메뉴 건너뛰기




Volumn 9, Issue 2, 2014, Pages

The core proteome and pan proteome of Salmonella Paratyphi A epidemic strains

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CORE PROTEIN; PAN PROTEIN; UNCLASSIFIED DRUG; PROTEOME; TRANSCRIPTOME;

EID: 84896076058     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0089197     Document Type: Article
Times cited : (12)

References (40)
  • 2
    • 73649135423 scopus 로고    scopus 로고
    • Global trends in typhoid and paratyphoid Fever
    • Crump JA, Mintz ED (2010) Global trends in typhoid and paratyphoid Fever. Clin Infect Dis 50: 241-246.
    • (2010) Clin Infect Dis , vol.50 , pp. 241-246
    • Crump, J.A.1    Mintz, E.D.2
  • 4
    • 77956898011 scopus 로고    scopus 로고
    • Trends and disease burden of enteric fever in Guangxi province, China, 1994-2004
    • Dong BQ, Yang J, Wang XY, Gong J, von Seidlein L, et al. (2010) Trends and disease burden of enteric fever in Guangxi province, China, 1994-2004. Bull World Health Organ 88: 689-696.
    • (2010) Bull World Health Organ , vol.88 , pp. 689-696
    • Dong, B.Q.1    Yang, J.2    Wang, X.Y.3    Gong, J.4    Von Seidlein, L.5
  • 5
    • 50649085606 scopus 로고    scopus 로고
    • Epidemics of Typhoid and Paratyphoid Fever From 1995 Through 2004 in China
    • Yan M, Liang W, Li W, Kan B (2005) Epidemics of Typhoid and Paratyphoid Fever From 1995 Through 2004 in China. DISEASE SURVEILLANCE 20: 401-403.
    • (2005) Disease Surveillance , vol.20 , pp. 401-403
    • Yan, M.1    Liang, W.2    Li, W.3    Kan, B.4
  • 7
    • 84866555340 scopus 로고    scopus 로고
    • Pan-genomic analysis provides insights into the genomic variation and evolution of Salmonella Paratyphi A
    • Liang W, Zhao Y, Chen C, Cui X, Yu J, et al. (2012) Pan-genomic analysis provides insights into the genomic variation and evolution of Salmonella Paratyphi A. PLoS One 7: e45346.
    • (2012) PLoS One , vol.7
    • Liang, W.1    Zhao, Y.2    Chen, C.3    Cui, X.4    Yu, J.5
  • 11
    • 0036792524 scopus 로고    scopus 로고
    • Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old
    • Kidgell C, Reichard U, Wain J, Linz B, Torpdahl M, et al. (2002) Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol 2: 39-45.
    • (2002) Infect Genet Evol , vol.2 , pp. 39-45
    • Kidgell, C.1    Reichard, U.2    Wain, J.3    Linz, B.4    Torpdahl, M.5
  • 12
    • 84859171170 scopus 로고    scopus 로고
    • Optimization of pulsed-field gel electrophoresis protocols for Salmonella Paratyphi A subtyping
    • Chen C, Zhao Y, Han H, Pang B, Zhang J, et al. (2012) Optimization of pulsed-field gel electrophoresis protocols for Salmonella Paratyphi A subtyping. Foodborne Pathog Dis 9: 325-330.
    • (2012) Foodborne Pathog Dis , vol.9 , pp. 325-330
    • Chen, C.1    Zhao, Y.2    Han, H.3    Pang, B.4    Zhang, J.5
  • 13
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
    • Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, et al. (2008) High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet 40: 987-993.
    • (2008) Nat Genet , vol.40 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5
  • 15
    • 77952757215 scopus 로고    scopus 로고
    • High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children
    • Holt KE, Baker S, Dongol S, Basnyat B, Adhikari N, et al. (2010) High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children. BMC Infect Dis 10: 144.
    • (2010) BMC Infect Dis , vol.10 , pp. 144
    • Holt, K.E.1    Baker, S.2    Dongol, S.3    Basnyat, B.4    Adhikari, N.5
  • 16
    • 79851504748 scopus 로고    scopus 로고
    • Temporal fluctuation of multidrug resistant salmonella typhi haplotypes in the mekong river delta region of Vietnam
    • Holt KE, Dolecek C, Chau TT, Duy PT, La TT, et al. (2011) Temporal fluctuation of multidrug resistant salmonella typhi haplotypes in the mekong river delta region of Vietnam. PLoS Negl Trop Dis 5: e929.
    • (2011) PLoS Negl Trop Dis , vol.5
    • Holt, K.E.1    Dolecek, C.2    Chau, T.T.3    Duy, P.T.4    La, T.T.5
  • 17
    • 84856578549 scopus 로고    scopus 로고
    • Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission
    • Baker S, Holt KE, Clements AC, Karkey A, Arjyal A, et al. (2011) Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission. Open Biol 1: 110008.
