-
1
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. 2012. An integrated map of genetic variation from 1, 092 human genomes. Nature 491:56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Abecasis, G.R.1
Auton, A.2
Brooks, L.D.3
DePristo, M.A.4
Durbin, R.M.5
Handsaker, R.E.6
Kang, H.M.7
Marth, G.T.8
McVean, G.A.9
-
2
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. 2010. A method and server for predicting damaging missense mutations. Nat Methods 7:248-249.
-
(2010)
Nat Methods
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
Ramensky, V.E.4
Gerasimova, A.5
Bork, P.6
Kondrashov, A.S.7
Sunyaev, S.R.8
-
4
-
-
0037370709
-
Efficient transduction of primary human B lymphocytes and nondividing myeloma B cells with HIV-1-derived lentiviral vectors
-
Bovia F, Salmon P, Matthes T, Kvell K, Nguyen TH, Werner-Favre C, Barnet M, Nagy M, Leuba F, Arrighi JF, Piquet V, Trono D, et al. 2003. Efficient transduction of primary human B lymphocytes and nondividing myeloma B cells with HIV-1-derived lentiviral vectors. Blood 101:1727-1733.
-
(2003)
Blood
, vol.101
, pp. 1727-1733
-
-
Bovia, F.1
Salmon, P.2
Matthes, T.3
Kvell, K.4
Nguyen, T.H.5
Werner-Favre, C.6
Barnet, M.7
Nagy, M.8
Leuba, F.9
Arrighi, J.F.10
Piquet, V.11
Trono, D.12
-
5
-
-
84896136290
-
Gas chromatography-mass spectrometry
-
In: Chalmers RA, Lawson AM, editors. London, UK: Chapman and Hall.
-
Chalmers RA, Lawson AM. 1982. Gas chromatography-mass spectrometry. In: Chalmers RA, Lawson AM, editors. Organic acids in man. Analytical chemistry, biochemistry and diagnosis of the organic acidurias. London, UK: Chapman and Hall. p 81-127.
-
(1982)
Organic acids in man. Analytical chemistry, biochemistry and diagnosis of the organic acidurias
, pp. 81-127
-
-
Chalmers, R.A.1
Lawson, A.M.2
-
6
-
-
0002977005
-
Maple syrup urine disease (branched-chain ketoaciduria)
-
In: Scriver CR, Beuadet AL, Sly WS, Valle D, editors. New York, NY: McGrawHill.
-
Chuang DT, Shih VE. 2001. Maple syrup urine disease (branched-chain ketoaciduria). In: Scriver CR, Beuadet AL, Sly WS, Valle D, editors. The metabolic & molecular bases of inherited disease, 8e. New York, NY: McGrawHill. p 1971-2006.
-
(2001)
The metabolic & molecular bases of inherited disease, 8e
, pp. 1971-2006
-
-
Chuang, D.T.1
Shih, V.E.2
-
7
-
-
0029086245
-
Expression and characterization of branched-chain alpha-ketoacid dehydrogenase kinase from the rat. Is it a histidine-protein kinase
-
Davie JR, Wynn RM, Meng M, Huang YS, Aalund G, Chuang DT, Lau KS. 1995. Expression and characterization of branched-chain alpha-ketoacid dehydrogenase kinase from the rat. Is it a histidine-protein kinase? J Biol Chem 270:19861-19867.
-
(1995)
J Biol Chem
, vol.270
, pp. 19861-19867
-
-
Davie, J.R.1
Wynn, R.M.2
Meng, M.3
Huang, Y.S.4
Aalund, G.5
Chuang, D.T.6
Lau, K.S.7
-
8
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43:491-498.
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
del Angel, G.8
Rivas, M.A.9
Hanna, M.10
McKenna, A.11
Fennell, T.J.12
-
9
-
-
48149106687
-
Autistic traits and cognitive performance in young people with mild intellectual impairment
-
Harris JM, Best CS, Moffat VJ, Spencer MD, Philip RC, Power MJ, Johnstone EC. 2008. Autistic traits and cognitive performance in young people with mild intellectual impairment. J Autism Dev Disord 38:1241-1249.
-
(2008)
J Autism Dev Disord
, vol.38
, pp. 1241-1249
-
-
Harris, J.M.1
Best, C.S.2
Moffat, V.J.3
Spencer, M.D.4
Philip, R.C.5
Power, M.J.6
Johnstone, E.C.7
-
10
-
-
0345735297
-
Mechanisms responsible for regulation of branched-chain amino acid catabolism
-
Harris RA, Joshi M, Jeoung NH. 2004. Mechanisms responsible for regulation of branched-chain amino acid catabolism. Biochem Biophys Res Commun 313:391-396.
