analysis of phage libraries using Illumina platform
    • Epub ahead of print.
    • Matochko W, et al. 20 July 2012. Deep sequencing analysis of phage libraries using Illumina platform. Methods [Epub ahead of print.] http://dx.doi.org/10.1016/j.ymeth.2012.07.006.
    • (2012) Methods
    • Matochko, W.1
  • 17
    • 64149084027 scopus 로고    scopus 로고
    • An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope
    • Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH. 2009. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol. Microbiol. 72:307-319.
    • (2009) Mol. Microbiol , vol.72 , pp. 307-319
    • Pietilä, M.K.1    Roine, E.2    Paulin, L.3    Kalkkinen, N.4    Bamford, D.H.5
  • 18
    • 84863226687 scopus 로고    scopus 로고
    • Related haloarchaeal pleomorphic viruses contain different genome types
    • Sencilo A, Paulin L, Kellner S, Helm M, Roine E. 2012. Related haloarchaeal pleomorphic viruses contain different genome types. Nucleic Acids Res. 40:5523-5534.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 5523-5534
    • Sencilo, A.1    Paulin, L.2    Kellner, S.3    Helm, M.4    Roine, E.5
  • 19
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov RL, Galperin MY, Natale DA, Koonin EV. 2000. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 20
    • 0345188663 scopus 로고    scopus 로고
    • Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov.
    • Ventosa A, Gutiérrez MC, Kamekura M, Dyall-Smith ML. 1999. Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 49:131-136.
    • (1999) Int. J. Syst. Evol. Microbiol. , vol.49 , pp. 131-136
    • Ventosa, A.1    Gutiérrez, M.C.2    Kamekura, M.3    Dyall-smith, M.L.4


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