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Volumn 38, Issue 2, 2014, Pages 296-306

Genome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: In silico approaches

Author keywords

Brachypodium distachyon; Genome wide analysis; GRF; Growth regulating factor

Indexed keywords


EID: 84896283633     PISSN: 13000152     EISSN: 13036092     Source Type: Journal    
DOI: 10.3906/biy-1308-57     Document Type: Article
Times cited : (37)

References (32)
  • 3
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M (2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 4
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • Cannon SB, Mitra A, Baumgarten A, Young ND, May G (2004). The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4: 53-62.
    • (2004) BMC Plant Biol , vol.4 , pp. 53-62
    • Cannon, S.B.1    Mitra, A.2    Baumgarten, A.3    Young, N.D.4    May, G.5
  • 5
    • 4344671251 scopus 로고    scopus 로고
    • Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.)
    • Choi D, Kim JH, Kende H (2004). Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.). Plant Cell Physiol 45: 897-904.
    • (2004) Plant Cell Physiol , vol.45 , pp. 897-904
    • Choi, D.1    Kim, J.H.2    Kende, H.3
  • 7
    • 54449091448 scopus 로고    scopus 로고
    • GSDS: A gene structure display server
    • Guo AY, Zhu QH, Chen X, Luo JC (2007). GSDS: a gene structure display server. Yi Chuan 29: 1023-1026.
    • (2007) Yi Chuan , vol.29 , pp. 1023-1026
    • Guo, A.Y.1    Zhu, Q.H.2    Chen, X.3    Luo, J.C.4
  • 8
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT
    • Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucl Acid S 41: 95-98.
    • (1999) Nucl Acid S , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 9
    • 22044453506 scopus 로고    scopus 로고
    • The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana
    • Horiguchi G, Kim GT, Tsukaya H (2005). The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana. Plant J 43: 68-78.
    • (2005) Plant J , vol.43 , pp. 68-78
    • Horiguchi, G.1    Kim, G.T.2    Tsukaya, H.3
  • 10
    • 82355182922 scopus 로고    scopus 로고
    • Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers
    • Hu LF, Liu SQ (2011). Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers. Genet Mol Biol 34: 624-633.
    • (2011) Genet Mol Biol , vol.34 , pp. 624-633
    • Hu, L.F.1    Liu, S.Q.2
  • 11
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • International Brachypodium Initiative
    • International Brachypodium Initiative (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
    • (2010) Nature , vol.463 , pp. 763-768
  • 13
    • 0141872963 scopus 로고    scopus 로고
    • The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis
    • Kim JH, Choi D, Kende H (2003). The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 36: 94-104.
    • (2003) Plant J , vol.36 , pp. 94-104
    • Kim, J.H.1    Choi, D.2    Kende, H.3
  • 14
    • 4444358886 scopus 로고    scopus 로고
    • A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis
    • Kim JH, Kende H (2004). A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. P Natl Acad Sci USA 101: 13374-13379.
    • (2004) P Natl Acad Sci USA , vol.101 , pp. 13374-13379
    • Kim, J.H.1    Kende, H.2
  • 15
    • 84867001921 scopus 로고    scopus 로고
    • Arabidopsis GROWTH-REGULATING FACTOR7 functions as a transcriptional repressor of abscisic acid and osmotic stress-responsive genes, including DREB2A
    • Kim JS, Mizoi J, Kidokoro S, Maruyama K, Nakajima J, Nakashima K, Mitsuda N, Takiguchi Y, Ohme-Takagi M, Kondou Y et al. (2012). Arabidopsis GROWTH-REGULATING FACTOR7 functions as a transcriptional repressor of abscisic acid and osmotic stress-responsive genes, including DREB2A. Plant Cell 24: 3393-3405.
    • (2012) Plant Cell , vol.24 , pp. 3393-3405
    • Kim, J.S.1    Mizoi, J.2    Kidokoro, S.3    Maruyama, K.4    Nakajima, J.5    Nakashima, K.6    Mitsuda, N.7    Takiguchi, Y.8    Ohme-Takagi, M.9    Kondou, Y.10
  • 16
    • 79952745764 scopus 로고    scopus 로고
