메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Combined miRNA and mRNA signature identifies key molecular players and pathways involved in Chikungunya virus infection in human cells

Author keywords

[No Author keywords available]

Indexed keywords

4 [4 (1,3 BENZODIOXOL 5 YL) 5 (2 PYRIDINYL) 1H IMIDAZOL 2 YL]BENZAMIDE; ANAPHASE PROMOTING COMPLEX SUBUNIT 3; ANAPHASE PROMOTING COMPLEX SUBUNIT 8; BIOLOGICAL MARKER; CHEMOKINE RECEPTOR CXCR4; HEAT SHOCK COGNATE PROTEIN 70; MESSENGER RNA; MICRORNA; MICRORNA 503; MICRORNA 638; MICRORNA 744; SMAD6 PROTEIN; SMALL NUCLEOLAR RNA; SMALL NUCLEOLAR RNA U3; SMALL NUCLEOLAR RNA U44; SMALL NUCLEOLAR RNA U76; SMALL NUCLEOLAR RNA U78; TRANSFORMING GROWTH FACTOR BETA; UNCLASSIFIED DRUG;

EID: 84896700755     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079886     Document Type: Article
Times cited : (41)

References (40)
  • 1
    • 77953552629 scopus 로고    scopus 로고
    • Biology and pathogenesis of chikungunya virus
    • Schwartz O, Albert ML (2010) Biology and pathogenesis of chikungunya virus. Nat Rev Microbiol 8: 491-500.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 491-500
    • Schwartz, O.1    Albert, M.L.2
  • 2
    • 39049129919 scopus 로고    scopus 로고
    • Two Chikungunya isolates from the outbreak of La Reunion (Indian Ocean) exhibit different patterns of infection in the mosquito, Aedes albopictus
    • Available: Accessed 21 March 2013
    • Vazeille M, Moutailler S, Coudrier D, Rousseaux C, Khun H, et al. (2007) Two Chikungunya isolates from the outbreak of La Reunion (Indian Ocean) exhibit different patterns of infection in the mosquito, Aedes albopictus. PloS One 2: e1168. Available: http://www.ncbi.nlm.nih.gov/pubmed/18000540. Accessed 21 March 2013.
    • (2007) PloS One , vol.2
    • Vazeille, M.1    Moutailler, S.2    Coudrier, D.3    Rousseaux, C.4    Khun, H.5
  • 3
    • 41549113841 scopus 로고    scopus 로고
    • Multidisciplinary Prospective Study of Mother-to-Child Chikungunya Virus Infections on the Island of La Réunion
    • Available: Accessed 6 March 2013
    • Barau G, Michault A, Bintner M, Randrianaivo H, Choker G, et al. (2008) Multidisciplinary Prospective Study of Mother-to-Child Chikungunya Virus Infections on the Island of La Réunion. PLoS Med 5: e60. Available: http://www.ncbi.nlm.nih.gov/pubmed/18351797. Accessed 6 March 2013.
    • (2008) PLoS Med , vol.5
    • Barau, G.1    Michault, A.2    Bintner, M.3    Randrianaivo, H.4    Choker, G.5
  • 4
    • 71949106106 scopus 로고    scopus 로고
    • Chikungunya virus takes centre stage in virally induced arthritis: Possible cellular and molecular mechanisms to pathogenesis
    • Jaffar-Bandjee MC, Das T, Hoarau JJ, Krejbich Trotot P, Denizot M, et al. (2009) Chikungunya virus takes centre stage in virally induced arthritis: possible cellular and molecular mechanisms to pathogenesis. Microbes Infect 11: 1206-1218.
    • (2009) Microbes Infect , vol.11 , pp. 1206-1218
    • Jaffar-Bandjee, M.C.1    Das, T.2    Hoarau, J.J.3    Krejbich Trotot, P.4    Denizot, M.5
  • 5
    • 77953600706 scopus 로고    scopus 로고
    • Persistent chronic inflammation and infection by Chikungunya arthritogenic alphavirus in spite of a robust host immune response
    • Hoarau JJ, JaffarBandjee MC, Krejbich Trotot P, Das T, Li-Pat-Yuen G, et al. (2010) Persistent chronic inflammation and infection by Chikungunya arthritogenic alphavirus in spite of a robust host immune response. J Immunol 184: 5914-5927.
