메뉴 건너뛰기




Volumn 78, Issue , 2014, Pages 28-36

Pyrosequencing technology reveals the impact of different manure doses on the bacterial community in apple rhizosphere soil

Author keywords

Apple rhizosphere; Manure; Microbial community; Pyrosequencing

Indexed keywords


EID: 84896045647     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2014.02.004     Document Type: Article
Times cited : (104)

References (54)
  • 1
    • 0036022423 scopus 로고    scopus 로고
    • Bacillus funiculus sp. nov., novel filamentous isolates from activated sludge
    • Ajithkumar V.P., Ajithkumar B., Iriye R., Sakai T. Bacillus funiculus sp. nov., novel filamentous isolates from activated sludge. Int. J. Syst. Evol. Micr. 2002, 52:1141-1144.
    • (2002) Int. J. Syst. Evol. Micr. , vol.52 , pp. 1141-1144
    • Ajithkumar, V.P.1    Ajithkumar, B.2    Iriye, R.3    Sakai, T.4
  • 2
    • 79956157557 scopus 로고    scopus 로고
    • Effect of organic and mineral fertilizers and land management on soil enzyme activities
    • Balezentiene L., Klimas E. Effect of organic and mineral fertilizers and land management on soil enzyme activities. Agronomy Res. 2009, 7:191-197.
    • (2009) Agronomy Res. , vol.7 , pp. 191-197
    • Balezentiene, L.1    Klimas, E.2
  • 3
    • 34248225741 scopus 로고    scopus 로고
    • Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum
    • Barns S.M., Cain E.C., Sommerville L., Kuske C.R. Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl. Environ. Microb. 2007, 73:3113-3116.
    • (2007) Appl. Environ. Microb. , vol.73 , pp. 3113-3116
    • Barns, S.M.1    Cain, E.C.2    Sommerville, L.3    Kuske, C.R.4
  • 4
    • 84883470745 scopus 로고    scopus 로고
    • The interaction of ferric ions with Jack Bean urease by isothermal titration calorimetry
    • Behbehani G.R., Barzegar L. The interaction of ferric ions with Jack Bean urease by isothermal titration calorimetry. Natl. Acad. Sci. Lett. 2013, 36:393-395.
    • (2013) Natl. Acad. Sci. Lett. , vol.36 , pp. 393-395
    • Behbehani, G.R.1    Barzegar, L.2
  • 5
    • 0036922589 scopus 로고    scopus 로고
    • Nitrogen fixation in biological soil crusts from southeast Utah, USA
    • Belnap J. Nitrogen fixation in biological soil crusts from southeast Utah, USA. Biol. Fert. Soils 2002, 35:128-135.
    • (2002) Biol. Fert. Soils , vol.35 , pp. 128-135
    • Belnap, J.1
  • 6
    • 70349482733 scopus 로고    scopus 로고
    • 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    • Buee M., Reich M., Murat C., Morin E., Nilsson R.H., Uroz S., Martin F. 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol. 2009, 184:449-456.
    • (2009) New Phytol. , vol.184 , pp. 449-456
    • Buee, M.1    Reich, M.2    Murat, C.3    Morin, E.4    Nilsson, R.H.5    Uroz, S.6    Martin, F.7
  • 7
    • 0020467856 scopus 로고
    • Enzyme activity in soil: location and a possible role in microbial ecology
    • Burns R.G. Enzyme activity in soil: location and a possible role in microbial ecology. Soil Biol. Biochem. 1982, 14:423-427.
    • (1982) Soil Biol. Biochem. , vol.14 , pp. 423-427
    • Burns, R.G.1
  • 9
    • 0027064733 scopus 로고    scopus 로고
    • Cryoscanning electron microscopy of microbial extracellular polysaccharides and their association with minerals
    • Chenu C., Jaunet A.M. Cryoscanning electron microscopy of microbial extracellular polysaccharides and their association with minerals. Scanning 2011, 14:360-364.
    • (2011) Scanning , vol.14 , pp. 360-364
    • Chenu, C.1    Jaunet, A.M.2
  • 10
    • 1642307271 scopus 로고    scopus 로고
    • Evaluation of endophytic actinobacteria as antagonists of Gaeumannomyces graminis var. tritici in wheat
    • Coombs J.T., Michelsen P.P., Franco C.M.M. Evaluation of endophytic actinobacteria as antagonists of Gaeumannomyces graminis var. tritici in wheat. Biol. Control 2004, 29:359-366.
