메뉴 건너뛰기




Volumn 116, Issue 4, 2014, Pages 942-954

A novel and rapid loop-mediated isothermal amplification assay for the specific detection of Verticillium dahliae

Author keywords

Loop mediated isothermal amplification; Nested PCR; Olive; RAPD marker; Soilborne; Verticillium dahliae

Indexed keywords

AGRICULTURE; DNA; FUNGI; ISOTHERMS; PATHOGENS; POLYMERASE CHAIN REACTION; PURIFICATION; SOIL SURVEYS; SOILS;

EID: 84896127397     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12407     Document Type: Article
Times cited : (45)

References (42)
  • 1
    • 84872336271 scopus 로고    scopus 로고
    • Visual detection of Potato Leafroll Virus by one-step reverse transcription loop-mediated isothermal amplification of DNA with hydroxynaphthol blue dye
    • Ahmadi, S., Almasi, M.A., Fatehi, F., Struik, P.C. and Moradi, A. (2013) Visual detection of Potato Leafroll Virus by one-step reverse transcription loop-mediated isothermal amplification of DNA with hydroxynaphthol blue dye. J Phytopathology 161, 120-124.
    • (2013) J Phytopathology , vol.161 , pp. 120-124
    • Ahmadi, S.1    Almasi, M.A.2    Fatehi, F.3    Struik, P.C.4    Moradi, A.5
  • 2
    • 84869144401 scopus 로고    scopus 로고
    • Assessment of performance ability of three diagnostic methods for detection of Potato Leafroll Virus (PLRV) using different visualizing systems
    • Almasi, M.A., Moradi, A., Nasiri, J., Karami, S. and Nasiri, M. (2012) Assessment of performance ability of three diagnostic methods for detection of Potato Leafroll Virus (PLRV) using different visualizing systems. Appl Biochem Biotechnol 168, 770-784.
    • (2012) Appl Biochem Biotechnol , vol.168 , pp. 770-784
    • Almasi, M.A.1    Moradi, A.2    Nasiri, J.3    Karami, S.4    Nasiri, M.5
  • 3
    • 84896128494 scopus 로고    scopus 로고
    • Detection of coat protein gene of the Potato Leafroll Virus by reverse transcription loop-mediated isothermal amplification
    • Almasi, M.A., Jafary, H., Moradi, A., Zand, N., Ojaghkandi, M.A. and Aghaei, S. (2013a) Detection of coat protein gene of the Potato Leafroll Virus by reverse transcription loop-mediated isothermal amplification. J Plant Pathol Microb 4, 156.
    • (2013) J Plant Pathol Microb , vol.4 , pp. 156
    • Almasi, M.A.1    Jafary, H.2    Moradi, A.3    Zand, N.4    Ojaghkandi, M.A.5    Aghaei, S.6
  • 4
    • 84896136715 scopus 로고    scopus 로고
    • Development and application of loop-mediated isothermal amplification assay for rapid detection of Fusarium oxysporum f. sp. lycopersici
    • Almasi, M.A., Moradi, A., Ojaghkandi, M.A. and Aghaei, S. (2013b) Development and application of loop-mediated isothermal amplification assay for rapid detection of Fusarium oxysporum f. sp. lycopersici. J Plant Pathol Microb 4, 177.
    • (2013) J Plant Pathol Microb , vol.4 , pp. 177
    • Almasi, M.A.1    Moradi, A.2    Ojaghkandi, M.A.3    Aghaei, S.4
  • 5
    • 84857511087 scopus 로고    scopus 로고
    • Development of an assay for rapid detection and quantification of Verticillium dahliae in soil
    • Bilodeau, G.J., Koike, S.T., Uribe, P. and Martin, F.N. (2012) Development of an assay for rapid detection and quantification of Verticillium dahliae in soil. Phytopathology 102, 331-343.