    • (2011) Open Biol , vol.1 , pp. 110008
    • Baker, S.1    Holt, K.E.2    Clements, A.C.3    Karkey, A.4    Arjyal, A.5
  • 19
    • 0034659815 scopus 로고    scopus 로고
    • Proteomics to study genes and genomes
    • DOI 10.1038/35015709
    • Pandey A, Mann M (2000) Proteomics to study genes and genomes. Nature 405: 837-846. (Pubitemid 30407862)
    • (2000) Nature , vol.405 , Issue.6788 , pp. 837-846
    • Pandey, A.1    Mann, M.2
  • 20
    • 0035397916 scopus 로고    scopus 로고
    • Proteomics - Post-genomic cartography to understand gene function
    • DOI 10.1016/S0165-6147(00)01663-1, PII S0165614700016631
    • Naaby-Hansen S, Waterfield MD, Cramer R (2001) Proteomics-post-genomic cartography to understand gene function. Trends Pharmacol Sci 22: 376-384. (Pubitemid 32592477)
    • (2001) Trends in Pharmacological Sciences , vol.22 , Issue.7 , pp. 376-384
    • Naaby-Hansen, S.1    Waterfield, M.D.2    Cramer, R.3
  • 21
    • 37449006786 scopus 로고    scopus 로고
    • Protein expression diversity amongst serovars of Salmonella enterica
    • Encheva V, Wait R, Begum S, Gharbia SE, Shah HN (2007) Protein expression diversity amongst serovars of Salmonella enterica. Microbiology 153: 4183-4193.
    • (2007) Microbiology , vol.153 , pp. 4183-4193
    • Encheva, V.1    Wait, R.2    Begum, S.3    Gharbia, S.E.4    Shah, H.N.5
  • 23
    • 33645707707 scopus 로고    scopus 로고
    • Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet
    • Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, et al. (2006) Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis 3: 59-67.
    • (2006) Foodborne Pathog Dis , vol.3 , pp. 59-67
    • Ribot, E.M.1    Fair, M.A.2    Gautom, R.3    Cameron, D.N.4    Hunter, S.B.5
  • 26
    • 70350135275 scopus 로고    scopus 로고
    • Comparative proteomic analysis of passaged Helicobacter pylori
    • Zhang MJ, Zhao F, Xiao D, Gu YX, Meng FL, et al. (2009) Comparative proteomic analysis of passaged Helicobacter pylori. J Basic Microbiol 49: 482-490.
    • (2009) J Basic Microbiol , vol.49 , pp. 482-490
    • Zhang, M.J.1    Zhao, F.2    Xiao, D.3    Gu, Y.X.4    Meng, F.L.5
  • 27
    • 84875391889 scopus 로고    scopus 로고
    • The OmpA family of proteins: Roles in bacterial pathogenesis and immunity
    • Confer AW, Ayalew S (2013) The OmpA family of proteins: roles in bacterial pathogenesis and immunity. Vet Microbiol 163: 207-222.
    • (2013) Vet Microbiol , vol.163 , pp. 207-222
    • Confer, A.W.1    Ayalew, S.2
  • 28
    • 0025604614 scopus 로고
    • Biophysics of the structure and function of porins
    • Jap BK, Walian PJ (1990) Biophysics of the structure and function of porins. Q Rev Biophys 23: 367-403. (Pubitemid 120031233)
    • (1990) Quarterly Reviews of Biophysics , vol.23 , Issue.4 , pp. 367-403
    • Jap, B.K.1    Walian, P.J.2
  • 29
    • 0037972514 scopus 로고    scopus 로고
    • The C-terminal domain of Salmonella enterica serovar typhimurium OmpA is an immunodominant antigen in mice but appears to be only partially exposed on the bacterial cell surface
    • DOI 10.1128/IAI.71.7.3937-3946.2003
    • Singh SP, Williams YU, Miller S, Nikaido H (2003) The C-terminal domain of Salmonella enterica serovar typhimurium OmpA is an immunodominant antigen in mice but appears to be only partially exposed on the bacterial cell surface. Infect Immun 71: 3937-3946. (Pubitemid 36753718)
    • (2003) Infection and Immunity , vol.71 , Issue.7 , pp. 3937-3946
    • Singh, S.P.1    Williams, Y.U.2    Miller, S.3    Nikaido, H.4
  • 30
    • 0026785288 scopus 로고
    • Pore-forming activity of OmpA protein of Escherichia coli
    • Sugawara E, Nikaido H (1992) Pore-forming activity of OmpA protein of Escherichia coli. J Biol Chem 267: 2507-2511.
    • (1992) J Biol Chem , vol.267 , pp. 2507-2511
    • Sugawara, E.1    Nikaido, H.2
  • 31
    • 0028321391 scopus 로고
    • OmpA protein of Escherichia coli outer membrane occurs in open and closed channel forms
    • Sugawara E, Nikaido H (1994) OmpA protein of Escherichia coli outer membrane occurs in open and closed channel forms. J Biol Chem 269: 17981-17987. (Pubitemid 24206192)
