Roseovarius albus sp. nov., a new Alphaproteobacterium isolated from the Mediterranean Sea

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 105, Issue 4, 2014, Pages 671-678

  Lucena, Teresa ^a   Ruvira, María A ^a   Macián, M Carmen ^a   Pujalte, María J ^a   Arahal, David R ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

Author keywords

ANI; MALDI TOF; Roseovarius

Indexed keywords

ALKALINE PHOSPHATASE; AMINO ACID; ARYL ACYLAMIDASE; CALCIUM; CARBOXYLIC ACID; FATTY ACID; MAGNESIUM; NITRITE; RNA 16S; SODIUM;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CARBON SOURCE; CLADISTICS; CONTROLLED STUDY; DNA BASE COMPOSITION; ENZYME ACTIVITY; GENE SEQUENCE; MEDITERRANEAN SEA; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RHODOBACTERACEAE; ROSEOBACTER; ROSEOVARIUS AESTUARII; ROSEOVARIUS ALBUS; ROSEOVARIUS NUBINHIBENS; SEQUENCE HOMOLOGY; SPAIN; UNINDEXED SEQUENCE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; RHODOBACTERACEAE; ROSEOBACTER; ROSEOVARIUS; ROSEOVARIUS NUBINHIBENS;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MEDITERRANEAN SEA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SPAIN;

EID: 84896488398     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-014-0121-8     Document Type: Article

References (31)

1. Arahal DR, Sánchez E, Macián MC, Garay E (2008) Value of recN sequences for species identification and as a phylogenetic marker within the family Leuconostocaceae. Int Microbiol 11:33-39 (Pubitemid 351556378)
2. Baumann P, Baumann L (1981) The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes. In: StarrMP, StolpH, Trueper HG, Balows A, Schleger H (eds) The prokaryotes, vol 2. Springer, Berlin & Heidelberg, pp 1302-1331
3. Biebl H, Allgaier M, Lünsdorf H, Pukall R, Tindall BJ, Wagner-Döbler I (2005) Roseovarius mucosus sp. nov., a member of the Roseobacter clade with trace amounts of bacteriochlorophyll a. Int J Syst Evol Microbiol 55:2377-2383 (Pubitemid 41646418)
4. Boettcher KJ, Geaghan KK, Maloy AP, Barber BJ (2005) Roseovarius crassostreae sp. nov., a member of the Roseobacter clade and the apparent cause of juvenile oyster disease (JOD) in cultured Eastern oysters. Int J Syst Evol Microbiol 55:1531-1537 (Pubitemid 41015599)
5. Choi EJ, Lee HJ, Kim JM, Jeon CO (2013) Roseovarius lutimaris sp. nov., isolated from marine tidal flat. Int J Syst Evol Microbiol 63:3835-3840
6. Farmer JJ III, Hickman-Brenner FW (2006) The genera Vibrio and Photobacterium. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, 3rd edn. Springer, New York, pp 508-563
7. González JM, Covert JS, Whitman WB, Henriksen JR, Mayer F, Scharf B, Schmitt R, Buchan A, Fuhrman JA, Kiene RP, Moran MA (2003) Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol 53:1261-1269 (Pubitemid 37184952)
8. Jung YT, Lee JS, Oh KH, Oh TK, Yoon JH (2011) Roseovarius marinus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61:427-432
9. Jung YT, Park S, Yoon JH (2012) Roseovarius litoreus sp. nov., isolated from seawater of southern coast of Korean peninsula. Antonie Van Leeuwenhoek 102:141-148
10. Kim YO, Kong HJ, Park S, Kang SJ, Kim WJ, Kim KK, Oh TK, Yoon JH (2012) Roseovarius halocynthiae sp. nov., isolated from the sea squirt Halocynthia roretzi. Int J Syst Evol Microbiol 62:931-936
11. Labrenz M, Collins MD, Lawson PA, Tindall BJ, Schumann P, Hirsch P (1999) Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Evol Microbiol 49:137-147 (Pubitemid 29225871)
12. Lai Q, Zhong H, Wang J, Yuan J, Sun F, Wang L, Zheng T, Shao Z (2011) Roseovarius indicus sp. nov., isolated from deepsea water of the Indian Ocean. Int J Syst Evol Microbiol 61:2040-2044
13. Li Z, Zhao R, Ji S, Shi X, Zhang X-H (2013) Roseovarius marisflavi sp. nov., isolated from an amphioxus breeding zone in the coastal region of the Yellow Sea. China. Antonie van Leeuwenhoek 104:413-421
14. Lucena T, Pascual J, Garay E, Arahal DR, Macián MC, Pujalte MJ (2010) Haliea mediterranea sp. nov., a new marine gamma-proteobacterium. Int J Syst Evol Microbiol 60:1844-1848
15. Lucena T, Pujalte MJ, Ruvira MA, Garay E, Macián MC, Arahal DR (2012) Tropicibacter multivorans sp. nov., a strictly aerobic Alphaproteobacterium isolated from surface seawater. Int J Syst Evol Microbiol 62:844-848
16. Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G et al (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363-1371 (Pubitemid 38854737)
17. Macián MC, Ludwig W, Schleifer KH, Garay E, Pujalte MJ (2001) Thalassomonas viridans gen. nov., sp. nov., a novel marine gamma- proteobacterium. Int J Syst Evol Microbiol 51:1283-1289 (Pubitemid 32700623)
18. Macián MC, Arahal DR, Garay E, Ludwig W, Schleifer KH, Pujalte MJ (2005) Thalassobacter stenotrophicus gen. nov., sp. nov., a novel marine alpha-proteobacterium isolated from Mediterranean sea water. Int J Syst Evol Microbiol 55:105-110 (Pubitemid 40185482)
19. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform 14:60
20. Oh YS, Lim HJ, Cha IT, Im WT, Yoo JS, Kang UG, Rhee SK, Roh DH (2009) Roseovarius halotolerans sp. nov., isolated from deep seawater. Int J Syst Evol Microbiol 59:2718-2723
21. Ortigosa M, Garay E, Pujalte MJ (1994) Numerical taxonomy of aerobic, gram-negative bacteria associated with oysters and surrounding seawater of the Mediterranean coast. Syst Appl Microbiol 17:589-600
22. Park S, Yoon JH (2013) Roseovarius sediminilitoris sp. nov., isolated from seashore sediment. Int J Syst Evol Microbiol 63:1741-1745
23. Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188-7196
24. Pujalte MJ, Lucena T, Ruvira MA, Arahal, Macián MC (2014) The family Rhodobacteraceae. In: Rosenberg E, DeLong EF, Stackebrandt E, Lory S, Thompson F (eds) The prokaryotes, prokaryotic biology and symbiotic associations, 4th edn. Springer, New York
25. Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106:19126-19131
26. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. MIDI Inc., Newark
27. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607-654
28. Wang B, Tan T, Shao Z (2009) Roseovarius pacificus sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 59:1116-1121
29. Wang B, Sun F, Lai Q, Du Y, Liu X, Li G, Luo J, Shao Z (2010) Roseovarius nanhaiticus sp. nov., a member of the Roseobacter clade isolated from marine sediment. Int J Syst Evol Microbiol 60:1289-1295
30. Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glöckner FO, Rosselló-Móra R (2010) Update of the all-species living tree project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291-299
31. Yoon JH, Kang SJ, Oh TK (2008) Roseovarius aestuarii sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 58:1198-1202