메뉴 건너뛰기




Volumn 280, Issue 3, 2008, Pages 187-198

Recent duplications dominate NBS-encoding gene expansion in two woody species

Author keywords

Disease resistance genes; Evolution; Grapevine; NBS LRR genes; Poplar

Indexed keywords

PROTEIN LRR; PROTEIN NBS; VEGETABLE PROTEIN;

EID: 49749103942     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-008-0355-0     Document Type: Article
Times cited : (378)

References (39)
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 408 796 815
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 0029197507 scopus 로고    scopus 로고
    • The value of prior knowledge in discovering motifs with MEME
    • TL Bailey C Elkan 2007 The value of prior knowledge in discovering motifs with MEME Proc Int Conf Intell Syst Mol Biol 3 21 29
    • (2007) Proc Int Conf Intell Syst Mol Biol , vol.3 , pp. 21-29
    • Bailey, T.L.1    Elkan, C.2
  • 5
    • 35148827341 scopus 로고    scopus 로고
    • Elicitors, effectors, and R-genes: The new paradigm and a lifetime supply of questions
    • AF Bent D Mackey 2007 Elicitors, effectors, and R-genes: the new paradigm and a lifetime supply of questions Annu Rev Phytopathol 45 399 436
    • (2007) Annu Rev Phytopathol , vol.45 , pp. 399-436
    • Bent, A.F.1    MacKey, D.2
  • 6
    • 0036212554 scopus 로고    scopus 로고
    • Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies
    • SB Cannon H Zhu AM Baumgarten R Spangler G May DR Cook ND Young 2002 Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies J Mol Evol 54 548 562
    • (2002) J Mol Evol , vol.54 , pp. 548-562
    • Cannon, S.B.1    Zhu, H.2    Baumgarten, A.M.3    Spangler, R.4    May, G.5    Cook, D.R.6    Young, N.D.7
  • 7
    • 0035859020 scopus 로고    scopus 로고
    • Plant pathogens and integrated defence responses to infection
    • JL Dangl JD Jones 2001 Plant pathogens and integrated defence responses to infection Nature 411 826 833
    • (2001) Nature , vol.411 , pp. 826-833
    • Dangl, J.L.1    Jones, J.D.2
  • 9
    • 34248666719 scopus 로고    scopus 로고
    • Unique pattern of R-gene variation within populations in Arabidopsis
    • J Ding W Zhang Z Jing JQ Chen D Tian 2007 Unique pattern of R-gene variation within populations in Arabidopsis Mol Genet Genomics 277 619 629
    • (2007) Mol Genet Genomics , vol.277 , pp. 619-629
    • Ding, J.1    Zhang, W.2    Jing, Z.3    Chen, J.Q.4    Tian, D.5
  • 10
    • 0035408813 scopus 로고    scopus 로고
    • The arms race is ancient history in Arabidopsis, the wildflower
    • EB Holub 2001 The arms race is ancient history in Arabidopsis, the wildflower Nat Rev Genet 2 516 527
    • (2001) Nat Rev Genet , vol.2 , pp. 516-527
    • Holub, E.B.1
  • 11
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project 2005 The map-based sequence of the rice genome Nature 436 793 800
    • (2005) Nature , vol.436 , pp. 793-800
  • 12
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • O Jaillon JM Aury B Noel A Policriti C Clepet 2007 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Nature 449 463 467
    • (2007) Nature , vol.449 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5
  • 13
    • 34250820520 scopus 로고    scopus 로고
    • Pattern of LRR nucleotide variation in plant resistance genes
    • H Jiang C Wang L Ping D Tian S Yang 2007 Pattern of LRR nucleotide variation in plant resistance genes Plant Sci 173 253 261
    • (2007) Plant Sci , vol.173 , pp. 253-261
    • Jiang, H.1    Wang, C.2    Ping, L.3    Tian, D.4    Yang, S.5
  • 14
    • 1242316239 scopus 로고    scopus 로고
    • Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes
    • D Leister 2004 Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes Trends Genet 20 116 122
    • (2004) Trends Genet , vol.20 , pp. 116-122
    • Leister, D.1
  • 15
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • A Lupas M Van Dyke J Stock 1991 Predicting coiled coils from protein sequences Science 252 1162 1164
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    Van Dyke, M.2    Stock, J.3
  • 16
    • 0025289181 scopus 로고
    • The analysis of population survey data on DNA sequence variation
    • M Lynch TJ Crease 1990 The analysis of population survey data on DNA sequence variation Mol Biol Evol 7 377 394
    • (1990) Mol Biol Evol , vol.7 , pp. 377-394
    • Lynch, M.1    Crease, T.J.2
  • 18
    • 0033231602 scopus 로고    scopus 로고
    • Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily
    • BC Meyers AW Dickerman RW Michelmore S Sivaramakrishnan BW Sobral ND Young 1999 Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily Plant J 20 317 332
    • (1999) Plant J , vol.20 , pp. 317-332
    • Meyers, B.C.1    Dickerman, A.W.2    Michelmore, R.W.3    Sivaramakrishnan, S.4    Sobral, B.W.5    Young, N.D.6
  • 20
    • 0036793439 scopus 로고    scopus 로고
    • TIR-X and TIR-NBS proteins: Two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes
    • BC Meyers M Morgante RW Michelmore 2002 TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes Plant J 32 77 92
    • (2002) Plant J , vol.32 , pp. 77-92
    • Meyers, B.C.1    Morgante, M.2    Michelmore, R.W.3
  • 21