    • (2004) Biol. Control , vol.29 , pp. 359-366
    • Coombs, J.T.1    Michelsen, P.P.2    Franco, C.M.M.3
  • 13
    • 79952449114 scopus 로고    scopus 로고
    • Transport of carbon and nitrogen between litter and soil organic matter in a Northern Hardwood Forest
    • Fahey T.J., Yavitt J.B., Sherman R.E., Groffman P.M., Fisk M.C., Maerz J.C. Transport of carbon and nitrogen between litter and soil organic matter in a Northern Hardwood Forest. Ecosystems 2011, 14:326-340.
    • (2011) Ecosystems , vol.14 , pp. 326-340
    • Fahey, T.J.1    Yavitt, J.B.2    Sherman, R.E.3    Groffman, P.M.4    Fisk, M.C.5    Maerz, J.C.6
  • 14
    • 0141448855 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of microbial communities of subgingival plaque
    • Fujimoto C., Maeda H., Kokeguchi S., Takashiba S., Nishimura F., Arai H., Fukui K., Murayama Y. Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of microbial communities of subgingival plaque. J. Periodontal Res. 2003, 38:440-445.
    • (2003) J. Periodontal Res. , vol.38 , pp. 440-445
    • Fujimoto, C.1    Maeda, H.2    Kokeguchi, S.3    Takashiba, S.4    Nishimura, F.5    Arai, H.6    Fukui, K.7    Murayama, Y.8
  • 15
    • 0034522502 scopus 로고    scopus 로고
    • Long-term effects of municipal solid waste compost application on soil enzyme activities and microbial biomass
    • Garcia-Gil J.C., Plaza C., Soler-Rovira P., Polo A. Long-term effects of municipal solid waste compost application on soil enzyme activities and microbial biomass. Soil Biol. Biochem. 2000, 32:1907-1913.
    • (2000) Soil Biol. Biochem. , vol.32 , pp. 1907-1913
    • Garcia-Gil, J.C.1    Plaza, C.2    Soler-Rovira, P.3    Polo, A.4
  • 16
    • 0032908520 scopus 로고    scopus 로고
    • Influence of inorganic fertilizers and organic amendments on soil organic matter and soil microbial properties under tropical conditions
    • Goyal S., Chander K., Mundra M.C., Kapoor K.K. Influence of inorganic fertilizers and organic amendments on soil organic matter and soil microbial properties under tropical conditions. Biol. Fert. Soils 1999, 29:196-200.
    • (1999) Biol. Fert. Soils , vol.29 , pp. 196-200
    • Goyal, S.1    Chander, K.2    Mundra, M.C.3    Kapoor, K.K.4
  • 18
    • 84867699156 scopus 로고    scopus 로고
    • Plant growth promoting potential and soil enzyme production of the most abundant Streptomyces spp. from wheat rhizosphere
    • Jog R., Nareshkumar G., Rajkumar S. Plant growth promoting potential and soil enzyme production of the most abundant Streptomyces spp. from wheat rhizosphere. J. Appl. Microbiol. 2012, 5:1154-1164.
    • (2012) J. Appl. Microbiol. , vol.5 , pp. 1154-1164
    • Jog, R.1    Nareshkumar, G.2    Rajkumar, S.3
  • 20
    • 33845752038 scopus 로고    scopus 로고
    • Methylotenera mobilis gen. nov., sp. nov., an obligately methylamine-utilizing bacterium within the family Methylophilaceae
    • Kalyuzhnaya M.G., Bowerman S., Lara J.C., Lidstrom M.E., Chistoserdova L. Methylotenera mobilis gen. nov., sp. nov., an obligately methylamine-utilizing bacterium within the family Methylophilaceae. Int. J. Syst. Evol. Micr. 2006, 56:2819-2823.
    • (2006) Int. J. Syst. Evol. Micr. , vol.56 , pp. 2819-2823
    • Kalyuzhnaya, M.G.1    Bowerman, S.2    Lara, J.C.3    Lidstrom, M.E.4    Chistoserdova, L.5
  • 21
    • 0032982983 scopus 로고    scopus 로고
    • Response of soil microbial biomass, urease and xylanase within particle size fractions to long-term soil management
    • Kandeler E., Stemmer M., Klimanek E.M. Response of soil microbial biomass, urease and xylanase within particle size fractions to long-term soil management. Soil Biol. Biochem. 1999, 31:261-273.
    • (1999) Soil Biol. Biochem. , vol.31 , pp. 261-273
    • Kandeler, E.1    Stemmer, M.2    Klimanek, E.M.3
  • 23
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl. Environ. Microb. 2009, 75:5111-5120.
