메뉴 건너뛰기




Volumn 59, Issue 2, 2013, Pages 392-400

Data submission and quality in microarray-based MicroRNA profiling

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

EID: 84873114749     PISSN: 00099147     EISSN: 15308561     Source Type: Journal    
DOI: 10.1373/clinchem.2012.193813     Document Type: Article
Times cited : (37)

References (39)
  • 1
    • 33846563409 scopus 로고    scopus 로고
    • Why most published research findings are false
    • Ioannidis JP. Why most published research findings are false. PLoS Med 2005;2:e124.
    • (2005) PLoS Med , vol.2
    • Ioannidis, J.P.1
  • 2
    • 84859169880 scopus 로고    scopus 로고
    • Drug development: Raise standards for preclinical cancer research
    • Begley CG, Ellis LM. Drug development: raise standards for preclinical cancer research. Nature 2012;483:531-3.
    • (2012) Nature , vol.483 , pp. 531-533
    • Begley, C.G.1    Ellis, L.M.2
  • 3
    • 80055088241 scopus 로고    scopus 로고
    • Believe it or not: How much can we rely on published data on potential drug targets?
    • Prinz F, Schlange T, Asadullah K. Believe it or not: how much can we rely on published data on potential drug targets? Nat Rev Drug Discov 2011;10:712.
    • (2011) Nat Rev Drug Discov , vol.10 , pp. 712
    • Prinz, F.1    Schlange, T.2    Asadullah, K.3
  • 4
    • 80355136445 scopus 로고    scopus 로고
    • Willingness to share research data is related to the strength of the evidence and the quality of reporting of statistical results
    • Wicherts JM, Bakker M, Molenaar D. Willingness to share research data is related to the strength of the evidence and the quality of reporting of statistical results. PloS One 2011;6:e26828.
    • (2011) PloS One , vol.6
    • Wicherts, J.M.1    Bakker, M.2    Molenaar, D.3
  • 5
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 2001;29:365-71.
    • (2001) Nat Genet , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5    Stoeckert, C.6
  • 6
    • 67649354569 scopus 로고    scopus 로고
    • Minimum Information about a Microarray Experiment (MIAME)-successes, failures, challenges
    • Brazma A. Minimum Information About a Microarray Experiment (MIAME)-successes, failures, challenges. ScientificWorldJournal 2009;9: 420-3.
    • (2009) ScientificWorldJournal , vol.9 , pp. 420-423
    • Brazma, A.1
  • 7
    • 0036081355 scopus 로고    scopus 로고
    • Gene expression omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002;30:207-10.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 8
    • 0347122079 scopus 로고    scopus 로고
    • CIBEX: Center for information biology gene expression database
    • Ikeo K, Ishi-i J, Tamura T, Gojobori T, Tateno Y. CIBEX: center for information biology gene expression database. C R Biol 2003;326:1079-82.
    • (2003) C R Biol , vol.326 , pp. 1079-1082
    • Ikeo, K.1    Ishi-I, J.2    Tamura, T.3    Gojobori, T.4    Tateno, Y.5
  • 11
    • 77952522153 scopus 로고    scopus 로고
    • MiRNAs as molecular biomarkers of cancer
    • Fabbri M. miRNAs as molecular biomarkers of cancer. Expert Rev Mol Diagn 2010;10:435-44.
    • (2010) Expert Rev Mol Diagn , vol.10 , pp. 435-444
    • Fabbri, M.1
  • 12
    • 77957197569 scopus 로고    scopus 로고
    • Oncogenic microRNAs (OncomiRs) as a new class of cancer biomarkers
    • Krutovskikh VA, Herceg Z. Oncogenic microRNAs (OncomiRs) as a new class of cancer biomarkers. Bioessays 2010;32:894 -904.
    • (2010) Bioessays , vol.32 , pp. 894-904
    • Krutovskikh, V.A.1    Herceg, Z.2
  • 13
    • 84856065347 scopus 로고    scopus 로고
    • Expression profiling of human immune cell subsets identifies miRNAmRNA regulatory relationships correlated with cell type specific expression
    • Allantaz F, Cheng DT, Bergauer T, Ravindran P, Rossier MF, Ebeling M, et al. Expression profiling of human immune cell subsets identifies miRNAmRNA regulatory relationships correlated with cell type specific expression. PLoS One 2012;7: e29979.