    • (2012) Phytopathology , vol.102 , pp. 331-343
    • Bilodeau, G.J.1    Koike, S.T.2    Uribe, P.3    Martin, F.N.4
  • 6
    • 0002092938 scopus 로고
    • Detection and differentiation by PCR of subspecific groups within two Verticillium species causing vascular wilts in herbaceous hosts
    • eds Schots, A., Dewey, F.M. and Oliver, R. Oxford: CAB International.
    • Carder, J.H., Morton, A., Tabrett, A.M. and Barbara, D.J. (1994) Detection and differentiation by PCR of subspecific groups within two Verticillium species causing vascular wilts in herbaceous hosts. In Modern Assays for Plant Pathogenic Fungi: Identification, Detection and Quantification. eds Schots, A., Dewey, F.M. and Oliver, R. pp. 91-97. Oxford: CAB International.
    • (1994) Modern Assays for Plant Pathogenic Fungi: Identification, Detection and Quantification , pp. 91-97
    • Carder, J.H.1    Morton, A.2    Tabrett, A.M.3    Barbara, D.J.4
  • 7
    • 33646350016 scopus 로고    scopus 로고
    • Molecular variability within and among Verticillium dahliae vegetative compatibility groups determined by fluorescent amplified fragment length polymorphism and polymerase chain reaction markers
    • Collado-Romero, M., Mercado-Blanco, J., Olivares-García, C., Valverde-Corredor, A. and Jiménez-Díaz, R.M. (2006) Molecular variability within and among Verticillium dahliae vegetative compatibility groups determined by fluorescent amplified fragment length polymorphism and polymerase chain reaction markers. Phytopathology 96, 485-495.
    • (2006) Phytopathology , vol.96 , pp. 485-495
    • Collado-Romero, M.1    Mercado-Blanco, J.2    Olivares-García, C.3    Valverde-Corredor, A.4    Jiménez-Díaz, R.M.5
  • 8
    • 65649105073 scopus 로고    scopus 로고
    • A PCR-based 'molecular tool box' for in planta differential detection of Verticillium dahliae vegetative compatibility groups infecting artichoke
    • Collado-Romero, M., Berbegal, M., Jiménez-Díaz, R.M., Armengol, J. and Mercado-Blanco, J. (2009) A PCR-based 'molecular tool box' for in planta differential detection of Verticillium dahliae vegetative compatibility groups infecting artichoke. Plant Pathol 58, 515-526.
    • (2009) Plant Pathol , vol.58 , pp. 515-526
    • Collado-Romero, M.1    Berbegal, M.2    Jiménez-Díaz, R.M.3    Armengol, J.4    Mercado-Blanco, J.5
  • 9
    • 77951938703 scopus 로고    scopus 로고
    • Verticillium wilt of olive in Turkey: a survey on disease importance, pathogen diversity and susceptibility of relevant olive cultivars
    • Dervis, S., Mercado-Blanco, J., Erten, L., Valverde-Corredor, A. and Pérez-Artés, E. (2010) Verticillium wilt of olive in Turkey: a survey on disease importance, pathogen diversity and susceptibility of relevant olive cultivars. Eur J Plant Pathol 127, 287-301.
    • (2010) Eur J Plant Pathol , vol.127 , pp. 287-301
    • Dervis, S.1    Mercado-Blanco, J.2    Erten, L.3    Valverde-Corredor, A.4    Pérez-Artés, E.5
  • 10
    • 84860295538 scopus 로고    scopus 로고
    • Direct loop-mediated isothermal amplification from Plasmodium chabaudi infected blood samples: inability to discriminate genomic and cDNA sequences
    • Ebbinghaus, P., von Samson-Himmelstjerna, G. and Krucken, J. (2012) Direct loop-mediated isothermal amplification from Plasmodium chabaudi infected blood samples: inability to discriminate genomic and cDNA sequences. Exp Parasitol 131, 40-44.
