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Volumn 9, Issue 2, 2014, Pages

A critical evaluation of microRNA biomarkers in non-neoplastic disease

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; MICRORNA; MICRORNA 122; MICRORNA 126; MICRORNA 146A; MICRORNA 155; MICRORNA 16; MICRORNA 21; MICRORNA 223;

EID: 84896277946     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0089565     Document Type: Article
Times cited : (137)

References (51)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 34250330831 scopus 로고    scopus 로고
    • MicroRNA expression dynamics during murine and human erythroid differentiation
    • DOI 10.1016/j.exphem.2007.03.014, PII S0301472X0700197X
    • Zhan M, Miller CP, Papayannopoulou T, Stamatoyannopoulos G, Song CZ (2007) MicroRNA expression dynamics during murine and human erythroid differentiation. Exp Hematol 35: 1015-1025. (Pubitemid 46921304)
    • (2007) Experimental Hematology , vol.35 , Issue.7 , pp. 1015-1025
    • Zhan, M.1    Miller, C.P.2    Papayannopoulou, T.3    Stamatoyannopoulos, G.4    Song, C.-Z.5
  • 5
    • 24644483623 scopus 로고    scopus 로고
    • Molecular biology: Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
    • DOI 10.1126/science.1113329
    • Jopling CL, Yi M, Lancaster AM, Lemon SM, Sarnow P (2005) Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 309: 1577-1581. (Pubitemid 41266486)
    • (2005) Science , vol.309 , Issue.5740 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 7
    • 84862279805 scopus 로고    scopus 로고
    • Nuclear miRNA Regulates the Mitochondrial Genome in the Heart
    • Das S, Ferlito M, Kent OA, Fox Talbot K, Wang R, et al. (2012) Nuclear miRNA Regulates the Mitochondrial Genome in the Heart. Circ Res. 110: 1596-1603.
    • (2012) Circ Res , vol.110 , pp. 1596-1603
    • Das, S.1    Ferlito, M.2    Kent, O.A.3    Fox Talbot, K.4    Wang, R.5
  • 8
    • 34249302620 scopus 로고    scopus 로고
    • Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells
    • DOI 10.1038/ncb1596, PII NCB1596
    • Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, et al. (2007) Exosomemediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol 9: 654-659. (Pubitemid 47214727)
    • (2007) Nature Cell Biology , vol.9 , Issue.6 , pp. 654-659
    • Valadi, H.1    Ekstrom, K.2    Bossios, A.3    Sjostrand, M.4    Lee, J.J.5    Lotvall, J.O.6
  • 9
    • 57849130395 scopus 로고    scopus 로고
    • Detection of microRNA expression in human peripheral blood microvesicles
    • Hunter MP, Ismail N, Zhang X, Aguda BD, Lee EJ, et al. (2008) Detection of microRNA expression in human peripheral blood microvesicles. PLoS One 3: e3694.
    • (2008) PLoS One , vol.3
    • Hunter, M.P.1    Ismail, N.2    Zhang, X.3    Aguda, B.D.4    Lee, E.J.5
  • 12
    • 0035100888 scopus 로고    scopus 로고
    • Biomarkers and surrogate endpoints: Preferred definitions and conceptual framework
    • Biomarkers Definitions Working G
    • Biomarkers Definitions Working G (2001) Biomarkers and surrogate endpoints: preferred definitions and conceptual framework. Clin Pharmacol Ther 69: 89-95.
    • (2001) Clin Pharmacol Ther , vol.69 , pp. 89-95
  • 13
    • 84859464569 scopus 로고    scopus 로고
    • Blood cell origin of circulating microRNAs: A cautionary note for cancer biomarker studies
    • Phila
    • Pritchard CC, Kroh E, Wood B, Arroyo JD, Dougherty KJ, et al. (2012) Blood cell origin of circulating microRNAs: a cautionary note for cancer biomarker studies. Cancer Prev Res (Phila) 5: 492-497.
    • (2012) Cancer Prev Res , vol.5 , pp. 492-497
    • Pritchard, C.C.1    Kroh, E.2    Wood, B.3    Arroyo, J.D.4    Dougherty, K.J.5
  • 14
    • 54849408182 scopus 로고    scopus 로고
    • An analysis of human microRNA and disease associations
    • Lu M, Zhang Q, Deng M, Miao J, Guo Y, et al. (2008) An analysis of human microRNA and disease associations. PLoS One 3: e3420.