-
(2004)
Biochem Biophys Res Commun
, vol.313
, pp. 391-396
-
-
Harris, R.A.1
Joshi, M.2
Jeoung, N.H.3
-
11
-
-
20344373417
-
Overview of the molecular and biochemical basis of branched-chain amino acid catabolism
-
Harris RA, Joshi M, Jeoung NH, Obayashi M. 2005. Overview of the molecular and biochemical basis of branched-chain amino acid catabolism. J Nutr 135:1527S-1530S.
-
(2005)
J Nutr
, vol.135
-
-
Harris, R.A.1
Joshi, M.2
Jeoung, N.H.3
Obayashi, M.4
-
13
-
-
0033136244
-
Down-regulation of rat mitochondrial branched-chain 2-oxoacid dehydrogenase kinase gene expression by glucocorticoids
-
Huang YS, Chuang DT. 1999. Down-regulation of rat mitochondrial branched-chain 2-oxoacid dehydrogenase kinase gene expression by glucocorticoids. Biochem J 339:503-510.
-
(1999)
Biochem J
, vol.339
, pp. 503-510
-
-
Huang, Y.S.1
Chuang, D.T.2
-
14
-
-
73649126526
-
Branched-chain amino acid metabolon: interaction of glutamate dehydrogenase with the mitochondrial branched-chain aminotransferase (BCATm)
-
Islam MM, Nautiyal M, Wynn RM, Mobley JA, Chuang DT, Hutson SM. 2010. Branched-chain amino acid metabolon: interaction of glutamate dehydrogenase with the mitochondrial branched-chain aminotransferase (BCATm). J Biol Chem 285:265-276.
-
(2010)
J Biol Chem
, vol.285
, pp. 265-276
-
-
Islam, M.M.1
Nautiyal, M.2
Wynn, R.M.3
Mobley, J.A.4
Chuang, D.T.5
Hutson, S.M.6
-
16
-
-
33751071072
-
Impaired growth and neurological abnormalities in branched-chain alpha-keto acid dehydrogenase kinase-deficient mice
-
Joshi MA, Jeoung NH, Obayashi M, Hattab EM, Brocken EG, Liechty EA, Kubek MJ, Vattem KM, Wek RC, Harris RA. 2006. Impaired growth and neurological abnormalities in branched-chain alpha-keto acid dehydrogenase kinase-deficient mice. Biochem J 400:153-162.
-
(2006)
Biochem J
, vol.400
, pp. 153-162
-
-
Joshi, M.A.1
Jeoung, N.H.2
Obayashi, M.3
Hattab, E.M.4
Brocken, E.G.5
Liechty, E.A.6
Kubek, M.J.7
Vattem, K.M.8
Wek, R.C.9
Harris, R.A.10
-
17
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P, Henikoff S, Ng PC. 2009. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4:1073-1081.
-
(2009)
Nat Protoc
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
18
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
19
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
20
-
-
3543034577
-
Cross-talk between thiamin diphosphate binding and phosphorylation loop conformation in human branched-chain alpha-keto acid decarboxylase/dehydrogenase
-
Li J, Wynn RM, Machius M, Chuang JL, Karthikeyan S, Tomchick DR, Chuang DT. 2004. Cross-talk between thiamin diphosphate binding and phosphorylation loop conformation in human branched-chain alpha-keto acid decarboxylase/dehydrogenase. J Biol Chem 279:32968-32978.
-
(2004)
J Biol Chem
, vol.279
, pp. 32968-32978
-
-
Li, J.1
Wynn, R.M.2
Machius, M.3
Chuang, J.L.4
Karthikeyan, S.5
Tomchick, D.R.6
Chuang, D.T.7
-
21
-
-
67651005823
-
Protein phosphatase 2cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells
-
Lu G, Sun H, She P, Youn JY, Warburton S, Ping P, Vondriska TM, Cai H, Lynch CJ, Wang Y. 2009. Protein phosphatase 2cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells. J Clin Invest 119:1678-1687.