    • (2012) Exp Parasitol , vol.131 , pp. 40-44
    • Ebbinghaus, P.1    von Samson-Himmelstjerna, G.2    Krucken, J.3
  • 12
    • 11144224313 scopus 로고    scopus 로고
    • Verticillium wilt (Verticillium albo-atrum) on Medicago sativa (alfalfa) in Iran
    • Ghalandar, M., Clewes, E., Barbara, D.J., Zare, R. and Heydari, A. (2004) Verticillium wilt (Verticillium albo-atrum) on Medicago sativa (alfalfa) in Iran. Plant Pathol 53, 812.
    • (2004) Plant Pathol , vol.53 , pp. 812
    • Ghalandar, M.1    Clewes, E.2    Barbara, D.J.3    Zare, R.4    Heydari, A.5
  • 13
    • 77952581423 scopus 로고    scopus 로고
    • Rapid detection of Pseudomonas aeruginosa in mouse feces by colorimetric loop-mediated isothermal amplification
    • Goto, M., Shimada, K., Sato, A., Takahashi, E., Fukasawa, T., Takahashi, T., Ohka, S., Taniguchi, T. et al. (2010) Rapid detection of Pseudomonas aeruginosa in mouse feces by colorimetric loop-mediated isothermal amplification. J Microbiol Methods 81, 247-252.
    • (2010) J Microbiol Methods , vol.81 , pp. 247-252
    • Goto, M.1    Shimada, K.2    Sato, A.3    Takahashi, E.4    Fukasawa, T.5    Takahashi, T.6    Ohka, S.7    Taniguchi, T.8
  • 14
    • 0042567440 scopus 로고    scopus 로고
    • Quality of methods to quantify microsclerotia of Verticillium dahliae in soil
    • Goud, J.C. and Termorshuizen, A.J. (2003) Quality of methods to quantify microsclerotia of Verticillium dahliae in soil. Eur J Plant Pathol 109, 523-534.
    • (2003) Eur J Plant Pathol , vol.109 , pp. 523-534
    • Goud, J.C.1    Termorshuizen, A.J.2
  • 15
    • 84883751616 scopus 로고    scopus 로고
    • A comparison of real-time PCR protocols for the quantitative monitoring of asymptomatic olive infections by Verticillium dahliae pathotypes
    • Gramaje, D., Perez-Serrano, V., Montes-Borrego, M., Navas-Cortés, J.A., Jiménez-Díaz, R.M. and Landa, B.B. (2013) A comparison of real-time PCR protocols for the quantitative monitoring of asymptomatic olive infections by Verticillium dahliae pathotypes. Phytopathology 103, 1058-1068.
    • (2013) Phytopathology , vol.103 , pp. 1058-1068
    • Gramaje, D.1    Perez-Serrano, V.2    Montes-Borrego, M.3    Navas-Cortés, J.A.4    Jiménez-Díaz, R.M.5    Landa, B.B.6
  • 16
    • 82855163968 scopus 로고    scopus 로고
    • Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species
    • Inderbitzin, P., Bostock, R.M., Davis, R.M., Usami, T., Platt, H.W. and Subbarao, K.V. (2011) Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species. PLoS ONE 6, e28341.
    • (2011) PLoS ONE , vol.6
    • Inderbitzin, P.1    Bostock, R.M.2    Davis, R.M.3    Usami, T.4    Platt, H.W.5    Subbarao, K.V.6
  • 17
    • 1642370517 scopus 로고    scopus 로고
    • Comparison of media for recovery of Verticillium dahliae from soil
    • Kabir, Z., Bhat, R.G. and Subbarao, K.V. (2004) Comparison of media for recovery of Verticillium dahliae from soil. Plant Dis 88, 49-55.