    • (2010) J Immunol , vol.184 , pp. 5914-5927
    • Hoarau, J.J.1    JaffarBandjee, M.C.2    Krejbich Trotot, P.3    Das, T.4    Li-Pat-Yuen, G.5
  • 6
    • 34249075782 scopus 로고    scopus 로고
    • Outbreak of chikungunya on Reunion Island: Early clinical and laboratory features in 157 adult patients
    • Borgherini G, Poubeau P, Staikowsky F, Lory M, Le Moullec N, et al. (2007) Outbreak of chikungunya on Reunion Island: early clinical and laboratory features in 157 adult patients. Clin Infect Dis 44: 1401-1407.
    • (2007) Clin Infect Dis , vol.44 , pp. 1401-1407
    • Borgherini, G.1    Poubeau, P.2    Staikowsky, F.3    Lory, M.4    Le Moullec, N.5
  • 7
    • 42549152487 scopus 로고    scopus 로고
    • Clinical features and molecular diagnosis of Chikungunya fever from South India
    • Lakshmi V, Neeraja M, Subbalaxmi MVS, Parida MM, Dash PK, et al. (2008) Clinical features and molecular diagnosis of Chikungunya fever from South India. Clin Infect Dis 46: 1436-1442.
    • (2008) Clin Infect Dis , vol.46 , pp. 1436-1442
    • Lakshmi, V.1    Neeraja, M.2    Subbalaxmi, M.V.S.3    Parida, M.M.4    Dash, P.K.5
  • 8
    • 84863416212 scopus 로고    scopus 로고
    • Chikungunya Infection in India: Results of a Prospective Hospital Based Multi-Centric Study
    • Available: Accessed 8 March 2013
    • Ray P, Ratagiri VH, Kabra SK, Lodha R, Sharma S, et al. (2012) Chikungunya Infection in India: Results of a Prospective Hospital Based Multi-Centric Study. PLoS One 7: e30025. Available: http://www.ncbi.nlm.nih.gov/ pubmed/22363413. Accessed 8 March 2013.
    • (2012) PLoS One , vol.7
    • Ray, P.1    Ratagiri, V.H.2    Kabra, S.K.3    Lodha, R.4    Sharma, S.5
  • 10
    • 70449531378 scopus 로고    scopus 로고
    • The immunobiology of viral arthritides
    • Suhrbier A, Mahalingam S (2009) The immunobiology of viral arthritides. Pharmacol Ther 124: 301-308.
    • (2009) Pharmacol Ther , vol.124 , pp. 301-308
    • Suhrbier, A.1    Mahalingam, S.2
  • 11
    • 32944462309 scopus 로고    scopus 로고
    • Anti-immunology: Evasion of the host immune system by bacterial and viral pathogens
    • Finlay BB, McFadden G (2006) Anti-immunology: evasion of the host immune system by bacterial and viral pathogens. Cell 124: 767-782.
    • (2006) Cell , vol.124 , pp. 767-782
    • Finlay, B.B.1    McFadden, G.2
  • 12
    • 71949131286 scopus 로고    scopus 로고
    • Immuno-biology of Chikungunya and implications for disease intervention
    • Kam YW, Ong EKS, Rénia L, Tong JC, Ng LF. (2009) Immuno-biology of Chikungunya and implications for disease intervention. Microbes Infect 11: 1186-1196.
