-
1
-
-
69949158093
-
What has natural variation taught us about plant development, physiology, and adaptation?
-
Alonso-Blanco C, Aarts MG, Bentsink L, Keurentjes JJ, Reymond M, et al. (2009) What has natural variation taught us about plant development, physiology, and adaptation? Plant Cell 21: 1877-1896.
-
(2009)
Plant Cell
, vol.21
, pp. 1877-1896
-
-
Alonso-Blanco, C.1
Aarts, M.G.2
Bentsink, L.3
Keurentjes, J.J.4
Reymond, M.5
-
2
-
-
57149099394
-
Sequencing of natural strains of Arabidopsis thaliana with short reads
-
Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, et al. (2008) Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res 18: 2024-2033.
-
(2008)
Genome Res
, vol.18
, pp. 2024-2033
-
-
Ossowski, S.1
Schneeberger, K.2
Clark, R.M.3
Lanz, C.4
Warthmann, N.5
-
3
-
-
2542487363
-
Genome size variation among accessions of Arabidopsis thaliana
-
Schmuths H, Meister A, Horres R, Bachmann K (2004) Genome size variation among accessions of Arabidopsis thaliana. Ann Bot 93: 317-321.
-
(2004)
Ann Bot
, vol.93
, pp. 317-321
-
-
Schmuths, H.1
Meister, A.2
Horres, R.3
Bachmann, K.4
-
4
-
-
0037440712
-
Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome
-
Ziolkowski PA, Blanc G, Sadowski J (2003) Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome. Nucleic Acids Res 31: 1339-1350.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1339-1350
-
-
Ziolkowski, P.A.1
Blanc, G.2
Sadowski, J.3
-
5
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, et al. (2007) Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 317: 338-342.
-
(2007)
Science
, vol.317
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
-
7
-
-
0033867676
-
Analysis of intrachromosomal duplications in yeast Saccharomyces cerevisiae: A possible model for their origin
-
Achaz G, Coissac E, Viari A, Netter P (2000) Analysis of intrachromosomal duplications in yeast Saccharomyces cerevisiae: a possible model for their origin. Mol Biol Evol 17: 1268-1275.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1268-1275
-
-
Achaz, G.1
Coissac, E.2
Viari, A.3
Netter, P.4
-
8
-
-
0034603206
-
Integrated cytogenetic map of chromosome arm 4S of A. thaliana: Structural organization of heterochromatic knob and centromere region
-
Fransz PF, Armstrong S, de Jong JH, Parnell LD, van Drunen C, et al. (2000) Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region. Cell 100: 367-376.
-
(2000)
Cell
, vol.100
, pp. 367-376
-
-
Fransz, P.F.1
Armstrong, S.2
de Jong, J.H.3
Parnell, L.D.4
van Drunen, C.5
-
9
-
-
0344287498
-
Non-random association of transposable elements with duplicated genomic blocks in Arabidopsis thaliana
-
Hughes AL, Friedman R, Ekollu V, Rose JR (2003) Non-random association of transposable elements with duplicated genomic blocks in Arabidopsis thaliana. Mol Phylogenet Evol 29: 410-416.
-
(2003)
Mol Phylogenet Evol
, vol.29
, pp. 410-416
-
-
Hughes, A.L.1
Friedman, R.2
Ekollu, V.3
Rose, J.R.4
-
10
-
-
67651053274
-
Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae
-
Faddah DA, Ganko EW, McCoach C, Pickrell JK, Hanlon SE, et al. (2009) Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae. PLoS Genet 5: e1000502. doi:10.1371/journal.pgen.1000502.
-
(2009)
PLoS Genet
, vol.e1000502
, pp. 5
-
-
Faddah, D.A.1
Ganko, E.W.2
McCoach, C.3
Pickrell, J.K.4
Hanlon, S.E.5
-
11
-
-
35348988679
-
Pairedend mapping reveals extensive structural variation in the human genome
-
Korbel JO, Urban AE, Affourtit JP, Godwin B, Grubert F, et al. (2007) Pairedend mapping reveals extensive structural variation in the human genome. Science 318: 420-426.
-
(2007)
Science
, vol.318
, pp. 420-426
-
-
Korbel, J.O.1
Urban, A.E.2
Affourtit, J.P.3
Godwin, B.4
Grubert, F.5
-
12
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, et al. (2004) Detection of large-scale variation in the human genome. Nat Genet 36: 949-951.
