-
1
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
-
2
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Rev. Genet. 11: 204-220.
-
(2010)
Nature Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
3
-
-
84875741680
-
The arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach A, Kim MY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, et al. (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153: 193-205.
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
Coleman-Derr, D.4
Eshed-Williams, L.5
-
4
-
-
84860355893
-
Regulation of biological accuracy, precision, and memory by plant chromatin organization
-
Huff JT, Zilberman D (2012) Regulation of biological accuracy, precision, and memory by plant chromatin organization. Curr. Opin. Genet. Dev. 22: 132-138.
-
(2012)
Curr. Opin. Genet. Dev.
, vol.22
, pp. 132-138
-
-
Huff, J.T.1
Zilberman, D.2
-
5
-
-
33745454548
-
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
-
DOI 10.1105/tpc.106.041400
-
Ebbs ML, Bender J (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176. (Pubitemid 43956123)
-
(2006)
Plant Cell
, vol.18
, Issue.5
, pp. 1166-1176
-
-
Ebbs, M.L.1
Bender, J.2
-
6
-
-
84866981889
-
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
-
Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, et al. (2012) Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell 151: 167-180.
-
(2012)
Cell
, vol.151
, pp. 167-180
-
-
Du, J.1
Zhong, X.2
Bernatavichute, Y.V.3
Stroud, H.4
Feng, S.5
-
7
-
-
33846931283
-
The SRA Methyl-Cytosine-Binding Domain Links DNA and Histone Methylation
-
DOI 10.1016/j.cub.2007.01.009, PII S096098220700810X
-
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, et al. (2007) The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. : CB 17: 379-384. (Pubitemid 46241885)
-
(2007)
Current Biology
, vol.17
, Issue.4
, pp. 379-384
-
-
Johnson, L.M.1
Bostick, M.2
Zhang, X.3
Kraft, E.4
Henderson, I.5
Callis, J.6
Jacobsen, S.E.7
-
8
-
-
77958510636
-
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
-
Inagaki S, Miura-Kamio A, Nakamura Y, Lu F, Cui X, et al. (2010) Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome. EMBO J. 129: 3496-3506.
-
(2010)
EMBO J.
, vol.129
, pp. 3496-3506
-
-
Inagaki, S.1
Miura-Kamio, A.2
Nakamura, Y.3
Lu, F.4
Cui, X.5
-
9
-
-
65349171662
-
An arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
-
Miura A, Nakamura M, Inagaki S, Kobayashi A, Saze H, et al. (2009) An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J. 28: 1078-1086.
-
(2009)
EMBO J.
, vol.28
, pp. 1078-1086
-
-
Miura, A.1
Nakamura, M.2
Inagaki, S.3
Kobayashi, A.4
Saze, H.5
-
10
-
-
38549116060
-
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
-
DOI 10.1126/science.1150987
-
Saze H, Shiraishi A, Miura A, Kakutani T (2008) Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science 319: 462-465. (Pubitemid 351160579)
-
(2008)
Science
, vol.319
, Issue.5862
, pp. 462-465
-
-
Saze, H.1
Shiraishi, A.2
Miura, A.3
Kakutani, T.4
-
11
-
-
84867555058
-
IBM1, a JmjC domaincontaining histone demethylase, is involved in the regulation of RNA-directed DNA methylation through the epigenetic control of RDR2 and DCL3 expression in Arabidopsis
-
Fan D, Dai Y, Wang X, Wang Z, He H, et al. (2012) IBM1, a JmjC domaincontaining histone demethylase, is involved in the regulation of RNA-directed DNA methylation through the epigenetic control of RDR2 and DCL3 expression in Arabidopsis. Nucl. Acids Res. 40: 8905-8916.
-
(2012)
Nucl. Acids Res.
, vol.40
, pp. 8905-8916
-
-
Fan, D.1
Dai, Y.2
Wang, X.3
Wang, Z.4
He, H.5
-
12
-
-
77953176569
-
Gene transposition causing natural variation for growth in Arabidopsis thaliana
-
Vlad D, Rappaport F, Simon M, Loudet O (2010) Gene transposition causing natural variation for growth in Arabidopsis thaliana. PLoS Genet. 6: e1000945.
-
(2010)
PLoS Genet.
, vol.6
-
-
Vlad, D.1
Rappaport, F.2
Simon, M.3
Loudet, O.4
-
13
-
-
84959057192
-
EUGENE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence
-
Computational Biology
-
Schiex T, Moisan A, Rouzé P (2001) EuGene: An Eucaryotic Gene Finder that combines several sources of evidence. Comp. Biol. LNCS 2066: LNCS 2066. pp. 111-125. (Pubitemid 33298834)
-
(2001)
Lecture Notes in Computer Science
, Issue.2066
, pp. 111-125
-
-
Schiex, T.1
Moisan, A.2
Rouze, P.3
-
14
-
-
0037354734
-
Arabidopsis MET1 cytosine methyltransferase mutants
-
Kankel MW, Ramsey DE, Stokes TL, Flowers SK, Haag JR, et al. (2003) Arabidopsis MET1 cytosine methyltransferase mutants. Genetics 163: 1109-1122. (Pubitemid 36417951)
-
(2003)
Genetics
, vol.163
, Issue.3
, pp. 1109-1122
-
-
Kankel, M.W.1
Ramsey, D.E.2
Stokes, T.L.3
Flowers, S.K.4
Haag, J.R.5
Jeddeloh, J.A.6
Riddle, N.C.7
Verbsky, M.L.8
Richards, E.J.9
-
15
-
-
0027303886
-
Arabidopsis thaliana DNA methylation mutants
-
Vongs A, Kakutani T, Martienssen RA, Richards EJ (1993) Arabidopsis thaliana DNA methylation mutants. Science 260: 1926-1928. (Pubitemid 23258270)
-
(1993)
Science
, vol.260
, Issue.5116
, pp. 1926-1928
-
-
Vongs, A.1
Kakutani, T.2
Martienssen, R.A.3
Richards, E.J.4
-
16
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE (2013) Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 152: 352-364.