    • (2012) PLoS One , vol.7
    • Allantaz, F.1    Cheng, D.T.2    Bergauer, T.3    Ravindran, P.4    Rossier, M.F.5    Ebeling, M.6
  • 15
    • 80053224886 scopus 로고    scopus 로고
    • MiR-132, an experiencedependent microRNA, is essential for visual cortex plasticity
    • Mellios N, Sugihara H, Castro J, Banerjee A, Le C, Kumar A, et al. miR-132, an experiencedependent microRNA, is essential for visual cortex plasticity. Nat Neurosci 2011;14:1240 -2.
    • (2011) Nat Neurosci , vol.14 , pp. 1240-1242
    • Mellios, N.1    Sugihara, H.2    Castro, J.3    Banerjee, A.4    Le Kumar, C.A.5
  • 16
    • 84861173228 scopus 로고    scopus 로고
    • Stable changes in CD4+ T-lymphocyte microRNA expression following exposure to HIV-1
    • Bignami F, Pilotti E, Bertoncelli L, Ronzi P, Gulli M, Marmiroli N, et al. Stable changes in CD4+ T-lymphocyte microRNA expression following exposure to HIV-1. Blood 2012;119:6259-67.
    • (2012) Blood , vol.119 , pp. 6259-6267
    • Bignami, F.1    Pilotti, E.2    Bertoncelli, L.3    Ronzi, P.4    Gulli, M.5    Marmiroli, N.6
  • 17
    • 84863344858 scopus 로고    scopus 로고
    • Downregulation of six microRNAs is associated with advanced stage, lymph node metastasis and poor prognosis in small cell carcinoma of the cervix
    • Huang L, Lin JX, Yu YH, Zhang MY, Wang HY, Zheng M. Downregulation of six microRNAs is associated with advanced stage, lymph node metastasis and poor prognosis in small cell carcinoma of the cervix. PLoS One 2012;7: e33762.
    • (2012) PLoS One , vol.7
    • Huang, L.1    Lin, J.X.2    Yu, Y.H.3    Zhang, M.Y.4    Wang, H.Y.5    Zheng, M.6
  • 18
    • 79960883949 scopus 로고    scopus 로고
    • Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1)
    • Gupta A, Nagilla P, Le HS, Bunney C, Zych C, Thalamuthu A, et al. Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1). PLoS One 2011; 6:e22730.
    • (2011) PLoS One , vol.6
    • Gupta, A.1    Nagilla, P.2    Le Bunney, H.S.C.3    Zych, C.4    Thalamuthu, A.5
  • 19
    • 84859346742 scopus 로고    scopus 로고
    • HTLV-1 tax mediated downregulation of miRNAs associated with chromatin remodeling factors in T cells with stably integrated viral promoter
    • Rahman S, Quann K, Pandya D, Singh S, Khan ZK, Jain P. HTLV-1 tax mediated downregulation of miRNAs associated with chromatin remodeling factors in T cells with stably integrated viral promoter. PLoS One 2012;7:e34490.
    • (2012) PLoS One , vol.7
    • Rahman, S.1    Quann, K.2    Pandya, D.3    Singh, S.4    Khan, Z.K.5    Jain, P.6
  • 20
    • 84858433876 scopus 로고    scopus 로고
    • Identification of XMRV infectionassociated microRNAs in four cell types in culture
    • Mohan KV, Devadas K, Sainath Rao S, Hewlett I, Atreya C. Identification of XMRV infectionassociated microRNAs in four cell types in culture. PLoS One 2012;7:e32853.
    • (2012) PLoS One , vol.7
    • Mohan, K.V.1    Devadas, K.2    Sainath Rao, S.3    Hewlett, I.4    Atreya, C.5
  • 21
    • 84868115449 scopus 로고    scopus 로고
    • MiRNA profiles of monocyte-lineage cells are consistent with complicated roles in HIV-1 restriction
    • Sisk JM, Clements JE, Witwer KW. miRNA profiles of monocyte-lineage cells are consistent with complicated roles in HIV-1 restriction. Viruses 2012;4:1844-64.