    • (2004) Plant Dis , vol.88 , pp. 49-55
    • Kabir, Z.1    Bhat, R.G.2    Subbarao, K.V.3
  • 18
    • 63249099357 scopus 로고    scopus 로고
    • Mutants of Taq DNA polymerase resistant to PCR inhibitors allow DNA amplification from whole blood and crude soil samples
    • Kermekchiev, M.B., Kirilova, L.I., Vail, E.E. and Barnes, W.M. (2009) Mutants of Taq DNA polymerase resistant to PCR inhibitors allow DNA amplification from whole blood and crude soil samples. Nucleic Acids Res 37, e40.
    • (2009) Nucleic Acids Res , vol.37
    • Kermekchiev, M.B.1    Kirilova, L.I.2    Vail, E.E.3    Barnes, W.M.4
  • 20
    • 80052348695 scopus 로고    scopus 로고
    • The suitability of PCR-based techniques for detecting Verticillium dahliae in strawberry plants and soil
    • Kuchta, P., Jpcz, T. and Korbin, M. (2008) The suitability of PCR-based techniques for detecting Verticillium dahliae in strawberry plants and soil. J Fruit Ornam Plant Res 16, 295-304.
    • (2008) J Fruit Ornam Plant Res , vol.16 , pp. 295-304
    • Kuchta, P.1    Jpcz, T.2    Korbin, M.3
  • 21
    • 0036008790 scopus 로고    scopus 로고
    • Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis
    • LaMontagne, M.G., Michel, F.C. Jr, Holden, P.A. and Reddy, C.A. (2002) Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis. J Microbiol Methods 49, 255-264.
    • (2002) J Microbiol Methods , vol.49 , pp. 255-264
    • LaMontagne, M.G.1    Michel Jr, F.C.2    Holden, P.A.3    Reddy, C.A.4
  • 22
    • 79958770261 scopus 로고    scopus 로고
    • Verticillium wilt of olive: a case study to implement an integrated strategy to control a soil-borne pathogen
    • López-Escudero, F.J. and Mercado-Blanco, J. (2011) Verticillium wilt of olive: a case study to implement an integrated strategy to control a soil-borne pathogen. Plant Soil 344, 1-50.
    • (2011) Plant Soil , vol.344 , pp. 1-50
    • López-Escudero, F.J.1    Mercado-Blanco, J.2
  • 23
    • 78149334482 scopus 로고    scopus 로고
    • Molecular variation among isolates of Verticillium dahliae and polymerase chain reaction-based differentiation of races
    • Maruthachalam, K., Atallah, Z.K., Vallad, G.E., Klosterman, S.J., Hayes, R.J., Davis, R.M. and Subbarao, K.V. (2010) Molecular variation among isolates of Verticillium dahliae and polymerase chain reaction-based differentiation of races. Phytopathology 100, 1222-1230.
    • (2010) Phytopathology , vol.100 , pp. 1222-1230
    • Maruthachalam, K.1    Atallah, Z.K.2    Vallad, G.E.3    Klosterman, S.J.4    Hayes, R.J.5    Davis, R.M.6    Subbarao, K.V.7
  • 25
    • 0034799011 scopus 로고    scopus 로고
    • Detection of the nondefoliating pathotype of Verticillium dahliae in infected olive plants by nested PCR
    • Mercado-Blanco, J., Rodríguez-Jurado, D., Pérez-Artés, E. and Jiménez-Díaz, R.M. (2001) Detection of the nondefoliating pathotype of Verticillium dahliae in infected olive plants by nested PCR. Plant Pathol 50, 609-619.
    • (2001) Plant Pathol , vol.50 , pp. 609-619
    • Mercado-Blanco, J.1    Rodríguez-Jurado, D.2    Pérez-Artés, E.3    Jiménez-Díaz, R.M.4
  • 27
    • 0344962443 scopus 로고    scopus 로고
    • Simultaneous detection of the defoliating and nondefoliating Verticillium dahliae pathotypes in infected olive plants by duplex, nested polymerase chain reaction
    • Mercado-Blanco, J., Rodríguez-Jurado, D., Parrilla-Araujo, S. and Jiménez-Díaz, R.M. (2003) Simultaneous detection of the defoliating and nondefoliating Verticillium dahliae pathotypes in infected olive plants by duplex, nested polymerase chain reaction. Plant Dis 87, 1487-1494.