-
(2009)
J Clin Invest
, vol.119
, pp. 1678-1687
-
-
Lu, G.1
Sun, H.2
She, P.3
Youn, J.Y.4
Warburton, S.5
Ping, P.6
Vondriska, T.M.7
Cai, H.8
Lynch, C.J.9
Wang, Y.10
-
22
-
-
0035949483
-
Structure of rat BCKD kinase: nucleotide-induced domain communication in a mitochondrial protein kinase
-
Machius M, Chuang JL, Wynn RM, Tomchick DR, Chuang DT. 2001. Structure of rat BCKD kinase: nucleotide-induced domain communication in a mitochondrial protein kinase. Proc Natl Acad Sci USA 98:11218-11223.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11218-11223
-
-
Machius, M.1
Chuang, J.L.2
Wynn, R.M.3
Tomchick, D.R.4
Chuang, D.T.5
-
23
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20:1297-1303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
DePristo, M.A.11
-
24
-
-
84864486576
-
VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by next-generation sequencing
-
Web Server issue
-
Medina I, De Maria A, Bleda M, Salavert F, Alonso R, Gonzalez CY, Dopazo J. 2012. VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by next-generation sequencing. Nucleic Acids Res 40(Web Server issue):W54-W58.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Medina, I.1
De Maria, A.2
Bleda, M.3
Salavert, F.4
Alonso, R.5
Gonzalez, C.Y.6
Dopazo, J.7
-
25
-
-
84867687830
-
Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy
-
Novarino G, El-Fishawy P, Kayserili H, Meguid NA, Scott EM, Schroth J, Silhavy JL, Kara M, Khalil RO, Ben-Omran T, Ercan-SenciceK AG, Hashish AF, et al. 2012. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science 338:394-397.
-
(2012)
Science
, vol.338
, pp. 394-397
-
-
Novarino, G.1
El-Fishawy, P.2
Kayserili, H.3
Meguid, N.A.4
Scott, E.M.5
Schroth, J.6
Silhavy, J.L.7
Kara, M.8
Khalil, R.O.9
Ben-Omran, T.10
Ercan-SenciceK, A.G.11
Hashish, A.F.12
-
26
-
-
84873083880
-
A novel regulatory defect in the branched-chain alpha-keto acid dehydrogenase complex due to a mutation in the PPM1K gene causes a mild variant phenotype of maple syrup urine disease
-
Oyarzabal A, Martinez-Pardo M, Merinero B, Navarrete R, Desviat LR, Ugarte M, Rodriguez-Pombo P. 2013. A novel regulatory defect in the branched-chain alpha-keto acid dehydrogenase complex due to a mutation in the PPM1K gene causes a mild variant phenotype of maple syrup urine disease. Hum Mutat 34:355-362.
-
(2013)
Hum Mutat
, vol.34
, pp. 355-362
-
-
Oyarzabal, A.1
Martinez-Pardo, M.2
Merinero, B.3
Navarrete, R.4
Desviat, L.R.5
Ugarte, M.6
Rodriguez-Pombo, P.7
-
27
-
-
0022311019
-
Regulation of mammalian pyruvate and branched-chain alpha-keto acid dehydrogenase complexes by phosphorylation-dephosphorylation
-
Reed LJ, Damuni Z, Merryfield ML. 1985. Regulation of mammalian pyruvate and branched-chain alpha-keto acid dehydrogenase complexes by phosphorylation-dephosphorylation. Curr Top Cell Regul 27:41-49.
-
(1985)
Curr Top Cell Regul
, vol.27
, pp. 41-49
-
-
Reed, L.J.1
Damuni, Z.2
Merryfield, M.L.3
-
28
-
-
84869413146
-
Oxidative stress and apoptosis in homocystinuria patients with genetic remethylation defects
-
Richard E, Desviat LR, Ugarte M, Perez B. 2013. Oxidative stress and apoptosis in homocystinuria patients with genetic remethylation defects. J Cell Biochem 114:183-191.
-
(2013)
J Cell Biochem
, vol.114
, pp. 183-191
-
-
Richard, E.1
Desviat, L.R.2
Ugarte, M.3
Perez, B.4
-
29
-
-
70350741367
-
Genetic and cellular studies of oxidative stress in methylmalonic aciduria (MMA) cobalamin deficiency type C (cblC) with homocystinuria (MMACHC)
-
Richard E, Jorge-Finnigan A, Garcia-Villoria J, Merinero B, Desviat LR, Gort L, Briones P, Leal F, Perez-Cerda C, Ribes A, Ugarte M, Perez B. 2009. Genetic and cellular studies of oxidative stress in methylmalonic aciduria (MMA) cobalamin deficiency type C (cblC) with homocystinuria (MMACHC). Hum Mutat 30:1558-1566.