    • (2012) Viruses , vol.4 , pp. 1844-1864
    • Sisk, J.M.1    Clements, J.E.2    Witwer, K.W.3
  • 22
    • 84863514646 scopus 로고    scopus 로고
    • Evidence for miRNA expression differences of HIV-1-positive, treatment-naive patients and elite suppressors: A re-analysis
    • Witwer KW, Clements JE. Evidence for miRNA expression differences of HIV-1-positive, treatment-naive patients and elite suppressors: a re-analysis. Blood 2012;119:6395-6.
    • (2012) Blood , vol.119 , pp. 6395-6396
    • Witwer, K.W.1    Clements, J.E.2
  • 23
    • 84868109041 scopus 로고    scopus 로고
    • A plasma microRNA signature of acute lentiviral infection: Biomarkers of CNS disease
    • Witwer KW, Sarbanes SL, Liu J, Clements JE. A plasma microRNA signature of acute lentiviral infection: biomarkers of CNS disease. AIDS 2011; 204:1104 -14.
    • (2011) AIDS , vol.204 , pp. 1104-1114
    • Witwer, K.W.1    Sarbanes, S.L.2    Liu, J.3    Clements, J.E.4
  • 24
    • 84855570512 scopus 로고    scopus 로고
    • Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients
    • Witwer KW, Watson AK, Blankson JN, Clements JE. Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients. Retrovirology 2012;9:5.
    • (2012) Retrovirology , vol.9 , pp. 5
    • Witwer, K.W.1    Watson, A.K.2    Blankson, J.N.3    Clements, J.E.4
  • 25
    • 80055075303 scopus 로고    scopus 로고
    • Profile of microRNAs differentially produced in hearts from patients with hypertrophic cardiomyopathy and sarcomeric mutations
    • Palacin M, Reguero JR, Martin M, Diaz Molina B, Moris C, Alvarez V, Coto E. Profile of microRNAs differentially produced in hearts from patients with hypertrophic cardiomyopathy and sarcomeric mutations. Clin Chem 2011;57:1614-6.
    • (2011) Clin Chem , vol.57 , pp. 1614-1616
    • Palacin, M.1    Reguero, J.R.2    Martin, M.3    Diaz Molina, B.4    Moris, C.5    Alvarez, V.6    Coto, E.7
  • 26
    • 84860448293 scopus 로고    scopus 로고
    • Genome-wide profiling identified a set of miRNAs that are differentially expressed in glioblastoma stem cells and normal neural stem cells
    • Lang MF, Yang S, Zhao C, Sun G, Murai K, Wu X, et al. Genome-wide profiling identified a set of miRNAs that are differentially expressed in glioblastoma stem cells and normal neural stem cells. PLoS One 2012;7:e36248.
    • (2012) PLoS One , vol.7
    • Lang, M.F.1    Yang, S.2    Zhao, C.3    Sun, G.4    Murai, K.5    Wu, X.6
  • 27
    • 84863269138 scopus 로고    scopus 로고
    • Up-regulation of a HOXA-PBX3 homeoboxgene signature following down-regulation of miR-181 is associated with adverse prognosis in patients with cytogenetically abnormal AML
    • Li Z, Huang H, Li Y, Jiang X, Chen P, Arnovitz S, et al. Up-regulation of a HOXA-PBX3 homeoboxgene signature following down-regulation of miR-181 is associated with adverse prognosis in patients with cytogenetically abnormal AML. Blood 2012;119:2314 -24.
    • (2012) Blood , vol.119 , pp. 2314-2324
    • Li, Z.1    Huang, H.2    Li, Y.3    Jiang, X.4    Chen, P.5    Arnovitz, S.6
  • 28
    • 84857154347 scopus 로고    scopus 로고
    • MicroRNA 146a (miR-146a) is over-expressed during prion disease and modulates the innate immune response and the microglial activation state
    • Saba R, Gushue S, Huzarewich RL, Manguiat K, Medina S, Robertson C, Booth SA. MicroRNA 146a (miR-146a) is over-expressed during prion disease and modulates the innate immune response and the microglial activation state. PLoS One 2012;7:e30832.