    • Genome-wide analysis of the auxin response factor (ARF) gene family in maize (Zea mays)
    • Liu Y, Jiang HY, Chen W, Qian Y, Ma Q, Cheng B, Zhu S (2011). Genome-wide analysis of the auxin response factor (ARF) gene family in maize (Zea mays). Plant Growth Regul 63: 225-234.
    • (2011) Plant Growth Regul , vol.63 , pp. 225-234
    • Liu, Y.1    Jiang, H.Y.2    Chen, W.3    Qian, Y.4    Ma, Q.5    Cheng, B.6    Zhu, S.7
  • 17
    • 80053299004 scopus 로고    scopus 로고
    • Plant protein-coding gene families: Emerging bioinformatics approaches
    • Martinez M (2011). Plant protein-coding gene families: emerging bioinformatics approaches. Trends Plant Sci 16: 1360-1385.
    • (2011) Trends Plant Sci , vol.16 , pp. 1360-1385
    • Martinez, M.1
  • 20
    • 0032422925 scopus 로고    scopus 로고
    • Pathways, mechanisms, and rates of polyploid formation in flowering plants
    • Ramsey J, Schemske DW (1998). Pathways, mechanisms, and rates of polyploid formation in flowering plants. Annu Rev Ecol Evol Syst 29: 467-501.
    • (1998) Annu Rev Ecol Evol Syst , vol.29 , pp. 467-501
    • Ramsey, J.1    Schemske, D.W.2
  • 22
    • 33749357831 scopus 로고    scopus 로고
    • Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
    • Rizzon C, Ponger L, Gaut BS (2006). Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol 2: e115.
    • (2006) PLoS Comput Biol , vol.2
    • Rizzon, C.1    Ponger, L.2    Gaut, B.S.3
  • 23
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 24
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 26
    • 0029038911 scopus 로고
    • SNF11, a new component of the yeast SNF-SWI complex that interacts with a conserved region of SNF2
    • Treich I, Cairns BR, de los Santos T, Brewster E, Carlson M (1995). SNF11, a new component of the yeast SNF-SWI complex that interacts with a conserved region of SNF2. Mol Cell Biol 15: 4240-4248.
    • (1995) Mol Cell Biol , vol.15 , pp. 4240-4248
    • Treich, I.1    Cairns, B.R.2    de los, S.T.3    Brewster, E.4    Carlson, M.5
  • 27
    • 79960744116 scopus 로고    scopus 로고
    • Brachypodium as a model system for grass research
    • Vain P (2011) Brachypodium as a model system for grass research. J Cereal Sci 54: 1-7.
    • (2011) J Cereal Sci , vol.54 , pp. 1-7
    • Vain, P.1
  • 28
    • 0033768220 scopus 로고    scopus 로고
    • A novel gibberellin- induced gene from rice and its potential regulatory role in stem growth
    • Van der Knaap E, Kim JH, Kende H (2000). A novel gibberellin- induced gene from rice and its potential regulatory role in stem growth. Plant Physiol 122: 695-704.
    • (2000) Plant Physiol , vol.122 , pp. 695-704
    • Van der, K.E.1    Kim, J.H.2    Kende, H.3
  • 29
    • 84856405887 scopus 로고    scopus 로고
    • Divergence of duplicate genes in exon-intron structure
    • Xu G, Guo C, Shan H, Kong H (2012). Divergence of duplicate genes in exon-intron structure. P Natl Acad Sci USA109: 1187-1192.
    • (2012) P Natl Acad Sci USA , vol.109 , pp. 1187-1192
    • Xu, G.1    Guo, C.2    Shan, H.3    Kong, H.4
  • 31
    • 49749103942 scopus 로고    scopus 로고
    • Recent duplications dominate NBS-encoding gene expansion in two woody species
    • Yang S, Zhang X, Yue JX, Tian D, Chen JQ (2008). Recent duplications dominate NBS-encoding gene expansion in two woody species. Mol Genet Genomics 280: 187-198.
    • (2008) Mol Genet Genomics , vol.280 , pp. 187-198
    • Yang, S.1    Zhang, X.2    Yue, J.X.3    Tian, D.4    Chen, J.Q.5
  • 32
    • 54449083342 scopus 로고    scopus 로고
    • Isolation and characterization of genes encoding GRF transcription factors and GIF transcriptional coactivators in Maize (Zea mays L.)
    • Zhang DF, Li B, Jia GQ, Zhang TF, Dai JR, Li JS, Wang SC (2008). Isolation and characterization of genes encoding GRF transcription factors and GIF transcriptional coactivators in Maize (Zea mays L.). Plant Sci 175: 809-817.
    • (2008) Plant Sci , vol.175 , pp. 809-817
    • Zhang, D.F.1    Li, B.2    Jia, G.Q.3    Zhang, T.F.4    Dai, J.R.5    Li, J.S.6    Wang, S.C.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.