메뉴 건너뛰기




Volumn 113, Issue 4, 2014, Pages 669-680

Combining FISH and model-based predictions to understand chromosome evolution in Typhonium (Araceae)

Author keywords

45S rDNA; 5S rDNA; Ancestral trait reconstruction; aneuploid chromosome numbers; Araceae; Bayesian inference; chromosome evolution; FISH; maximum likelihood inference; telomeres; Typhonium

Indexed keywords

CHROMOSOME; DATA SET; GENETIC MARKER; HYBRIDIZATION; MOLECULAR ANALYSIS; MONOCOTYLEDON; NUMERICAL MODEL; PHYLOGENY; PLASTID; PREDICTION;

EID: 84895798027     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mct302     Document Type: Article
Times cited : (27)

References (48)
  • 2
    • 41149153450 scopus 로고    scopus 로고
    • Molecular and cytogenetic evidence for an allotetraploid origin of Trifolium dubium (Leguminosae)
    • Ansari HA, Ellison NW, Williams WM. 2008. Molecular and cytogenetic evidence for an allotetraploid origin of Trifolium dubium (Leguminosae). Chromosoma 117: 159-167.
    • (2008) Chromosoma , vol.117 , pp. 159-167
    • Ansari, H.A.1    Ellison, N.W.2    Williams, W.M.3
  • 3
    • 0026619175 scopus 로고
    • Genetics and molecular biology of telomeres
    • Biessmann H, Mason JM. 1992. Genetics and molecular biology of telomeres. Advances in Genetics 30: 185-249.
    • (1992) Advances in Genetics , vol.30 , pp. 185-249
    • Biessmann, H.1    Mason, J.M.2
  • 5
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 540-552
    • Castresana, J.1
  • 6
    • 84895811394 scopus 로고    scopus 로고
    • Further on the effects of branch lengths on ancestral state reconstruction
    • in press
    • Cusimano N, Renner SS. 2014. Further on the effects of branch lengths on ancestral state reconstruction. Systematic Biology (in press).
    • (2014) Systematic Biology
    • Cusimano, N.1    Renner, S.S.2
  • 7
    • 77950954438 scopus 로고    scopus 로고
    • A phylogeny of the Areae (Araceae) implies that Typhonium Sauromatum and the Australian species of Typhonium are distinct clades
    • Cusimano N, Barrett M, Hetterscheid WLA, Renner SS. 2010. A phylogeny of the Areae (Araceae) implies that Typhonium, Sauromatum and the Australian species of Typhonium are distinct clades. Taxon 59: 439-447.
    • (2010) Taxon , vol.59 , pp. 439-447
    • Cusimano, N.1    Barrett, M.2    Hetterscheid, W.L.A.3    Renner, S.S.4
  • 8
    • 80051930612 scopus 로고    scopus 로고
    • Relationships within the Araceae: Comparisons of morphological patterns with molecular phylogenies
    • Cusimano N, Bogner J, Mayo SJ, et al. 2011. Relationships within the Araceae: comparisons of morphological patterns with molecular phylogenies. American Journal of Botany 98: 654-668.
    • (2011) American Journal of Botany , vol.98 , pp. 654-668
    • Cusimano, N.1    Bogner, J.2    Mayo, S.J.3
  • 9
    • 84857712223 scopus 로고    scopus 로고
    • Maximum likelihood inference implies a high, not a low, ancestral haploid chromosome number in the Araceae, with a critique of the bias introduced by 'x'
    • Cusimano N, Sousa A, Renner SS. 2012a. Maximum likelihood inference implies a high, not a low, ancestral haploid chromosome number in the Araceae, with a critique of the bias introduced by 'x'. Annals of Botany 109: 681-692.
    • (2012) Annals of Botany , vol.109 , pp. 681-692
    • Cusimano, N.1    Sousa, A.2    Renner, S.S.3
  • 10
    • 84861212667 scopus 로고    scopus 로고
    • Anew method for handling missing species in diversification analysis applicable to randomly or non-randomly sampled phylogenies
    • Cusimano N, Stadler T, Renner SS. 2012b. Anew method for handling missing species in diversification analysis applicable to randomly or non-randomly sampled phylogenies. Systematic Biology 61: 785-792.
    • (2012) Systematic Biology , vol.61 , pp. 785-792
    • Cusimano, N.1    Stadler, T.2    Renner, S.S.3
  • 12
    • 0141720553 scopus 로고    scopus 로고
    • Variability of 5S and 45 SrDNA sites in Passiflora L. Species with distinct base chromosome numbers
    • DeMelo NF, Guerra M. 2003. Variability of 5S and 45 SrDNA sites in Passiflora L. species with distinct base chromosome numbers. Annals of Botany 92: 309-316.
    • (2003) Annals of Botany , vol.92 , pp. 309-316
    • Demelo, N.F.1    Guerra, M.2
  • 13
    • 0036943583 scopus 로고    scopus 로고
    • Origin of an apparent B chromosome by mutation, chromosome fragmentation and specific DNA sequence amplification