    • (2012) PLoS One , vol.7
    • Saba, R.1    Gushue, S.2    Huzarewich, R.L.3    Manguiat, K.4    Medina, S.5    Robertson, C.6    Booth, S.A.7
  • 29
    • 84861348585 scopus 로고    scopus 로고
    • Connective tissue growth factor modulates oral squamous cell carcinoma invasion by activating a miR-504/FOXP1 signalling
    • Yang MH, Lin BR, Chang CH, Chen ST, Lin SK, Kuo MY, et al. Connective tissue growth factor modulates oral squamous cell carcinoma invasion by activating a miR-504/FOXP1 signalling. Oncogene 2012;31:2401-11.
    • (2012) Oncogene , vol.31 , pp. 2401-2411
    • Yang, M.H.1    Lin, B.R.2    Chang, C.H.3    Chen, S.T.4    Lin, S.K.5    Kuo, M.Y.6
  • 30
    • 84865832710 scopus 로고    scopus 로고
    • Retraction: Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1)
    • Retraction: Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1). PLoS One 2012;7(8).
    • (2012) PLoS One , vol.7 , pp. 8
  • 31
    • 84856904325 scopus 로고    scopus 로고
    • Have we produced enough results yet, Sir?
    • Moore A. Have we produced enough results yet, Sir? BioEssays 2012;34:163.
    • (2012) BioEssays , vol.34 , pp. 163
    • Moore, A.1
  • 32
    • 84855955131 scopus 로고    scopus 로고
    • MicroRNA-135a contributes to the development of portal vein tumor thrombus by promoting metastasis in hepatocellular carcinoma
    • Liu S, Guo W, Shi J, Li N, Yu X, Xue J, et al. MicroRNA-135a contributes to the development of portal vein tumor thrombus by promoting metastasis in hepatocellular carcinoma. J Hepatol 2012;56:389 -96.
    • (2012) J Hepatol , vol.56 , pp. 389-396
    • Liu, S.1    Guo, W.2    Shi, J.3    Li, N.4    Yu, X.5    Xue, J.6
  • 34
    • 80051728762 scopus 로고    scopus 로고
    • Efficient non-viral reprogramming of myoblasts to stemness with a single small molecule to generate cardiac progenitor cells
    • Pasha Z, Haider H, Ashraf M. Efficient non-viral reprogramming of myoblasts to stemness with a single small molecule to generate cardiac progenitor cells. PLoS One 2011;6:e23667.
    • (2011) PLoS One , vol.6
    • Pasha, Z.1    Haider, H.2    Ashraf, M.3
  • 35
    • 80055061481 scopus 로고    scopus 로고
    • MicroRNA-150 regulates mobilization and migration of bone marrow-derived mononuclear cells by targeting Cxcr4
    • Tano N, Kim HW, Ashraf M. microRNA-150 regulates mobilization and migration of bone marrow-derived mononuclear cells by targeting Cxcr4. PLoS One 2011;6:e23114.
    • (2011) PLoS One , vol.6
    • Tano, N.1    Kim, H.W.2    Ashraf, M.3
  • 36
    • 84863266375 scopus 로고    scopus 로고
    • MiR-194 regulates chondrogenic differentiation of human adiposederived stem cells by targeting Sox5
    • Xu J, Kang Y, Liao WM, Yu L. MiR-194 regulates chondrogenic differentiation of human adiposederived stem cells by targeting Sox5. PLoS One 2012;7:e31861.
    • (2012) PLoS One , vol.7
    • Xu, J.1    Kang, Y.2    Liao, W.M.3    Yu, L.4
  • 37
    • 84859565517 scopus 로고    scopus 로고
    • MicroRNAs overexpressed in growth-restricted rat skeletal muscles regulate the glucose transport in cell culture targeting central TGF-beta factor SMAD4
    • Raychaudhuri S. MicroRNAs overexpressed in growth-restricted rat skeletal muscles regulate the glucose transport in cell culture targeting central TGF-beta factor SMAD4. PLoS One 2012; 7:e34596.
    • (2012) PLoS One , vol.7
    • Raychaudhuri, S.1
  • 39
    • 84859480864 scopus 로고    scopus 로고
    • Clinical outcome prediction by microRNAs in human cancer: A systematic review
    • Nair VS, Maeda LS, Ioannidis JP. Clinical outcome prediction by microRNAs in human cancer: a systematic review. J Natl Cancer Inst 2012;104:528-40.
    • (2012) J Natl Cancer Inst , vol.104 , pp. 528-540
    • Nair, V.S.1    Maeda, L.S.2    Ioannidis, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.