    • (2008) PLoS One , vol.3
    • Lu, M.1    Zhang, Q.2    Deng, M.3    Miao, J.4    Guo, Y.5
  • 15
    • 77958078078 scopus 로고    scopus 로고
    • Subset quantile normalization using negative control features
    • Wu Z, Aryee MJ (2010) Subset quantile normalization using negative control features. J Comput Biol 17: 1385-1395.
    • (2010) J Comput Biol , vol.17 , pp. 1385-1395
    • Wu, Z.1    Aryee, M.J.2
  • 17
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • DOI 10.1093/biostatistics/kxj037
    • Johnson WE, Li C, Rabinovic A (2007) Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8: 118-127. (Pubitemid 44906106)
    • (2007) Biostatistics , vol.8 , Issue.1 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 18
    • 84859583855 scopus 로고    scopus 로고
    • Global microRNA expression profiling of microdissected tissues identifies miR-135b as a novel biomarker for pancreatic ductal adenocarcinoma
    • Munding JB, Adai AT, Maghnouj A, Urbanik A, Zollner H, et al. (2011) Global microRNA expression profiling of microdissected tissues identifies miR-135b as a novel biomarker for pancreatic ductal adenocarcinoma. Int J Cancer 131: E86-96.
    • (2011) Int J Cancer , vol.131
    • Munding, J.B.1    Adai, A.T.2    Maghnouj, A.3    Urbanik, A.4    Zollner, H.5
  • 19
    • 79956152467 scopus 로고    scopus 로고
    • Placental-specific microRNA in maternal circulation-identification of appropriate pregnancy-associated microRNAs with diagnostic potential
    • Kotlabova K, Doucha J, Hromadnikova I (2011) Placental-specific microRNA in maternal circulation-identification of appropriate pregnancy-associated microRNAs with diagnostic potential. J Reprod Immunol 89: 185-191.
    • (2011) J Reprod Immunol , vol.89 , pp. 185-191
    • Kotlabova, K.1    Doucha, J.2    Hromadnikova, I.3
  • 20
    • 78649731017 scopus 로고    scopus 로고
    • Serum and urinary cell-free MiR-146a and MiR-155 in patients with systemic lupus erythematosus
    • Wang G, Tam LS, Li EK, Kwan BC, Chow KM, et al. (2010) Serum and urinary cell-free MiR-146a and MiR-155 in patients with systemic lupus erythematosus. J Rheumatol 37: 2516-2522.
    • (2010) J Rheumatol , vol.37 , pp. 2516-2522
    • Wang, G.1    Tam, L.S.2    Li, E.K.3    Kwan, B.C.4    Chow, K.M.5
  • 21
    • 80052760391 scopus 로고    scopus 로고
    • Increased microRNA-1 and microRNA-133a levels in serum of patients with cardiovascular disease indicate myocardial damage
    • Kuwabara Y, Ono K, Horie T, Nishi H, Nagao K, et al. (2011) Increased microRNA-1 and microRNA-133a levels in serum of patients with cardiovascular disease indicate myocardial damage. Circ Cardiovasc Genet 4: 446-454.
    • (2011) Circ Cardiovasc Genet , vol.4 , pp. 446-454
    • Kuwabara, Y.1    Ono, K.2    Horie, T.3    Nishi, H.4    Nagao, K.5
  • 22
    • 0031049280 scopus 로고    scopus 로고
    • Why the impact factor of journals should not be used for evaluating research
    • Seglen PO (1997) Why the impact factor of journals should not be used for evaluating research. BMJ 314: 498-502.
    • (1997) BMJ , vol.314 , pp. 498-502
    • Seglen, P.O.1
  • 23
    • 51649111487 scopus 로고    scopus 로고
    • Differential expression of microRNAs in hematopoietic cell lineages
    • Merkerova M, Belickova M, Bruchova H (2008) Differential expression of microRNAs in hematopoietic cell lineages. Eur J Haematol 81: 304-310.
    • (2008) Eur J Haematol , vol.81 , pp. 304-310
    • Merkerova, M.1    Belickova, M.2    Bruchova, H.3
  • 24
    • 71549165765 scopus 로고    scopus 로고
    • A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance
    • van Rooij E, Quiat D, Johnson BA, Sutherland LB, Qi X, et al. (2009) A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance. Dev Cell 17: 662-673.