    • (2003) Plant Dis , vol.87 , pp. 1487-1494
    • Mercado-Blanco, J.1    Rodríguez-Jurado, D.2    Parrilla-Araujo, S.3    Jiménez-Díaz, R.M.4
  • 28
    • 84861481598 scopus 로고    scopus 로고
    • Development and evaluation of a loop-mediated isothermal amplification assay for detection of Erwinia amylovora based on chromosomal DNA
    • Moradi, A., Nasiri, J., Abdollahi, H. and Almasi, M. (2012) Development and evaluation of a loop-mediated isothermal amplification assay for detection of Erwinia amylovora based on chromosomal DNA. Eur J Plant Pathol 133, 609-620.
    • (2012) Eur J Plant Pathol , vol.133 , pp. 609-620
    • Moradi, A.1    Nasiri, J.2    Abdollahi, H.3    Almasi, M.4
  • 29
    • 84879247091 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP): recent progress in research and development
    • Mori, Y., Kanda, H. and Notomi, T. (2013) Loop-mediated isothermal amplification (LAMP): recent progress in research and development. J Infect Chemother 19, 404-411.
    • (2013) J Infect Chemother , vol.19 , pp. 404-411
    • Mori, Y.1    Kanda, H.2    Notomi, T.3
  • 30
    • 84865560843 scopus 로고    scopus 로고
    • ATP citrate lyase 1 (acl1) gene-based loop-mediated amplification assay for the detection of the Fusarium tricinctum species complex in pure cultures and in cereal samples
    • Niessen, L., Grafenhan, T. and Vogel, R.F. (2012) ATP citrate lyase 1 (acl1) gene-based loop-mediated amplification assay for the detection of the Fusarium tricinctum species complex in pure cultures and in cereal samples. Int J Food Microbiol 158, 171-185.
    • (2012) Int J Food Microbiol , vol.158 , pp. 171-185
    • Niessen, L.1    Grafenhan, T.2    Vogel, R.F.3
  • 31
    • 84879517356 scopus 로고    scopus 로고
    • The application of loop-mediated isothermal amplification (LAMP) in food testing for bacterial pathogens and fungal contaminants
    • Niessen, L., Luo, J., Denschlag, C. and Vogel, R.F. (2013) The application of loop-mediated isothermal amplification (LAMP) in food testing for bacterial pathogens and fungal contaminants. Food Microbiol 36, 191-206.
    • (2013) Food Microbiol , vol.36 , pp. 191-206
    • Niessen, L.1    Luo, J.2    Denschlag, C.3    Vogel, R.F.4
  • 33
    • 33745946040 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the vascular wilt fungus Verticillium dahliae: a novel gene order for Verticillium and a diagnostic tool for species identification
    • Pantou, M.P., Kouvelis, V.N. and Typas, M.A. (2006) The complete mitochondrial genome of the vascular wilt fungus Verticillium dahliae: a novel gene order for Verticillium and a diagnostic tool for species identification. Curr Genet 50, 125-136.
    • (2006) Curr Genet , vol.50 , pp. 125-136
    • Pantou, M.P.1    Kouvelis, V.N.2    Typas, M.A.3
  • 35
    • 0033842824 scopus 로고    scopus 로고
    • Differentiation of cotton-defoliating and nondefoliating pathotypes of Verticillium dahliae by RAPD and specific PCR analyses
    • Pérez-Artés, E., García-Pedrajas, M.D., Bejarano-Alcázar, J. and Jiménez-Díaz, R.M. (2000) Differentiation of cotton-defoliating and nondefoliating pathotypes of Verticillium dahliae by RAPD and specific PCR analyses. Eur J Plant Pathol 106, 507-517.