-
(2013)
Cell
, vol.152
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
17
-
-
84863855972
-
DNA methylation in an intron of the IBM1 histone demethylase gene stabilizes chromatin modification patterns
-
Rigal M, Kevei Z, Pélissier T, Mathieu O (2012) DNA methylation in an intron of the IBM1 histone demethylase gene stabilizes chromatin modification patterns. EMBO J. 31(13): 2981-93.
-
(2012)
EMBO J.
, vol.31
, Issue.13
, pp. 2981-2993
-
-
Rigal, M.1
Kevei, Z.2
Pélissier, T.3
Mathieu, O.4
-
18
-
-
84883130171
-
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin
-
Saze H, Kitayama J, Takashima K, Miura S, Harukawa Y, et al. (2013) Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin. Nat Commun. 4: 2301.
-
(2013)
Nat Commun.
, vol.4
, pp. 2301
-
-
Saze, H.1
Kitayama, J.2
Takashima, K.3
Miura, S.4
Harukawa, Y.5
-
19
-
-
84884335747
-
RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1
-
Wang X, Duan CG, Tang K, Wang B, Zhang H, et al. (2013) RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1. Proc Natl Acad Sci U S A. 110(38): 15467-72.
-
(2013)
Proc Natl Acad Sci U S A.
, vol.110
, Issue.38
, pp. 15467-15472
-
-
Wang, X.1
Duan, C.G.2
Tang, K.3
Wang, B.4
Zhang, H.5
-
20
-
-
84855272118
-
HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis
-
Liu X, Yu CW, Duan J, Luo M, Wang K, et al. (2012) HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis. Plant Physiol. 158: 119-129.
-
(2012)
Plant Physiol.
, vol.158
, pp. 119-129
-
-
Liu, X.1
Yu, C.W.2
Duan, J.3
Luo, M.4
Wang, K.5
-
21
-
-
84862818911
-
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome
-
Kuo AJ, Song J, Cheung P, Ishibe-Murakami S, Yamazoe S, et al. (2012) The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature 484: 115-119.
-
(2012)
Nature
, vol.484
, pp. 115-119
-
-
Kuo, A.J.1
Song, J.2
Cheung, P.3
Ishibe-Murakami, S.4
Yamazoe, S.5
-
22
-
-
84861527372
-
RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1
-
Sasaki T, Kobayashi A, Saze H, Kakutani T (2012) RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1. Plant J. 70: 750-758.
-
(2012)
Plant J.
, vol.70
, pp. 750-758
-
-
Sasaki, T.1
Kobayashi, A.2
Saze, H.3
Kakutani, T.4
-
23
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones PA (2012) Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nature Rev. Genet. 13: 484-492.
-
(2012)
Nature Rev. Genet.
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
24
-
-
15244350750
-
Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family
-
DOI 10.1007/s00122-004-1900-9
-
Loudet O, Gaudon V, Trubuil A, Daniel-Vedele F (2005) Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family. TAG 110: 742-753. (Pubitemid 40383391)
-
(2005)
Theoretical and Applied Genetics
, vol.110
, Issue.4
, pp. 742-753
-
-
Loudet, O.1
Gaudon, V.2
Trubuil, A.3
Daniel-Vedele, F.4
-
25
-
-
45849092254
-
Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers
-
Simon M, Loudet O, Durand S, Berard A, Brunel D, et al. (2008) Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers. Genetics 178: 2253-2264.
-
(2008)
Genetics
, vol.178
, pp. 2253-2264
-
-
Simon, M.1
Loudet, O.2
Durand, S.3
Berard, A.4
Brunel, D.5
-
26
-
-
37849043954
-
ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis
-
Agorio A, Vera P (2007) ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis. Plant Cell 19: 3778-3790.
-
(2007)
Plant Cell
, vol.19
, pp. 3778-3790
-
-
Agorio, A.1
Vera, P.2
-
27
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
DOI 10.1126/science.1059745
-
Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, et al. (2001) Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 292: 2077-2080. (Pubitemid 32691574)
-
(2001)
Science
, vol.292
, Issue.5524
, pp. 2077-2080
-
-
Lindroth, A.M.1
Cao, X.2
Jackson, J.P.3
Zilberman, D.4
McCallum, C.M.5
Henikoff, S.6
Jacobsen, S.E.7
-
28
-
-
23844494476
-
Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis
-
DOI 10.1038/sj.emboj.7600743
-
Mathieu O, Probst AV, Paszkowski J (2005) Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis. EMBO J. 124: 2783-2791. (Pubitemid 41170027)
-
(2005)
EMBO Journal
, vol.24
, Issue.15
, pp. 2783-2791
-
-
Mathieu, O.1
Probst, A.V.2
Paszkowski, J.3
-
29
-
-
79961172475
-
A Polycomb-based switch underlying quantitative epigenetic memory
-
Angel A, Song J, Dean C, Howard M (2011) A Polycomb-based switch underlying quantitative epigenetic memory. Nature 476: 105-108.
-
(2011)
Nature
, vol.476
, pp. 105-108
-
-
Angel, A.1
Song, J.2
Dean, C.3
Howard, M.4
|