    • (2009) Dev Cell , vol.17 , pp. 662-673
    • Van Rooij, E.1    Quiat, D.2    Johnson, B.A.3    Sutherland, L.B.4    Qi, X.5
  • 25
    • 84862801756 scopus 로고    scopus 로고
    • Loss ofmiR-133a expression associated with poor survival of breast cancer and restoration of miR-133a expression inhibited breast cancer cell growth and invasion
    • WuZS,Wang CQ, Xiang R, Liu X, Ye S, et al. (2012) Loss ofmiR-133a expression associated with poor survival of breast cancer and restoration of miR-133a expression inhibited breast cancer cell growth and invasion. BMC Cancer 12: 51.
    • (2012) BMC Cancer , vol.12 , pp. 51
    • Wu, Z.S.1    Wang, C.Q.2    Xiang, R.3    Liu, X.4    Ye, S.5
  • 26
    • 77957259803 scopus 로고    scopus 로고
    • Plasma microRNA profiling reveals loss of endothelial miR-126 and other microRNAs in type 2 diabetes
    • Zampetaki A, Kiechl S, Drozdov I, Willeit P, Mayr U, et al. (2010) Plasma microRNA profiling reveals loss of endothelial miR-126 and other microRNAs in type 2 diabetes. Circ Res 107: 810-817.
    • (2010) Circ Res , vol.107 , pp. 810-817
    • Zampetaki, A.1    Kiechl, S.2    Drozdov, I.3    Willeit, P.4    Mayr, U.5
  • 27
    • 77958517467 scopus 로고    scopus 로고
    • MiRNA profile associated with replicative senescence, extended cell culture, and ectopic telomerase expression in human foreskin fibroblasts
    • Bonifacio LN, Jarstfer MB (2010) MiRNA profile associated with replicative senescence, extended cell culture, and ectopic telomerase expression in human foreskin fibroblasts. PLoS One 5: e12519.
    • (2010) PLoS One , vol.5
    • Bonifacio, L.N.1    Jarstfer, M.B.2
  • 28
    • 80255137053 scopus 로고    scopus 로고
    • MicroRNA-29 in aortic dilation: Implications for aneurysm formation
    • Boon RA, Seeger T, Heydt S, Fischer A, Hergenreider E, et al. (2011) MicroRNA-29 in aortic dilation: implications for aneurysm formation. Circ Res 109: 1115-1119.
    • (2011) Circ Res , vol.109 , pp. 1115-1119
    • Boon, R.A.1    Seeger, T.2    Heydt, S.3    Fischer, A.4    Hergenreider, E.5
  • 29
    • 47049119934 scopus 로고    scopus 로고
    • MicroRNA-210 modulates endothelial cell response to hypoxia and inhibits the receptor tyrosine kinase ligand Ephrin-A3
    • Fasanaro P, D'Alessandra Y, Di Stefano V,Melchionna R, Romani S, et al. (2008) MicroRNA-210 modulates endothelial cell response to hypoxia and inhibits the receptor tyrosine kinase ligand Ephrin-A3. J Biol Chem 283: 15878-15883.
    • (2008) J Biol Chem , vol.283 , pp. 15878-15883
    • Fasanaro, P.1    D'Alessandra, Y.2    Di Stefano, V.3    Melchionna, R.4    Romani, S.5
  • 30
    • 84860340270 scopus 로고    scopus 로고
    • A cardiac microRNA governs systemic energy homeostasis by regulation of MED13
    • Grueter CE, van Rooij E, Johnson BA, DeLeon SM, Sutherland LB, et al. (2012) A cardiac microRNA governs systemic energy homeostasis by regulation of MED13. Cell 149: 671-683.
    • (2012) Cell , vol.149 , pp. 671-683
    • Grueter, C.E.1    Van Rooij, E.2    Johnson, B.A.3    DeLeon, S.M.4    Sutherland, L.B.5
  • 31
    • 84858379476 scopus 로고    scopus 로고
    • MicroRNAs in stress signaling and human disease
    • Mendell JT, Olson EN (2012) MicroRNAs in stress signaling and human disease. Cell 148: 1172-1187.