    • (2009) Appl. Environ. Microb. , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 24
    • 79953028506 scopus 로고    scopus 로고
    • Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea
    • Lee O.O., Wang Y., Yang J., Lafi F.F., Al-Suwailem A., Qian P.Y. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. ISME J. 2010, 5:650-664.
    • (2010) ISME J. , vol.5 , pp. 650-664
    • Lee, O.O.1    Wang, Y.2    Yang, J.3    Lafi, F.F.4    Al-Suwailem, A.5    Qian, P.Y.6
  • 25
    • 84874782170 scopus 로고    scopus 로고
    • Effects of interplanting of herbage on soil nutrient of non-irrigated apple orchard in the loess plateau
    • Li H., Zhang G., Zhao Z., Li K. Effects of interplanting of herbage on soil nutrient of non-irrigated apple orchard in the loess plateau. Acta Hortic. Sin. 2007, 2:41.
    • (2007) Acta Hortic. Sin. , vol.2 , pp. 41
    • Li, H.1    Zhang, G.2    Zhao, Z.3    Li, K.4
  • 26
    • 36549038110 scopus 로고    scopus 로고
    • Bioleaching of metals from spent lithium ion secondary batteries using Acidithiobacillus ferrooxidans
    • Mishra D., Kim D., Ralph D.E., Ahn J., Rhee Y. Bioleaching of metals from spent lithium ion secondary batteries using Acidithiobacillus ferrooxidans. Waste Manage. 2008, 28:333-338.
    • (2008) Waste Manage. , vol.28 , pp. 333-338
    • Mishra, D.1    Kim, D.2    Ralph, D.E.3    Ahn, J.4    Rhee, Y.5
  • 27
    • 79951926011 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils
    • Nacke H., Thürmer A., Wollherr A., Will C., Hodac L., Herold N., Schöning I., Schrumpf M., Daniel R. Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS One 2011, 6:e17000.
    • (2011) PLoS One , vol.6
    • Nacke, H.1    Thürmer, A.2    Wollherr, A.3    Will, C.4    Hodac, L.5    Herold, N.6    Schöning, I.7    Schrumpf, M.8    Daniel, R.9
  • 28
    • 0025962381 scopus 로고
    • Bacillus niacini sp. nov., a nicotinate-metabolizing mesophile isolated from soil
    • Nagel M., Andreesen J.R. Bacillus niacini sp. nov., a nicotinate-metabolizing mesophile isolated from soil. Int. J. Syst. Bacteriol. 1991, 41:134-139.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 134-139
    • Nagel, M.1    Andreesen, J.R.2
  • 30
    • 16544367691 scopus 로고    scopus 로고
    • Determination of nitrogen-fixing phylotypes in Lyngbya sp. and Microcoleus chthonoplastes cyanobacterial mats from Guerrero Negro, Baja California, Mexico
    • Omoregie E.O., Crumbliss L.L., Bebout B.M., Zehr J.P. Determination of nitrogen-fixing phylotypes in Lyngbya sp. and Microcoleus chthonoplastes cyanobacterial mats from Guerrero Negro, Baja California, Mexico. Appl. Environ. Microb. 2004, 70:2119-2128.
    • (2004) Appl. Environ. Microb. , vol.70 , pp. 2119-2128
    • Omoregie, E.O.1    Crumbliss, L.L.2    Bebout, B.M.3    Zehr, J.P.4
  • 31
    • 79954873745 scopus 로고    scopus 로고
    • Soil properties change during the transition to integrated and organic apple production in a New York orchard
    • Peck G.M., Merwin I.A., Thies J.E., Schindelbeck R.R., Brown M.G. Soil properties change during the transition to integrated and organic apple production in a New York orchard. Appl. Soil. Ecol. 2011, 48:18-30.
    • (2011) Appl. Soil. Ecol. , vol.48 , pp. 18-30
    • Peck, G.M.1    Merwin, I.A.2    Thies, J.E.3    Schindelbeck, R.R.4    Brown, M.G.5
  • 32
    • 84867673414 scopus 로고    scopus 로고
    • Application of bio-organic fertilizer can control Fusarium wilt of cucumber plants by regulating microbial community of rhizosphere soil
    • Qiu M., Zhang R., Xue C., Zhang S., Li S., Zhang N., Shen Q. Application of bio-organic fertilizer can control Fusarium wilt of cucumber plants by regulating microbial community of rhizosphere soil. Biol. Fert. Soils 2012, 48:807-816.