-
(2009)
Hum Mutat
, vol.30
, pp. 1558-1566
-
-
Richard, E.1
Jorge-Finnigan, A.2
Garcia-Villoria, J.3
Merinero, B.4
Desviat, L.R.5
Gort, L.6
Briones, P.7
Leal, F.8
Perez-Cerda, C.9
Ribes, A.10
Ugarte, M.11
Perez, B.12
-
31
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. 2001. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29:308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
32
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, et al. 2005. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15:1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
Weinstock, G.M.11
Wilson, R.K.12
-
33
-
-
65649140439
-
Acrodermatitis enteropathica-like eruption in metabolic disorders: acrodermatitis dysmetabolica is proposed as a better term
-
Tabanlioglu D, Ersoy-Evans S, Karaduman A. 2009. Acrodermatitis enteropathica-like eruption in metabolic disorders: acrodermatitis dysmetabolica is proposed as a better term. Pediatr Dermatol 26:150-154.
-
(2009)
Pediatr Dermatol
, vol.26
, pp. 150-154
-
-
Tabanlioglu, D.1
Ersoy-Evans, S.2
Karaduman, A.3
-
34
-
-
0034730642
-
Tetrameric assembly and conservation in the ATP-binding domain of rat branched-chain alpha-ketoacid dehydrogenase kinase
-
Wynn RM, Chuang JL, Cote CD, Chuang DT. 2000. Tetrameric assembly and conservation in the ATP-binding domain of rat branched-chain alpha-ketoacid dehydrogenase kinase. J Biol Chem 275:30512-30519.
-
(2000)
J Biol Chem
, vol.275
, pp. 30512-30519
-
-
Wynn, R.M.1
Chuang, J.L.2
Cote, C.D.3
Chuang, D.T.4
-
35
-
-
9944259021
-
Molecular mechanism for regulation of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase complex by phosphorylation
-
Wynn RM, Kato M, Machius M, Chuang JL, Li J, Tomchick DR, Chuang DT. 2004. Molecular mechanism for regulation of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase complex by phosphorylation. Structure 12:2185-2196.
-
(2004)
Structure
, vol.12
, pp. 2185-2196
-
-
Wynn, R.M.1
Kato, M.2
Machius, M.3
Chuang, J.L.4
Li, J.5
Tomchick, D.R.6
Chuang, D.T.7
-
36
-
-
84863386821
-
Structural and biochemical characterization of human mitochondrial branched-chain alpha-ketoacid dehydrogenase phosphatase
-
Wynn RM, Li J, Brautigam CA, Chuang JL, Chuang DT. 2012. Structural and biochemical characterization of human mitochondrial branched-chain alpha-ketoacid dehydrogenase phosphatase. J Biol Chem 287:9178-9192.
-
(2012)
J Biol Chem
, vol.287
, pp. 9178-9192
-
-
Wynn, R.M.1
Li, J.2
Brautigam, C.A.3
Chuang, J.L.4
Chuang, D.T.5
-
37
-
-
0030033642
-
Astrocyte leucine metabolism: significance of branched-chain amino acid transamination
-
Yudkoff M, Daikhin Y, Grunstein L, Nissim I, Stern J, Pleasure D. 1996. Astrocyte leucine metabolism: significance of branched-chain amino acid transamination. J Neurochem 66:378-385.
-
(1996)
J Neurochem
, vol.66
, pp. 378-385
-
-
Yudkoff, M.1
Daikhin, Y.2
Grunstein, L.3
Nissim, I.4
Stern, J.5
Pleasure, D.6
-
38
-
-
84863622578
-
Tissue-specific and nutrient regulation of the branched-chain alpha-keto acid dehydrogenase phosphatase, protein phosphatase 2Cm (PP2Cm)
-
Zhou M, Lu G, Gao C, Wang Y, Sun H. 2012. Tissue-specific and nutrient regulation of the branched-chain alpha-keto acid dehydrogenase phosphatase, protein phosphatase 2Cm (PP2Cm). J Biol Chem 287:23397-23406.
-
(2012)
J Biol Chem
, vol.287
, pp. 23397-23406
-
-
Zhou, M.1
Lu, G.2
Gao, C.3
Wang, Y.4
Sun, H.5
|