-
(2004)
Nat Genet
, vol.36
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
-
13
-
-
77950460950
-
Origins and functional impact of copy number variation in the human genome
-
Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, et al. (2009) Origins and functional impact of copy number variation in the human genome. Nature 7: 7.
-
(2009)
Nature
, vol.7
, pp. 7
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
-
14
-
-
54049135383
-
Contemplating effects of genomic structural variation
-
Buchanan JA, Scherer SW (2008) Contemplating effects of genomic structural variation. Genet Med 10: 639-647.
-
(2008)
Genet Med
, vol.10
, pp. 639-647
-
-
Buchanan, J.A.1
Scherer, S.W.2
-
15
-
-
0037270015
-
The evolutionary demography of duplicate genes
-
Lynch M, Conery JS (2003) The evolutionary demography of duplicate genes. J Struct Funct Genomics 3: 35-44.
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 35-44
-
-
Lynch, M.1
Conery, J.S.2
-
16
-
-
59149093200
-
Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana
-
Bikard D, Patel D, Le Metté C, Giorgi V, Camilleri C, et al. (2009) Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science 323: 623-626.
-
(2009)
Science
, vol.323
, pp. 623-626
-
-
Bikard, D.1
Patel, D.2
le Metté, C.3
Giorgi, V.4
Camilleri, C.5
-
18
-
-
33646851736
-
Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease
-
Staal J, Kaliff M, Bohman S, Dixelius C (2006) Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease. Plant J 46: 218-230.
-
(2006)
Plant J
, vol.46
, pp. 218-230
-
-
Staal, J.1
Kaliff, M.2
Bohman, S.3
Dixelius, C.4
-
19
-
-
34247897150
-
Development of a near-isogenic line population of Arabidopsis thaliana and comparison of mapping power with a recombinant inbred line population
-
Keurentjes JJ, Bentsink L, Alonso-Blanco C, Hanhart CJ, Blankestijn-De Vries H, et al. (2007) Development of a near-isogenic line population of Arabidopsis thaliana and comparison of mapping power with a recombinant inbred line population. Genetics 175: 891-905.
-
(2007)
Genetics
, vol.175
, pp. 891-905
-
-
Keurentjes, J.J.1
Bentsink, L.2
Alonso-Blanco, C.3
Hanhart, C.J.4
de Blankestijn-vries, H.5
-
20
-
-
37249074279
-
Genetic basis of heterosis for growth-related traits in Arabidopsis investigated by testcross progenies of near-isogenic lines reveals a significant role of epistasis
-
Melchinger AE, Piepho HP, Utz HF, Muminovic J, Wegenast T, et al. (2007) Genetic basis of heterosis for growth-related traits in Arabidopsis investigated by testcross progenies of near-isogenic lines reveals a significant role of epistasis. Genetics 177: 1827-1837.
-
(2007)
Genetics
, vol.177
, pp. 1827-1837
-
-
Melchinger, A.E.1
Piepho, H.P.2
Utz, H.F.3
Muminovic, J.4
Wegenast, T.5
-
21
-
-
18344382775
-
Epistasis and balanced polymorphism influencing complex trait variation
-
Kroymann J, Mitchell-Olds T (2005) Epistasis and balanced polymorphism influencing complex trait variation. Nature 435: 95-98.
-
(2005)
Nature
, vol.435
, pp. 95-98
-
-
Kroymann, J.1
Mitchell-Olds, T.2
-
22
-
-
68249140383
-
The 1001 genomes project for Arabidopsis thaliana
-
Weigel D, Mott R (2009) The 1001 genomes project for Arabidopsis thaliana. Genome Biol 10: 107.
-
(2009)
Genome Biol
, vol.10
, pp. 107
-
-
Weigel, D.1
Mott, R.2
-
23
-
-
45849092254
-
QTL mapping in five new large RIL populations of Arabidopsis thaliana genotyped with consensus SNP markers
-
Simon M, Loudet O, Durand S, Bérard A, Brunel D, et al. (2008) QTL mapping in five new large RIL populations of Arabidopsis thaliana genotyped with consensus SNP markers. Genetics 178: 2253-2264.
-
(2008)
Genetics
, vol.178
, pp. 2253-2264
-
-
Simon, M.1
Loudet, O.2
Durand, S.3
Bérard, A.4
Brunel, D.5
-
24
-
-
15244350750
-
Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family
-
Loudet O, Gaudon V, Trubuil A, Daniel-Vedele F (2005) Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family. Theor Appl Genet 110: 742-753.