    • (2012) Biol. Fert. Soils , vol.48 , pp. 807-816
    • Qiu, M.1    Zhang, R.2    Xue, C.3    Zhang, S.4    Li, S.5    Zhang, N.6    Shen, Q.7
  • 34
    • 0032540905 scopus 로고    scopus 로고
    • A sequencing method based on real-time pyrophosphate
    • Ronaghi M., Uhlén M., Nyrén P. A sequencing method based on real-time pyrophosphate. Science 1998, 281:363-365.
    • (1998) Science , vol.281 , pp. 363-365
    • Ronaghi, M.1    Uhlén, M.2    Nyrén, P.3
  • 36
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E., Leeflang P., Gommans S., Van Den Broek J., Van Mil S., Wernars K. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microb. 2001, 67:2284-2291.
    • (2001) Appl. Environ. Microb. , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    Van Den Broek, J.4    Van Mil, S.5    Wernars, K.6
  • 37
    • 84896056712 scopus 로고    scopus 로고
    • Effects of different water and manure management practices on quality and yield of tomato and NO_3~--N accumulations in soil profile
    • Tang Z., Li H., Qiu J. Effects of different water and manure management practices on quality and yield of tomato and NO_3~--N accumulations in soil profile. Plant Nut. Fert. Sci. 2010, 16:413-418.
    • (2010) Plant Nut. Fert. Sci. , vol.16 , pp. 413-418
    • Tang, Z.1    Li, H.2    Qiu, J.3
  • 38
    • 84864029705 scopus 로고    scopus 로고
    • T-RFLP analysis of structural changes in soil bacterial communities in response to metal and metalloid contamination and initial phytoremediation
    • Tipayno S., Kim C.G., Sa T. T-RFLP analysis of structural changes in soil bacterial communities in response to metal and metalloid contamination and initial phytoremediation. Appl. Soil Ecol. 2012, 61:137-146.
    • (2012) Appl. Soil Ecol. , vol.61 , pp. 137-146
    • Tipayno, S.1    Kim, C.G.2    Sa, T.3
  • 39
    • 0036790952 scopus 로고    scopus 로고
    • Comparative genome analysis of the α-proteobacteria: relationships between plant and animal pathogens and host specificity
    • Tsolis R.M. Comparative genome analysis of the α-proteobacteria: relationships between plant and animal pathogens and host specificity. Proc. Natil. Acad. Sci. 2002, 99:12503-12505.
    • (2002) Proc. Natil. Acad. Sci. , vol.99 , pp. 12503-12505
    • Tsolis, R.M.1
  • 40
    • 49649087440 scopus 로고    scopus 로고
    • Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
    • Urich T., Lanzén A., Qi J., Huson D.H., Schleper C., Schuster S.C. Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS One 2008, 3:e2527.
    • (2008) PLoS One , vol.3
    • Urich, T.1    Lanzén, A.2    Qi, J.3    Huson, D.H.4    Schleper, C.5    Schuster, S.C.6
  • 41
    • 77956730459 scopus 로고    scopus 로고
    • The key role of soil microbes
    • Verstraete W., Mertens B. The key role of soil microbes. Dev. Soil Sci. 2004, 29:127-157.
    • (2004) Dev. Soil Sci. , vol.29 , pp. 127-157
    • Verstraete, W.1    Mertens, B.2
  • 42
    • 0003959241 scopus 로고
    • Urease activity and inhibition in flooded soil systems
    • Vlek P., Stumpe J.M., Byrnes B.H. Urease activity and inhibition in flooded soil systems. Nutr. Cycl. Agroecosys. 1980, 1:191-202.
    • (1980) Nutr. Cycl. Agroecosys. , vol.1 , pp. 191-202
    • Vlek, P.1    Stumpe, J.M.2    Byrnes, B.H.3
  • 44
    • 84857429885 scopus 로고    scopus 로고
    • Composition, diversity, and origin of the bacterial community in grass carp intestine
    • Wu S., Wang G., Angert E.R., Wang W., Li W., Zou H. Composition, diversity, and origin of the bacterial community in grass carp intestine. PloS One 2012, 7:e30440.
    • (2012) PloS One , vol.7
    • Wu, S.1    Wang, G.2    Angert, E.R.3    Wang, W.4    Li, W.5    Zou, H.6
  • 45
    • 38949087881 scopus 로고    scopus 로고
    • Relationships between soil nutrients and rhizospheric soil microbial communities and enzyme activities in a maize-capsicum intercropping system
    • Xu Q., Cheng Z.H., Meng H.W., Zhang Y. Relationships between soil nutrients and rhizospheric soil microbial communities and enzyme activities in a maize-capsicum intercropping system. J. Appl. Ecol. 2007, 18:2747.