    • (1994) Journal of Biological Chemistry , vol.269 , Issue.27 , pp. 17981-17987
    • Sugawara, E.1    Nikaido, H.2
  • 32
    • 0027966054 scopus 로고
    • RpoS is necessary for both the positive and negative regulation of starvation survival genes during phosphate, carbon, and nitrogen starvation in Salmonella typhimurium
    • O'Neal CR, Gabriel WM, Turk AK, Libby SJ, Fang FC, et al. (1994) RpoS is necessary for both the positive and negative regulation of starvation survival genes during phosphate, carbon, and nitrogen starvation in Salmonella typhimurium. J Bacteriol 176: 4610-4616. (Pubitemid 24237964)
    • (1994) Journal of Bacteriology , vol.176 , Issue.15 , pp. 4610-4616
    • O'Neal, C.R.1    Gabriel, W.M.2    Turk, A.K.3    Libby, S.J.4    Fang, F.C.5    Spector, M.P.6
  • 33
    • 0029891850 scopus 로고    scopus 로고
    • RpoS-dependent regulation of genes expressed at late stationary phase in Escherichia coli
    • DOI 10.1016/0014-5793(96)00426-7
    • Talukder AA, Yanai S, Nitta T, Kato A, Yamada M (1996) RpoS-dependent regulation of genes expressed at late stationary phase in Escherichia coli. FEBS Lett 386: 177-180. (Pubitemid 26170138)
    • (1996) FEBS Letters , vol.386 , Issue.2-3 , pp. 177-180
    • Talukder, A.A.1    Yanai, S.2    Nitta, T.3    Kato, A.4    Yamada, M.5
  • 34
    • 0035086834 scopus 로고    scopus 로고
    • Transcription of arcA and rpoS during growth of Salmonella typhimurium under aerobic and microaerobic conditions
    • Sevcik M, Sebkova A, Volf J, Rychlik I (2001) Transcription of arcA and rpoS during growth of Salmonella typhimurium under aerobic and microaerobic conditions. Microbiology 147: 701-708. (Pubitemid 32243731)
    • (2001) Microbiology , vol.147 , Issue.3 , pp. 701-708
    • Sevcik, M.1    Sebkova, A.2    Volf, J.3    Rychlik, I.4
  • 35
    • 0033813826 scopus 로고    scopus 로고
    • Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium
    • Ibanez-Ruiz M, Robbe-Saule V, Hermant D, Labrude S, Norel F (2000) Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium. J Bacteriol 182: 5749-5756.
    • (2000) J Bacteriol , vol.182 , pp. 5749-5756
    • Ibanez-Ruiz, M.1    Robbe-Saule, V.2    Hermant, D.3    Labrude, S.4    Norel, F.5
  • 36
    • 0032054381 scopus 로고    scopus 로고
    • Salmonella typhi rpoS mutant is less cytotoxic than the parent strain but survives inside resting THP-1 macrophages
    • DOI 10.1016/S0378-1097(98)00075-5, PII S0378109798000755
    • Khan AQ, Zhao L, Hirose K, Miyake M, Li T, et al. (1998) Salmonella typhi rpoS mutant is less cytotoxic than the parent strain but survives inside resting THP-1 macrophages. FEMS Microbiol Lett 161: 201-208. (Pubitemid 28161336)
    • (1998) FEMS Microbiology Letters , vol.161 , Issue.1 , pp. 201-208
    • Khan, A.Q.1    Zhao, L.2    Hirose, K.3    Miyake, M.4    Li, T.5    Hashimoto, Y.6    Kawamura, Y.7    Ezaki, T.8
  • 37
    • 0021347950 scopus 로고
    • Molecular cloning and characterization of genes required for ribose transport and utilization in Escherichia coli K-12
    • Iida A, Harayama S, Iino T, Hazelbauer GL (1984) Molecular cloning and characterization of genes required for ribose transport and utilization in Escherichia coli K-12. J Bacteriol 158: 674-682. (Pubitemid 14145670)
    • (1984) Journal of Bacteriology , vol.158 , Issue.2 , pp. 674-682
    • Iida, A.1    Harayama, S.2    Iino, T.3    Hazelbauer, G.L.4
  • 38
    • 0020289561 scopus 로고
    • Evolution of the D-ribose operon of Escherichia coli B/r
    • Abou-Sabe M, Pilla J, Hazuda D, Ninfa A (1982) Evolution of the D-ribose operon on Escherichia coli B/r. J Bacteriol 150: 762-769. (Pubitemid 12007906)
    • (1982) Journal of Bacteriology , vol.150 , Issue.2 , pp. 762-769
    • Abou-Sabe, M.1    Pilla, J.2    Hazuda, D.3    Ninfa, A.4
  • 39
    • 84877733043 scopus 로고    scopus 로고
    • Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles
    • Meysman P, Sanchez-Rodriguez A, Fu Q, Marchal K, Engelen K (2013) Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles. Mol Biol Evol 30: 1302-1314.
    • (2013) Mol Biol Evol , vol.30 , pp. 1302-1314
    • Meysman, P.1    Sanchez-Rodriguez, A.2    Fu, Q.3    Marchal, K.4    Engelen, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.