-
(2005)
Theor Appl Genet
, vol.110
, pp. 742-753
-
-
Loudet, O.1
Gaudon, V.2
Trubuil, A.3
Daniel-Vedele, F.4
-
25
-
-
0030832776
-
Heterogeneous inbred family (HIF) analysis: A method for developing near-isogenic lines that differ at quantitative trait loci
-
Tuinstra MR, Ejeta G, Goldsbrough PB (1997) Heterogeneous inbred family (HIF) analysis: a method for developing near-isogenic lines that differ at quantitative trait loci. Theor Appl Genet 95: 1005-1011.
-
(1997)
Theor Appl Genet
, vol.95
, pp. 1005-1011
-
-
Tuinstra, M.R.1
Ejeta, G.2
Goldsbrough, P.B.3
-
26
-
-
55949116196
-
A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana
-
Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, et al. (2008) A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci USA 105: 17193-17198.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17193-17198
-
-
Loudet, O.1
Michael, T.P.2
Burger, B.T.3
le Metté, C.4
Mockler, T.C.5
-
27
-
-
44349099751
-
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome
-
doi:10.1371/journal.pone.0001994
-
Zybailov B, Rutschow H, Friso G, Rudella A, Emanuelsson O, et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 3: e1994. doi:10.1371/journal.pone.0001994.
-
(2008)
PLoS ONE
, vol.3
-
-
Zybailov, B.1
Rutschow, H.2
Friso, G.3
Rudella, A.4
Emanuelsson, O.5
-
28
-
-
11144358498
-
Nested core collections maximizing genetic diversity in Arabidopsis thaliana
-
McKhann HI, Camilleri C, Berard A, Bataillon T, David JL, et al. (2004) Nested core collections maximizing genetic diversity in Arabidopsis thaliana. Plant J 38: 193-202.
-
(2004)
Plant J
, vol.38
, pp. 193-202
-
-
McKhann, H.I.1
Camilleri, C.2
Berard, A.3
Bataillon, T.4
David, J.L.5
-
29
-
-
67650337470
-
Duplication, selection and gene conversion in a Drosophila mojavensis female reproductive protein family
-
Kelleher ES, Markow TA (2009) Duplication, selection and gene conversion in a Drosophila mojavensis female reproductive protein family. Genetics 181: 1451-1465.
-
(2009)
Genetics
, vol.181
, pp. 1451-1465
-
-
Kelleher, E.S.1
Markow, T.A.2
-
30
-
-
33645894460
-
Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: Possible causes and consequences for the distribution of linkage disequilibrium
-
Ostrowski MF, David J, Santoni S, McKhann H, Reboud X, et al. (2006) Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: possible causes and consequences for the distribution of linkage disequilibrium. Mol Ecol 15: 1507-1517.
-
(2006)
Mol Ecol
, vol.15
, pp. 1507-1517
-
-
Ostrowski, M.F.1
David, J.2
Santoni, S.3
McKhann, H.4
Reboud, X.5
-
31
-
-
0347364640
-
The early stages of duplicate gene evolution
-
Moore RC, Purugganan MD (2003) The early stages of duplicate gene evolution. Proc Natl Acad Sci USA 100: 15682-15687.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15682-15687
-
-
Moore, R.C.1
Purugganan, M.D.2
-
32
-
-
0033804889
-
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
-
Koch MA, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol 17: 1483-1498.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1483-1498
-
-
Koch, M.A.1
Haubold, B.2
Mitchell-Olds, T.3
-
33
-
-
0034522525
-
Genetic isolation by distance in Arabidopsis thaliana: Biogeography and post-glacial colonization of Europe
-
Sharbel TF, Haubold B, Mitchell-Olds T (2000) Genetic isolation by distance in Arabidopsis thaliana: biogeography and post-glacial colonization of Europe. Mol Ecol 9: 2109-2118.
-
(2000)
Mol Ecol
, vol.9
, pp. 2109-2118
-
-
Sharbel, T.F.1
Haubold, B.2
Mitchell-Olds, T.3
-
34
-
-
17444402038
-
A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism
-
Schmid KJ, Ramos-Onsins S, Ringys-Beckstein H, Weisshaar B, Mitchell-Olds T (2005) A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics 169: 1601-1615.
