Roseovarius nanhaiticus sp. nov., a member of the Roseobacter clade isolated from marine sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 6, 2010, Pages 1289-1295

  Wang, Baojiang ^a   Sun, Fengqin ^a   Lai, Qiliang ^a   Du, Yaping ^a   Liu, Xiupian ^a   Li, Guangyu ^a   Luo, Jie ^a   Shao, Zongze ^a  

^a Ministry of Natural Resources of the People's Republic of China   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE; OXIDOREDUCTASE; RNA 16S; SODIUM CHLORIDE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; FATTY ACID ANALYSIS; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; ROSEOBACTER; ROSEOVARIUS AESTUARII; ROSEOVARIUS NANHAITICUS; ROSEOVARIUS PACIFICUS;

ALPHAPROTEOBACTERIA; BASE SEQUENCE; DNA PRIMERS; FATTY ACIDS; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; ROSEOBACTER; SEAWATER;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); ROSEOBACTER; ROSEOVARIUS;

EID: 77953313120     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.012930-0     Document Type: Article

References (24)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (editors) (1995). Short Protocols in Molecular Biology: a Compendium of Methods from Current Protocols in Molecular Biology, 3rd edn. New York: Wiley.
2. Biebl, H., Allgaier, M., Lünsdorf, H., Pukall, R., Tindall, B. J. & Wagner-Döbler, I. (2005). Roseovarius mucosus sp. nov., a member of the Roseobacter clade with trace amounts of bacteriochlorophyll a. Int J Syst Evol Microbiol 55, 2377-2383.
3. Boettcher, K. J., Geaghan, K. K., Maloy, A. P. & Barber, B. J. (2005). Roseovarius crassostreae sp. nov., a member of the Roseobacter clade and the apparent cause of juvenile oyster disease (JOD) in cultured Eastern oysters. Int J Syst Evol Microbiol 55, 1531-1537.
4. Buchan, A., González, J. M. & Moran, M. A. (2005). Overview of the marine Roseobacter lineage. Appl Environ Microbiol 71, 5665-5677.
5. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
6. Dai, X., Wang, B. J., Yang, Q. X., Jiao, N. Z. & Liu, S. J. (2006). Yangia pacifica gen. nov., sp. nov., a novel member of the Roseobacter clade from coastal sediment of the East China Sea. Int J Syst Evol Microbiol 56, 529-533.
7. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
8. González, J. M., Covert, J. S., Whitman, W. B., Henriksen, J. R., Mayer, F., Scharf, B., Schmitt, R., Buchan, A., Fuhrman, J. A. & other authors (2003). Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol 53, 1261-1269.
9. Hwang, C. Y. & Cho, B. C. (2008). Ponticoccus litoralis gen. nov., sp. nov., a marine bacterium in the family Rhodobacteraceae. Int J Syst Evol Microbiol 58, 1332-1338.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P. (1999). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 49, 137-147. (Pubitemid 29225871)
12. Lafay, B., Ruimy, R., Rausch de Traubenberg, C., Breittmayer, V., Gauthier,M. J. & Christen, R. (1995). Roseobacter algicola sp. nov., a new marine bacteriumisolated fromthe phycosphere of the toxin-producing dinoflagellate Prorocentrum lima. Int J Syst Bacteriol 45, 290-296.
13. Lee, K., Choo, Y. J., Giovannoni, S. J. & Cho, J. C. (2007). Maritimibacter alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacterium of the Roseobacter clade in the order Rhodobacterales. Int J Syst Evol Microbiol 57, 1653-1658.
14. Liu, C. & Shao, Z. (2005). Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55, 1181-1186.
15. Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B. J. & Brinkhoff, T. (2006). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol 56, 1293-1304.
16. Martínez-Cánovas, M. J., Quesada, E., Martínez- Checa, F., delMoral, A. & Béjar, V. (2004). Salipiger mucescens gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium isolated from hypersaline soil, belonging to the a-Proteobacteria. Int J Syst Evol Microbiol 54, 1735-1740.
17. Ruiz-Ponte, C., Cilia, V., Lambert, C. & Nicolas, J. L. (1998). Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. Int J Syst Bacteriol 48, 537-542. (Pubitemid 28272411)
18. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
20. Schaefer, J. K., Goodwin, K. D., McDonald, I. R., Murrell, J. C. & Oremland, R. S. (2002). Leisingera methylohalidivorans gen. nov., sp. nov., a marine methylotroph that grows on methyl bromide. Int J Syst Evol Microbiol 52, 851-859.
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Wagner-Döbler, I., Rheims, H., Felske, A., Pukall, R. & Tindall, B. J. (2003). Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea. Int J Syst Evol Microbiol 53, 731-738.
23. Wang, B., Tan, T. & Shao, Z. (2009). Roseovarius pacificus sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 59, 1116-1121.
24. Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2008). Roseovarius aestuarii sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 58, 1198-1202.