Genome sequences of three species in the Family Planctomycetaceae

Journal of Bacteriology

Volumn 194, Issue 14, 2012, Pages 3740-

  Guo, Min ^a   Han, Xifang ^a   Jin, Tao ^a   Zhou, Lisha ^a   Yang, Jinlong ^a   Li, Zihua ^a   Chen, Jing ^a   Geng, Bin ^a   Zou, Yuanqiang ^a   Wan, Daiwei ^a   Li, Daocheng ^a   Dai, Wenkui ^a   Wang, Hui ^a   Chen, Yanling ^a   Ni, Peixiang ^a   Fang, Chengxiang ^a,b   Yang, Ruifu ^a,c  

^a BGI SHENZHEN   (China)

^b WUHAN UNIVERSITY   (China)

^c BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GENE SEQUENCE; GENOME ANALYSIS; NONHUMAN; NOTE; PARASITE; PARASITE IDENTIFICATION; PARASITE ISOLATION; PRIORITY JOURNAL; SCHLESNERIA PALUDICOLA; SINGULISPHAERA ACIDIPHILA; ZAVARZINELLA FORMOSA;

GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PLANCTOMYCETALES; SPECIES SPECIFICITY;

EUKARYOTA; PALUDICOLA; PLANCTOMYCETACEAE;

EID: 84864015436     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00639-12     Document Type: Note

References (11)

1. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673- 679.
2. Eloe EA, et al. 2011. Going deeper: metagenome of a hadopelagic microbial community. PLoS One 6:e20388. doi:10.1371/journal.pone.0020388.
3. Kulichevskaya IS, et al. 2009. Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog. Int. J. Syst. Evol. Microbiol. 59:357-364.
4. Kulichevskaya IS, et al. 2008. Singulisphaera acidiphila gen. nov., sp. nov., a non-filamentous, Isosphaera-like planctomycete from acidic northern wetlands. Int. J. Syst. Evol. Microbiol. 58:1186 -1193.
5. Kulichevskaya IS, et al. 2007. Schlesneria paludicola gen. nov., sp. nov., the first acidophilic member of the order Planctomycetales, from sphagnum-dominated boreal wetlands. Int. J. Syst. Evol. Microbiol. 57:2680- 2687.
6. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100 -3108.
7. Li R, et al. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
9. Moon YJ, et al. 12 January 2012. Proteome analyses of hydrogenproducing hyperthermophilic archaeon Thermococcus onnurineus NA1 in different one-carbon substrate culture conditions. Mol. Cell. Proteomics [Epub ahead of print.] doi:10.1074/mcp.M111.015420.
10. Narasingarao P, et al. 2012. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J. 6:81-93.
11. Siebers B, et al. 2011. The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota. PLoS One 6:e24222. doi:10.1371/journal.pone.0024222.