    • (2009) Microbes Infect , vol.11 , pp. 1186-1196
    • Kam, Y.W.1    Ong, E.K.S.2    Rénia, L.3    Tong, J.C.4    Ng, L.F.5
  • 13
    • 80052418170 scopus 로고    scopus 로고
    • Inflammatory cytokine expression is associated with chikungunya virus resolution and symptom severity
    • Available: Accessed 1 April 2013
    • Kelvin AA, Banner D, Silvi G, Moro ML, Spataro N, et al. (2011) Inflammatory cytokine expression is associated with chikungunya virus resolution and symptom severity. PLoS Negl Trop Dis 5: e1279. Available: http://www.ncbi.nlm.nih.gov/pubmed/21858242. Accessed 1 April 2013.
    • (2011) PLoS Negl Trop Dis , vol.5
    • Kelvin, A.A.1    Banner, D.2    Silvi, G.3    Moro, M.L.4    Spataro, N.5
  • 14
    • 58749117033 scopus 로고    scopus 로고
    • IL-1beta, IL-6, and RANTES as biomarkers of Chikungunya severity
    • Available: Accessed 2 March 2013
    • Ng LF, Chow A, Sun YJ, Kwek DJ, Lim PL, et al. (2009) IL-1beta, IL-6, and RANTES as biomarkers of Chikungunya severity. PloS One 4: e4261. Available: http://www.ncbi.nlm.nih.gov/pubmed/19156204. Accessed 2 March 2013.
    • (2009) PloS One , vol.4
    • Ng, L.F.1    Chow, A.2    Sun, Y.J.3    Kwek, D.J.4    Lim, P.L.5
  • 15
    • 79251574614 scopus 로고    scopus 로고
    • Chikungunya virus mobilizes the apoptotic machinery to invade host cell defenses
    • Krejbich-Trotot P, Denizot M, Hoarau JJ, Jaffar-Bandjee MC, Das T, et al. (2011) Chikungunya virus mobilizes the apoptotic machinery to invade host cell defenses. FASEB J 25: 314-325.
    • (2011) FASEB J , vol.25 , pp. 314-325
    • Krejbich-Trotot, P.1    Denizot, M.2    Hoarau, J.J.3    Jaffar-Bandjee, M.C.4    Das, T.5
  • 16
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, Biogenesis, Mechanism and Function Genomics
    • Bartel DP, Lee R, Feinbaum R (2004) MicroRNAs: Genomics, Biogenesis, Mechanism and Function Genomics. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1    Lee, R.2    Feinbaum, R.3
  • 17
    • 41549110185 scopus 로고    scopus 로고
    • Control of protein synthesis and mRNA degradation by microRNAs
    • Liu J (2008) Control of protein synthesis and mRNA degradation by microRNAs. Curr Opin Cell Biol 20: 214-221.
    • (2008) Curr Opin Cell Biol , vol.20 , pp. 214-221
    • Liu, J.1
  • 18
    • 58149186499 scopus 로고    scopus 로고
    • miRecords: An integrated resource for microRNA-target interactions
    • Xiao F, Zuo Z, Cai G, Kang S, Gao X, et al. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-110.
    • (2009) Nucleic Acids Res , vol.37
    • Xiao, F.1    Zuo, Z.2    Cai, G.3    Kang, S.4    Gao, X.5
  • 19
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 21
    • 33751009398 scopus 로고    scopus 로고
    • snoSeeker: An advanced computational package for screening of guide and orphan snoRNA genes in the human genome
    • Yang JH, Zhang XC, Huang ZP, Zhou H, Huang MB, et al. (2006) snoSeeker: An advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res 34: 5112-5123.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5112-5123
    • Yang, J.H.1    Zhang, X.C.2    Huang, Z.P.3    Zhou, H.4    Huang, M.B.5
  • 22
    • 34347342849 scopus 로고    scopus 로고
    • Characterization of reemerging chikungunya virus
    • Available: Accessed 9 March 2013
    • Sourisseau M, Schilte C, Casartelli N, Trouillet C, Guivel-Benhassine F, et al. (2007) Characterization of reemerging chikungunya virus. PLoS Pathog 3: e89 Available: http://www.ncbi.nlm.nih.gov/pubmed/17604450. Accessed 9 March 2013.
