Value of recN sequences for species identification and as a phylogenetic marker within the family "Leuconostocaceae"

International Microbiology

Volumn 11, Issue 1, 2008, Pages 33-39

  Arahal, David R ^a   Sánchez, Ester ^a,b   Macián, M Carmen ^a   Garay, Esperanza ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

^b INSTITUTO DE AGROQUÍMICA Y TECNOLOGÍA DE ALIMENTOS CSIC   (Spain)

Author keywords

Gene recN; Leuconostoc; Oenococcus; Phylogeny; Weissella

Indexed keywords

BACTERIA (MICROORGANISMS); LEUCONOSTOC; LEUCONOSTOCACEAE; OENOCOCCUS; WEISSELLA;

EID: 42349115395     PISSN: 11396709     EISSN: 16181905     Source Type: Journal    
DOI: 10.2436/20.1501.01.42     Document Type: Article

References (20)

1. Bisgaard M, Christensen JP, Bojesen AM, Christensen H (2007) Avibacterium endocarditidis sp. nov., isolated from valvular endocarditis in chickens. Int J Syst Evol Microbiol 57:1729-1734
2. Björkroth KJ, Geisen R, Schillinger U, et al. (2000) Characterization of Leuconostoc gasicomitatum sp. nov., associated with spoiled raw tomato-marinated broiler meat strips packaged under modified-atmosphere conditions. Appl Environ Microbiol 66:3764-3772
3. Björkroth J, Holzapfel W (2006) Genera Leuconostoc, Oenococcus and Weissella. In: Dworkin M, et al. (eds) The Prokaryotes, 3rd ed. Springer, New York, pp 267-319. DOI: 10.1007/0-387-30744- 3_9
4. Chelo IM, Zé-Zé L, Tenreiro R (2007) Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK. Int J Syst Evol Microbiol 57:276-286
5. Dicks LMT, Fantuzzi L, Gonzalez FC, Du Toit M, Dellaglio F (1993) Leuconostoc argentinum sp. nov., isolated from Argentine raw milk. Int J Syst Bacteriol 43:347-351
6. Kim B, Lee J, Jang J, Kim J, Han H (2003) Leuconostoc inhae sp. nov., a lactic acid bacterium isolated from kimchi. Int J Syst Evol Microbiol 53:1123-1126
7. Konstantinidis KT, Tiedje JM (2005) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187:6258-6264
8. Koort J, Coenye T, Santos EM, et al. (2006) Diversity of Weissella viridescens associated with "morcilla de Burgos". Int J Food Microbiol 109:164-168
9. Kuhnert P, Korczak BM (2006) Prediction of whole-genome DNA-DNA similarity, determination of G+C content and phylogenetic analysis within the family Pasteurellaceae by multilocus sequence analysis (MLSA). Microbiology 152:2537-2548
10. Lisboa MP, Bonatto D, Bizani D, Henriques JAP, Brandelli A (2006) Characterization of a bacteriocin-like substance produced by Bacillus amyloliquefaciens isolated from a Brazilian Atlantic forest. Int Microbiol 9:111-118
11. Ludwig W, Strunk O, Westram R, et al. (2004) ARB: a software environment for sequence data. Nuc Acids Res 32:1363-1371
12. Rosselló-Mora R (2005) DNA-DNA reassociation methods applied to microbial taxonomy and their critical evaluation. In: Stackebrandt E (ed) Molecular identification, systematics, and population structure of prokaryotes. Springer, Heidelberg, Germany, pp 23-50
13. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
14. Stackebrandt E, Goebel BM (1994) A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
15. Stackebrandt E, Frederiksen W, Garrity GM, et al. (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043-1047
16. Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33:152-155
17. Vancanneyt M, Zamfir M, De Wachter M, et al. (2006) Reclassification of Leuconostoc argentinum as a later synonym of Leuconostoc lactis. Int J Syst Evol Microbiol 56:213-216
18. Wayne LG, Brenner DJ, Colwell RR, et al. (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
19. Zeigler DR (2003) Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int J Syst Evol Microbiol 53:1893-1900
20. Zeigler DR (2005) Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus. Int J Syst Evol Microbiol 55:1171-1179