-
(2005)
Genetics
, vol.169
, pp. 1601-1615
-
-
Schmid, K.J.1
Ramos-Onsins, S.2
Ringys-Beckstein, H.3
Weisshaar, B.4
Mitchell-Olds, T.5
-
35
-
-
22744434580
-
The pattern of polymorphism in Arabidopsis thaliana
-
Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, et al. (2005) The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol 3: e196. doi:10.1371/journal.pbio.0030196.
-
(2005)
PLoS Biol
, vol.3
-
-
Nordborg, M.1
Hu, T.T.2
Ishino, Y.3
Jhaveri, J.4
Toomajian, C.5
-
36
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
37
-
-
62449171755
-
Arabidopsis thaliana genes encoding defense signaling and recognition proteins exhibit contrasting evolutionary dynamics
-
Caldwell KS, Michelmore RW (2009) Arabidopsis thaliana genes encoding defense signaling and recognition proteins exhibit contrasting evolutionary dynamics. Genetics 181: 671-684.
-
(2009)
Genetics
, vol.181
, pp. 671-684
-
-
Caldwell, K.S.1
Michelmore, R.W.2
-
38
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
39
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
40
-
-
0032912347
-
Molecular population genetics of floral homeotic loci. Departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana
-
Purugganan MD, Suddith JI (1999) Molecular population genetics of floral homeotic loci. Departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana. Genetics 151: 839-848.
-
(1999)
Genetics
, vol.151
, pp. 839-848
-
-
Purugganan, M.D.1
Suddith, J.I.2
-
41
-
-
0034123358
-
Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana
-
Kuittinen H, Aguade M (2000) Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana. Genetics 155: 863-872.
-
(2000)
Genetics
, vol.155
, pp. 863-872
-
-
Kuittinen, H.1
Aguade, M.2
-
42
-
-
0035151437
-
Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana
-
Aguade M (2001) Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana. Mol Biol Evol 18: 1-9.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1-9
-
-
Aguade, M.1
-
43
-
-
62349102325
-
Next is now: New technologies for sequencing of genomes, transcriptomes, and beyond
-
Lister R, Gregory BD, Ecker JR (2009) Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Curr Opin Plant Biol 12: 107-118.
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 107-118
-
-
Lister, R.1
Gregory, B.D.2
Ecker, J.R.3
-
44
-
-
70349556543
-
Personalized copy number and segmental duplication maps using nextgeneration sequencing
-
Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, et al. (2009) Personalized copy number and segmental duplication maps using nextgeneration sequencing. Nat Genet 41: 1061-1067.
-
(2009)
Nat Genet
, vol.41
, pp. 1061-1067
-
-
Alkan, C.1
Kidd, J.M.2
Marques-Bonet, T.3
Aksay, G.4
Antonacci, F.5
-
45
-
-
67650064593
-
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
-
Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC (2009) Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Res 19: 1270-1278.
-
(2009)
Genome Res
, vol.19
, pp. 1270-1278
-
-
Hormozdiari, F.1
Alkan, C.2
Eichler, E.E.3
Sahinalp, S.C.4
-
46
-
-
76249113666
-
Simultaneous alignment of short reads against multiple genomes
-
Schneeberger K, Hagmann J, Ossowski S, Warthmann N, Gesing S, et al. (2009) Simultaneous alignment of short reads against multiple genomes. Genome Biol 10: R98.
-
(2009)
Genome Biol
, vol.10
-
-
Schneeberger, K.1
Hagmann, J.2
Ossowski, S.3
Warthmann, N.4
Gesing, S.5
-
47
-
-
0001627989
-
Auxin-resistant mutants of Arabidopsis thaliana with an altered morphology
-
Estelle MA, Somerville C (1987) Auxin-resistant mutants of Arabidopsis thaliana with an altered morphology. Mol Gen Genet 206: 200-206.
-
(1987)
Mol Gen Genet
, vol.206
, pp. 200-206
-
-
Estelle, M.A.1
Somerville, C.2
-
48
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
49
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
50
-
-
33846258111
-
On the advantages of using green light to study fluorescence yield changes in leaves
-
Rappaport F, Beal D, Joliot A, Joliot P (2007) On the advantages of using green light to study fluorescence yield changes in leaves. Biochim Biophys Acta 1767: 56-65.
-
(2007)
Biochim Biophys Acta
, vol.1767
, pp. 56-65
-
-
Rappaport, F.1
Beal, D.2
Joliot, A.3
Joliot, P.4
|