    • (2007) J. Appl. Ecol. , vol.18 , pp. 2747
    • Xu, Q.1    Cheng, Z.H.2    Meng, H.W.3    Zhang, Y.4
  • 46
    • 32544454823 scopus 로고    scopus 로고
    • Soil fumigation and compost amendment alter soil microbial community composition but do not improve tree growth or yield in an apple replant site
    • Yao S., Merwin I.A., Abawi G.S., Thies J.E. Soil fumigation and compost amendment alter soil microbial community composition but do not improve tree growth or yield in an apple replant site. Soil Biol. Biochem. 2006, 38:587-599.
    • (2006) Soil Biol. Biochem. , vol.38 , pp. 587-599
    • Yao, S.1    Merwin, I.A.2    Abawi, G.S.3    Thies, J.E.4
  • 47
    • 84876448473 scopus 로고    scopus 로고
    • Evaluation of apple replant problems based on different soil disinfection treatments-links to soil microbial community structure?
    • Yim B., Smalla K., Winkelmann T. Evaluation of apple replant problems based on different soil disinfection treatments-links to soil microbial community structure?. Plant Soil 2013, 366:617-631.
    • (2013) Plant Soil , vol.366 , pp. 617-631
    • Yim, B.1    Smalla, K.2    Winkelmann, T.3
  • 48
    • 26244435086 scopus 로고    scopus 로고
    • Bacillus litoralis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea
    • Yoon J.H., Oh T.K. Bacillus litoralis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int. J. Syst. Evol. Micr. 2005, 55:1945-1948.
    • (2005) Int. J. Syst. Evol. Micr. , vol.55 , pp. 1945-1948
    • Yoon, J.H.1    Oh, T.K.2
  • 49
    • 2942675265 scopus 로고    scopus 로고
    • Interactions and self-organization in the soil-microbe complex
    • Young I.M., Crawford J.W. Interactions and self-organization in the soil-microbe complex. Science 2004, 304:1634-1637.
    • (2004) Science , vol.304 , pp. 1634-1637
    • Young, I.M.1    Crawford, J.W.2
  • 50
    • 9744270686 scopus 로고    scopus 로고
    • Bacillus asahii sp. nov., a novel bacterium isolated from soil with the ability to deodorize the bad smell generated from short-chain fatty acids
    • Yumoto I., Hirota K., Yamaga S., Nodasaka Y., Kawasaki T., Matsuyama H., Nakajima K. Bacillus asahii sp. nov., a novel bacterium isolated from soil with the ability to deodorize the bad smell generated from short-chain fatty acids. Int. J. Syst. Evol. Micr. 2004, 54:1997-2001.
    • (2004) Int. J. Syst. Evol. Micr. , vol.54 , pp. 1997-2001
    • Yumoto, I.1    Hirota, K.2    Yamaga, S.3    Nodasaka, Y.4    Kawasaki, T.5    Matsuyama, H.6    Nakajima, K.7
  • 51
    • 0007517030 scopus 로고
    • Relationships between soil urease activity and other soil properties
    • Zantua M.I., Dumenil L.C., Bremner J.M. Relationships between soil urease activity and other soil properties. Soil Sci. Soc. Am. J. 1977, 41:350-352.
    • (1977) Soil Sci. Soc. Am. J. , vol.41 , pp. 350-352
    • Zantua, M.I.1    Dumenil, L.C.2    Bremner, J.M.3
  • 52
  • 53
    • 72149133922 scopus 로고    scopus 로고
    • The effects of mineral fertilizer and organic manure on soil microbial community and diversity
    • Zhong W., Gu T., Wang W., Zhang B., Lin X., Huang Q., Shen W. The effects of mineral fertilizer and organic manure on soil microbial community and diversity. Plant Soil 2010, 326:511-522.
    • (2010) Plant Soil , vol.326 , pp. 511-522
    • Zhong, W.1    Gu, T.2    Wang, W.3    Zhang, B.4    Lin, X.5    Huang, Q.6    Shen, W.7
  • 54
    • 84882657120 scopus 로고    scopus 로고
    • Soil properties under different orchard floor management systems for organic apple production
    • Zoppolo R.J., Stefanelli D., Bird G.W., Perry R.L. Soil properties under different orchard floor management systems for organic apple production. Org. Agric. 2012, 1:231-246.
    • (2012) Org. Agric. , vol.1 , pp. 231-246
    • Zoppolo, R.J.1    Stefanelli, D.2    Bird, G.W.3    Perry, R.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.