    • (2012) Cell , vol.148 , pp. 1172-1187
    • Mendell, J.T.1    Olson, E.N.2
  • 32
    • 34250172419 scopus 로고    scopus 로고
    • MicroRNA expression signature and antisense-mediated depletion reveal an essential role of MicroRNA in vascular neointimal lesion formation
    • DOI 10.1161/CIRCRESAHA.106.141986
    • Ji R, Cheng Y, Yue J, Yang J, Liu X, et al. (2007) MicroRNA expression signature and antisense-mediated depletion reveal an essential role of MicroRNA in vascular neointimal lesion formation. Circ Res 100: 1579-1588. (Pubitemid 46897261)
    • (2007) Circulation Research , vol.100 , Issue.11 , pp. 1579-1588
    • Ji, R.1    Cheng, Y.2    Yue, J.3    Yang, J.4    Liu, X.5    Chen, H.6    Dean, D.B.7    Zhang, C.8
  • 33
    • 33847038668 scopus 로고    scopus 로고
    • MicroRNAs play an essential role in the development of cardiac hypertrophy
    • Sayed D, Hong C, Chen IY, Lypowy J, Abdellatif M (2007) MicroRNAs play an essential role in the development of cardiac hypertrophy. Circ Res 100: 416-424.
    • (2007) Circ Res , vol.100 , pp. 416-424
    • Sayed, D.1    Hong, C.2    Chen, I.Y.3    Lypowy, J.4    Abdellatif, M.5
  • 34
    • 77955373730 scopus 로고    scopus 로고
    • miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis
    • Liu G, Friggeri A, Yang Y, Milosevic J, Ding Q, et al. (2010) miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis. J Exp Med 207: 1589-1597.
    • (2010) J Exp Med , vol.207 , pp. 1589-1597
    • Liu, G.1    Friggeri, A.2    Yang, Y.3    Milosevic, J.4    Ding, Q.5
  • 36
    • 77956842581 scopus 로고    scopus 로고
    • MicroRNA-21 is a key determinant in IL-11/Stat3 anti-apoptotic signalling pathway in preconditioning of skeletal myoblasts
    • Haider KH, Idris NM, Kim HW, Ahmed RP, Shujia J, et al. (2010) MicroRNA-21 is a key determinant in IL-11/Stat3 anti-apoptotic signalling pathway in preconditioning of skeletal myoblasts. Cardiovasc Res 88: 168-178.
    • (2010) Cardiovasc Res , vol.88 , pp. 168-178
    • Haider, K.H.1    Idris, N.M.2    Kim, H.W.3    Ahmed, R.P.4    Shujia, J.5
  • 37
    • 77956921020 scopus 로고    scopus 로고
    • MicroRNA-21: From cancer to cardiovascular disease
    • Jazbutyte V, Thum T (2010) MicroRNA-21: from cancer to cardiovascular disease. Curr Drug Targets 11: 926-935.
    • (2010) Curr Drug Targets , vol.11 , pp. 926-935
    • Jazbutyte, V.1    Thum, T.2
  • 38
    • 48749130187 scopus 로고    scopus 로고
    • miR-126 regulates angiogenic signaling and vascular integrity
    • Fish JE, Santoro MM, Morton SU, Yu S, Yeh RF, et al. (2008) miR-126 regulates angiogenic signaling and vascular integrity. Dev Cell 15: 272-284.
    • (2008) Dev Cell , vol.15 , pp. 272-284
    • Fish, J.E.1    Santoro, M.M.2    Morton, S.U.3    Yu, S.4    Yeh, R.F.5
  • 39
    • 48549106378 scopus 로고    scopus 로고
    • The endothelial-specific microRNA miR-126 governs vascular integrity and angiogenesis
    • Wang S, Aurora AB, Johnson BA, Qi X, McAnally J, et al. (2008) The endothelial-specific microRNA miR-126 governs vascular integrity and angiogenesis. Dev Cell 15: 261-271.
    • (2008) Dev Cell , vol.15 , pp. 261-271
    • Wang, S.1    Aurora, A.B.2    Johnson, B.A.3    Qi, X.4    McAnally, J.5
  • 42
    • 84878757129 scopus 로고    scopus 로고
    • Plasma processing conditions substantially influence circulating microRNA biomarker levels
    • Cheng HH, Yi HS, Kim Y, Kroh EM, Chien JW, et al. (2013) Plasma processing conditions substantially influence circulating microRNA biomarker levels. PLoS One 8: e64795.