    • (2007) PLoS Pathog , vol.3
    • Sourisseau, M.1    Schilte, C.2    Casartelli, N.3    Trouillet, C.4    Guivel-Benhassine, F.5
  • 23
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 25
    • 51549115859 scopus 로고    scopus 로고
    • The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition
    • Cloonan N, Brown MK, Steptoe AL, Wani S, Chan WL, et al. (2008) The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition. Genome Biol 9: R127.
    • (2008) Genome Biol , vol.9
    • Cloonan, N.1    Brown, M.K.2    Steptoe, A.L.3    Wani, S.4    Chan, W.L.5
  • 27
    • 67649217148 scopus 로고    scopus 로고
    • Upregulation of miR-23a-27a-24-2 cluster induces caspase-dependent and -independent apoptosis in human embryonic kidney cells
    • Available: Accessed 5 April 2013
    • Chhabra R, Adlakha YK, Hariharan M, Scaria V, Saini N (2009) Upregulation of miR-23a-27a-24-2 cluster induces caspase-dependent and -independent apoptosis in human embryonic kidney cells. PloS One 4: e5848. Available: http://www.ncbi.nlm.nih.gov/pubmed/19513126. Accessed 5 April 2013.
    • (2009) PloS One , vol.4
    • Chhabra, R.1    Adlakha, Y.K.2    Hariharan, M.3    Scaria, V.4    Saini, N.5
  • 28
    • 47049125858 scopus 로고    scopus 로고
    • Upregulation of miR-23a approximately 27a approximately 24 decreases transforming growth factor-beta-induced tumor-suppressive activities in human hepatocellular carcinoma cells
    • Huang S, He X, Ding J, Liang L, Zhao Y, et al. (2008) Upregulation of miR-23a approximately 27a approximately 24 decreases transforming growth factor-beta-induced tumor-suppressive activities in human hepatocellular carcinoma cells. Int J of Cancer 123: 972-978.
    • (2008) Int J of Cancer , vol.123 , pp. 972-978
    • Huang, S.1    He, X.2    Ding, J.3    Liang, L.4    Zhao, Y.5
  • 30
    • 54249158400 scopus 로고    scopus 로고
    • Emerging role of miR-106b-25/miR-17-92 clusters in the control of transforming growth factor beta signaling
    • Petrocca F, Vecchione A, Croce CM (2008) Emerging role of miR-106b-25/miR-17-92 clusters in the control of transforming growth factor beta signaling. Cancer Res 68: 8191-8194.
    • (2008) Cancer Res , vol.68 , pp. 8191-8194
    • Petrocca, F.1    Vecchione, A.2    Croce, C.M.3
  • 31
    • 79551499254 scopus 로고    scopus 로고
    • Human box C/D snoRNAs with miRNA like functions: Expanding the range of regulatory RNAs
    • Brameier M, Herwig A, Reinhardt R, Walter L, Gruber J (2011) Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. Nucleic Acids Res 39: 675-686.
    • (2011) Nucleic Acids Res , vol.39 , pp. 675-686
    • Brameier, M.1    Herwig, A.2    Reinhardt, R.3    Walter, L.4    Gruber, J.5
  • 32
    • 57149094023 scopus 로고    scopus 로고
    • snoRNA, a novel precursor of microRNA in Giardia lamblia
    • Available: Accessed 5 March 2013
    • Saraiya AA, Wang CC (2008) snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog 4: e1000224. Available: http://www.ncbi.nlm.nih. gov/pubmed/19043559 Accessed 5 March 2013.
    • (2008) PLoS Pathog , vol.4
    • Saraiya, A.A.1    Wang, C.C.2
  • 33
    • 70049106406 scopus 로고    scopus 로고
    • Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome
    • Available: Accessed 5 April 2013
    • Hutzinger R, Feederle R, Mrazek J, Schiefermeier N, Balwierz PJ, et al. (2009) Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome. PLoS Pathog 5: e1000547. Available: http://www.ncbi.nlm.nih.gov/ pubmed/19680535. Accessed 5 April 2013.