    • 0032415864 scopus 로고    scopus 로고
    • Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process
    • RW Michelmore BC Meyers 1998 Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process Genome Res 8 1113 1130
    • (1998) Genome Res , vol.8 , pp. 1113-1130
    • Michelmore, R.W.1    Meyers, B.C.2
  • 22
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • M Nei T Gojobori 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol Biol Evol 3 418 426
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 23
    • 12444288067 scopus 로고    scopus 로고
    • Diversification of non-TIR class NB-LRR genes in relation to whole-genome duplication events in Arabidopsis
    • K Nobuta T Ashfield S Kim RW Innes 2005 Diversification of non-TIR class NB-LRR genes in relation to whole-genome duplication events in Arabidopsis Mol Plant Microbe Interact 18 103 109
    • (2005) Mol Plant Microbe Interact , vol.18 , pp. 103-109
    • Nobuta, K.1    Ashfield, T.2    Kim, S.3    Innes, R.W.4
  • 24
    • 0031469143 scopus 로고    scopus 로고
    • Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato
    • M Parniske KE Hammond-Kosack C Golstein CM Thomas DA Jones K Harrison BB Wulff JD Jones 1997 Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato Cell 91 821 832
    • (1997) Cell , vol.91 , pp. 821-832
    • Parniske, M.1    Hammond-Kosack, K.E.2    Golstein, C.3    Thomas, C.M.4    Jones, D.A.5    Harrison, K.6    Wulff, B.B.7    Jones, J.D.8
  • 25
    • 27544478621 scopus 로고    scopus 로고
    • The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
    • Rice Chromosomes 11 and 12 Sequencing Consortia
    • Rice Chromosomes 11 and 12 Sequencing Consortia 2005 The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications BMC Biol 3 20
    • (2005) BMC Biol , vol.3 , pp. 20
  • 27
    • 33644765887 scopus 로고    scopus 로고
    • Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana
    • J Shen H Araki L Chen JQ Chen D Tian 2006 Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana Genetics 172 1243 1250
    • (2006) Genetics , vol.172 , pp. 1243-1250
    • Shen, J.1    Araki, H.2    Chen, L.3    Chen, J.Q.4    Tian, D.5
  • 28
    • 2442591728 scopus 로고    scopus 로고
    • Comparative analysis of the receptor-like kinase family in Arabidopsis and rice
    • SH Shiu WM Karlowski R Pan YH Tzeng KF Mayer WH Li 2004 Comparative analysis of the receptor-like kinase family in Arabidopsis and rice Plant Cell 16 1220 1234
    • (2004) Plant Cell , vol.16 , pp. 1220-1234
    • Shiu, S.H.1    Karlowski, W.M.2    Pan, R.3    Tzeng, Y.H.4    Mayer, K.F.5    Li, W.H.6
  • 29
    • 0035808530 scopus 로고    scopus 로고
    • Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8
    • S Xiao S Ellwood O Calis E Patrick T Li 2001 Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8 Science 291 118 120
    • (2001) Science , vol.291 , pp. 118-120
    • Xiao, S.1    Ellwood, S.2    Calis, O.3    Patrick, E.4    Li, T.5
  • 30
    • 4143117755 scopus 로고    scopus 로고
    • Origin and maintenance of a broad-spectrum disease resistance locus in Arabidopsis
    • S Xiao B Emerson K Ratanasut E Patrick C O'Neill 2004 Origin and maintenance of a broad-spectrum disease resistance locus in Arabidopsis Mol Biol Evol 21 1661 1672
    • (2004) Mol Biol Evol , vol.21 , pp. 1661-1672
    • Xiao, S.1    Emerson, B.2    Ratanasut, K.3    Patrick, E.4    O'Neill, C.5
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
  • 36
    • 34247097007 scopus 로고    scopus 로고
    • A molecular isolation mechanism associated with high intra-specific diversity in rice
    • S Yang K Jiang H Araki J Ding YH Yang D Tian 2007 A molecular isolation mechanism associated with high intra-specific diversity in rice Gene 394 87 95
    • (2007) Gene , vol.394 , pp. 87-95
    • Yang, S.1    Jiang, K.2    Araki, H.3    Ding, J.4    Yang, Y.H.5    Tian, D.6
  • 37
    • 20144366003 scopus 로고    scopus 로고
    • The Genomes of Oryza sativa: A history of duplications
    • J Yu J Wang W Lin S Li H Li 2005 The Genomes of Oryza sativa: a history of duplications PLoS Biol 3 e38
    • (2005) PLoS Biol , vol.3 , pp. 38
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.4    Li, H.5
  • 38
    • 0642373709 scopus 로고    scopus 로고
    • Different evolutionary patterns between young duplicate genes in the human genome
    • P Zhang Z Gu WH Li 2003 Different evolutionary patterns between young duplicate genes in the human genome Genome Biol 4 R56
    • (2003) Genome Biol , vol.4 , pp. 56
    • Zhang, P.1    Gu, Z.2    Li, W.H.3
  • 39
    • 3042575125 scopus 로고    scopus 로고
    • Genome-wide identification of NBS genes in rice reveals significant expansion of divergent non-TIR NBS genes
    • T Zhou Y Wang JQ Chen H Araki Z Jing K Jiang J Shen D Tian 2004 Genome-wide identification of NBS genes in rice reveals significant expansion of divergent non-TIR NBS genes Mol Genet Genomics 271 402 415
    • (2004) Mol Genet Genomics , vol.271 , pp. 402-415
    • Zhou, T.1    Wang, Y.2    Chen, J.Q.3    Araki, H.4    Jing, Z.5    Jiang, K.6    Shen, J.7    Tian, D.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.