    • (2013) PLoS One , vol.8
    • Cheng, H.H.1    Yi, H.S.2    Kim, Y.3    Kroh, E.M.4    Chien, J.W.5
  • 43
    • 84864418989 scopus 로고    scopus 로고
    • Comparing the MicroRNA spectrum between serum and plasma
    • Wang K, Yuan Y, Cho JH, McClarty S, Baxter D, et al. (2012) Comparing the MicroRNA spectrum between serum and plasma. PLoS One 7: e41561.
    • (2012) PLoS One , vol.7
    • Wang, K.1    Yuan, Y.2    Cho, J.H.3    McClarty, S.4    Baxter, D.5
  • 44
    • 77953192081 scopus 로고    scopus 로고
    • Plasma microRNAs are promising novel biomarkers for early detection of colorectal cancer
    • Huang Z, Huang D, Ni S, Peng Z, Sheng W, et al. (2010) Plasma microRNAs are promising novel biomarkers for early detection of colorectal cancer. Int J Cancer 127: 118-126.
    • (2010) Int J Cancer , vol.127 , pp. 118-126
    • Huang, Z.1    Huang, D.2    Ni, S.3    Peng, Z.4    Sheng, W.5
  • 45
    • 79953178293 scopus 로고    scopus 로고
    • Plasma microRNAs as potential biomarkers for non-small-cell lung cancer
    • Shen J, Todd NW, Zhang H, Yu L, Lingxiao X, et al. (2011) Plasma microRNAs as potential biomarkers for non-small-cell lung cancer. Lab Invest 91: 579-587.
    • (2011) Lab Invest , vol.91 , pp. 579-587
    • Shen, J.1    Todd, N.W.2    Zhang, H.3    Yu, L.4    Lingxiao, X.5
  • 46
    • 84896272376 scopus 로고    scopus 로고
    • Expression of miR-16 is not a suitable reference for analysis of serum microRNAs in melanoma patients
    • Friedman EB, Shang S, Fleming NH, Vega-Saenz de Miera E, Hernando E, et al. (2012) Expression of miR-16 is not a suitable reference for analysis of serum microRNAs in melanoma patients. J Biomed Sci and Eng 5: 647-651.
    • (2012) J Biomed Sci and Eng , vol.5 , pp. 647-651
    • Friedman, E.B.1    Shang, S.2    Fleming, N.H.3    Vega-Saenz De Miera, E.4    Hernando, E.5
  • 48
    • 84870451897 scopus 로고    scopus 로고
    • Circulating MicroRNAs as potential risk biomarkers for hematoma enlargement after intracerebral hemorrhage
    • Zheng HW, Wang YL, Lin JX, Li N, Zhao XQ, et al. (2012) Circulating MicroRNAs as potential risk biomarkers for hematoma enlargement after intracerebral hemorrhage. CNS Neurosci Ther 18: 1003-1011.
    • (2012) CNS Neurosci Ther , vol.18 , pp. 1003-1011
    • Zheng, H.W.1    Wang, Y.L.2    Lin, J.X.3    Li, N.4    Zhao, X.Q.5
  • 49
    • 84859892863 scopus 로고    scopus 로고
    • MicroRNA profiling: Approaches and considerations
    • Pritchard CC, Cheng HH, Tewari M (2012) MicroRNA profiling: approaches and considerations. Nat Rev Genet 13: 358-369.
    • (2012) Nat Rev Genet , vol.13 , pp. 358-369
    • Pritchard, C.C.1    Cheng, H.H.2    Tewari, M.3
  • 50
    • 46949098160 scopus 로고    scopus 로고
    • Comparison of normalization methods with microRNA microarray
    • Hua YJ, Tu K, Tang ZY, Li YX, Xiao HS (2008) Comparison of normalization methods with microRNA microarray. Genomics 92: 122-128.
    • (2008) Genomics , vol.92 , pp. 122-128
    • Hua, Y.J.1    Tu, K.2    Tang, Z.Y.3    Li, Y.X.4    Xiao, H.S.5
  • 51
    • 84873114749 scopus 로고    scopus 로고
    • Data submission and quality in microarray-based microRNA profiling
    • Witwer KW (2013) Data submission and quality in microarray-based microRNA profiling. Clin Chem 59: 392-400.
    • (2013) Clin Chem , vol.59 , pp. 392-400
    • Witwer, K.W.1


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