    • (2000) Eur J Plant Pathol , vol.106 , pp. 507-517
    • Pérez-Artés, E.1    García-Pedrajas, M.D.2    Bejarano-Alcázar, J.3    Jiménez-Díaz, R.M.4
  • 36
    • 21244468677 scopus 로고    scopus 로고
    • Detection of the defoliating and nondefoliating pathotypes of Verticillium dahliae in artificial and natural soils by nested PCR
    • Pérez-Artés, E., Mercado-Blanco, J., Ruz-Carrillo, A.R., Rodríguez-Jurado, D. and Jiménez-Díaz, R.M. (2005) Detection of the defoliating and nondefoliating pathotypes of Verticillium dahliae in artificial and natural soils by nested PCR. Plant Soil 268, 349-356.
    • (2005) Plant Soil , vol.268 , pp. 349-356
    • Pérez-Artés, E.1    Mercado-Blanco, J.2    Ruz-Carrillo, A.R.3    Rodríguez-Jurado, D.4    Jiménez-Díaz, R.M.5
  • 37
    • 83655211642 scopus 로고    scopus 로고
    • Rapid identification of transgenic cotton (Gossypium hirsutum L.) plants by loop-mediated isothermal amplification
    • Rostamkhani, N., Haghnazari, A., Tohidfar, M. and Moradi, A. (2011) Rapid identification of transgenic cotton (Gossypium hirsutum L.) plants by loop-mediated isothermal amplification. Czech J Genet Plant Breed 47, 140-148.
    • (2011) Czech J Genet Plant Breed , vol.47 , pp. 140-148
    • Rostamkhani, N.1    Haghnazari, A.2    Tohidfar, M.3    Moradi, A.4
  • 39
    • 84896070973 scopus 로고    scopus 로고
    • Survey of olive fungal disease in north of Iran
    • Sanei, S.J. and Razavi, S.E. (2012) Survey of olive fungal disease in north of Iran. Ann Rev & Res Bio 2, 27-36.
    • (2012) Ann Rev & Res Bio , vol.2 , pp. 27-36
    • Sanei, S.J.1    Razavi, S.E.2
  • 40
    • 34547728059 scopus 로고    scopus 로고
    • Technique for quantitative detection of specific DNA sequences using alternately binding quenching probe competitive assay combined with loop-mediated isothermal amplification
    • Tani, H., Teramura, T., Adachi, K., Tsuneda, S., Kurata, S., Nakamura, K., Kanagawa, T. and Noda, N. (2007) Technique for quantitative detection of specific DNA sequences using alternately binding quenching probe competitive assay combined with loop-mediated isothermal amplification. Anal Chem 79, 5608-5613.
    • (2007) Anal Chem , vol.79 , pp. 5608-5613
    • Tani, H.1    Teramura, T.2    Adachi, K.3    Tsuneda, S.4    Kurata, S.5    Nakamura, K.6    Kanagawa, T.7    Noda, N.8
  • 41
    • 78349253085 scopus 로고    scopus 로고
    • Detection of Botrytis cinerea by loop-mediated isothermal amplification
    • Tomlinson, J.A., Dickinson, M.J. and Boonham, N. (2010) Detection of Botrytis cinerea by loop-mediated isothermal amplification. Lett Appl Microbiol 51, 650-657.
    • (2010) Lett Appl Microbiol , vol.51 , pp. 650-657
    • Tomlinson, J.A.1    Dickinson, M.J.2    Boonham, N.3
  • 42
    • 0033888305 scopus 로고    scopus 로고
    • Purification and characterization of a common soil component which inhibits the polymerase chain reaction
    • Watson, R.J. and Blackwell, B. (2000) Purification and characterization of a common soil component which inhibits the polymerase chain reaction. Can J Microbiol 46, 633-642.
    • (2000) Can J Microbiol , vol.46 , pp. 633-642
    • Watson, R.J.1    Blackwell, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.