    • (2009) PLoS Pathog , vol.5
    • Hutzinger, R.1    Feederle, R.2    Mrazek, J.3    Schiefermeier, N.4    Balwierz, P.J.5
  • 34
    • 0031756336 scopus 로고    scopus 로고
    • Classification of gas5 as a Multi-Small-Nucleolar-RNA (snoRNA) Host Gene and a Member of the 59′ -Terminal Oligopyrimidine Gene Family Reveals Common Features of snoRNA host genes
    • Smith CM, Steitz JA (1998) Classification of gas5 as a Multi-Small-Nucleolar-RNA (snoRNA) Host Gene and a Member of the 59′ -Terminal Oligopyrimidine Gene Family Reveals Common Features of snoRNA host genes. Mol Cell Biol 18: 6897-6909.
    • (1998) Mol Cell Biol , vol.18 , pp. 6897-6909
    • Smith, C.M.1    Steitz, J.A.2
  • 35
  • 36
    • 44349191455 scopus 로고    scopus 로고
    • Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster
    • Sahoo T, del Gaudio D, German JR, Shinawi M, Peters SU, et al. (2008) Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster. Nat Genet 40: 719-721.
    • (2008) Nat Genet , vol.40 , pp. 719-721
    • Sahoo, T.1    Del Gaudio, D.2    German, J.R.3    Shinawi, M.4    Peters, S.U.5
  • 37
    • 79251574614 scopus 로고    scopus 로고
    • Chikungunya virus mobilizes the apoptotic machinery to invade host cell defenses
    • Krejbich-Trotot P, Denizot M, Hoarau JJ, Jaffar-Bandjee MC, Das T, et al. (2011) Chikungunya virus mobilizes the apoptotic machinery to invade host cell defenses. FASEB J 25: 314-325.
    • (2011) FASEB J , vol.25 , pp. 314-325
    • Krejbich-Trotot, P.1    Denizot, M.2    Hoarau, J.J.3    Jaffar-Bandjee, M.C.4    Das, T.5
  • 38
    • 0032519925 scopus 로고    scopus 로고
    • Macrophages that have ingested apoptotic cells in vitro inhibitproinflammatory cytokine production through autocrine/paracrine mechanisms involving TGF-β, PGE2, and PAF
    • Fadok VA, Bratton DL, Konowal A, Freed PW, Westcott JY, et al. (1998) Macrophages that have ingested apoptotic cells in vitro inhibitproinflammatory cytokine production through autocrine/paracrine mechanisms involving TGF-β, PGE2, and PAF. J Clin Invest 101: 890-898.
    • (1998) J Clin Invest , vol.101 , pp. 890-898
    • Fadok, V.A.1    Bratton, D.L.2    Konowal, A.3    Freed, P.W.4    Westcott, J.Y.5
  • 39
    • 0742325043 scopus 로고    scopus 로고
    • The CCR5 and CXCR4 Coreceptors - Central to Understanding the Transmission and Pathogenesis of Human Immunodeficiency Virus Type 1 Infection
    • Moore JP, Kitchen SG, Pugach P, Zack JA (2004) The CCR5 and CXCR4 Coreceptors - Central to Understanding the Transmission and Pathogenesis of Human Immunodeficiency Virus Type 1 Infection. AIDS Res Hum Retroviruses 20: 111-126.
    • (2004) AIDS Res Hum Retroviruses , vol.20 , pp. 111-126
    • Moore, J.P.1    Kitchen, S.G.2    Pugach, P.3    Zack, J.A.4
  • 40
    • 74249112787 scopus 로고    scopus 로고
    • Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection
    • Lanford RE, Hildebrandt-Eriksen ES, Petri A, Persson R, Lindow M, et al. (2010) Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection. Science 327: 198-201.
    • (2010) Science , vol.327 , pp. 198-201
    • Lanford, R.E.1    Hildebrandt-Eriksen, E.S.2    Petri, A.3    Persson, R.4    Lindow, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.