    • Dhar MK, Friebe B, Koul AK, Gill BS. 2002. Origin of an apparent B chromosome by mutation, chromosome fragmentation and specific DNA sequence amplification. Chromosoma 111: 332-340.
    • (2002) Chromosoma , vol.111 , pp. 332-340
    • Dhar, M.K.1    Friebe, B.2    Koul, A.K.3    Gill, B.S.4
  • 14
  • 15
    • 0028888311 scopus 로고
    • Telomere sequence localization and kar-yotype evolution in higher plants
    • Fuchs J, Brandes A, Schubert I. 1995. Telomere sequence localization and kar-yotype evolution in higher plants. Plant Systematics and Evolution 196: 227-241.
    • (1995) Plant Systematics and Evolution , vol.196 , pp. 227-241
    • Fuchs, J.1    Brandes, A.2    Schubert, I.3
  • 16
    • 84895831899 scopus 로고    scopus 로고
    • New Typhonium species from Asia
    • Hetterscheid WLA. 2013. New Typhonium species from Asia. Aroideana 36: 93-97.
    • (2013) Aroideana , vol.36 , pp. 93-97
    • Hetterscheid, W.L.A.1
  • 17
    • 0001847448 scopus 로고    scopus 로고
    • A reclassification of Sauromatum Schott and new species of Typhonium Schott (Araceae)
    • Hetterscheid WLA, Boyce PC. 2000. A reclassification of Sauromatum Schott and new species of Typhonium Schott (Araceae). Aroideana 23: 48-55.
    • (2000) Aroideana , vol.23 , pp. 48-55
    • Hetterscheid, W.L.A.1    Boyce, P.C.2
  • 18
    • 58449128544 scopus 로고    scopus 로고
    • New Typhonium (Araceae) speciesfrom Thailand
    • Hetterscheid WLA, Galloway A. 2006. New Typhonium (Araceae) speciesfrom Thailand. Aroideana 29: 80-85.
    • (2006) Aroideana , vol.29 , pp. 80-85
    • Hetterscheid, W.L.A.1    Galloway, A.2
  • 19
    • 0005782386 scopus 로고    scopus 로고
    • Three new species of Typhonium (Araceae) from Vietnam
    • Hetterscheid WLA, Nguyen VD. 2001. Three new species of Typhonium (Araceae) from Vietnam. Aroideana 24: 24-29.
    • (2001) Aroideana , vol.24 , pp. 24-29
    • Hetterscheid, W.L.A.1    Nguyen, V.D.2
  • 20
    • 0003376569 scopus 로고    scopus 로고
    • Typhonium (Araceae) of Thailand: New species and a revised key
    • Hetterscheid WLA, Sookchaloem D, Murata J. 2001. Typhonium (Araceae) of Thailand: new species and a revised key. Aroideana 24: 30-55.
    • (2001) Aroideana , vol.24 , pp. 30-55
    • Hetterscheid, W.L.A.1    Sookchaloem, D.2    Murata, J.3
  • 21
    • 0025856926 scopus 로고
    • Improved telomere detection using a telomere repeat probe (TTAGGG) n generated by PCR
    • Ijdo JW, Wells RA, Baldini A, Reeders ST. 1991. Improved telomere detection using a telomere repeat probe (TTAGGG) n generated by PCR. Nucleic Acids Research 19: 17.
    • (1991) Nucleic Acids Research , vol.19 , pp. 17
    • Ijdo, J.W.1    Wells, R.A.2    Baldini, A.3    Reeders, S.T.4
  • 22
    • 15544385627 scopus 로고    scopus 로고
    • Rapid concerted evolution of nuclear ribosomal DNAin two Tragopogon allopolyploidsof recent and recurrent origin
    • Kovarik A, Pires JC, Leitch AR, et al. 2005. Rapid concerted evolution of nuclear ribosomal DNAin two Tragopogon allopolyploidsof recent and recurrent origin. Genetics 169: 931-944.
    • (2005) Genetics , vol.169 , pp. 931-944
    • Kovarik, A.1    Pires, J.C.2    Leitch, A.R.3
  • 23
    • 0005783769 scopus 로고
    • Cytology of vascular plants: III. A study of Aroids
    • Larsen K. 1969. Cytology of vascular plants: III. A study of Aroids. Dansk Botanisk Arkiv 27: 39-59.
    • (1969) Dansk Botanisk Arkiv , vol.27 , pp. 39-59
    • Larsen, K.1
  • 24
    • 0001652989 scopus 로고
    • Chromosome variation in Araceae IV: From Acoreae to Lasieae
    • Marchant CJ. 1973. Chromosome variation in Araceae IV: from Acoreae to Lasieae. Kew Bulletin 28: 199-210.
    • (1973) Kew Bulletin , vol.28 , pp. 199-210
    • Marchant, C.J.1
  • 25
    • 34948861038 scopus 로고    scopus 로고
    • Evolution and func-tionofBchromosome45S rDNA sequencesin Brachycomedi chromosomatica
    • Marschner S, Meister A, Blattner FR, Houben A. 2007. Evolution and func-tionofBchromosome45S rDNA sequencesin Brachycomedi chromosomatica. Genome 50: 638-644.
    • (2007) Genome , vol.50 , pp. 638-644
    • Marschner, S.1    Meister, A.2    Blattner, F.R.3    Houben, A.4
  • 26
    • 77649249692 scopus 로고    scopus 로고
    • Probabilistic models of chromosome number evolution and the inference of polyploidy
    • Mayrose I, Barker MS, Otto SP. 2010. Probabilistic models of chromosome number evolution and the inference of polyploidy. Systematic Biology 59: 132-144.
    • (2010) Systematic Biology , vol.59 , pp. 132-144
    • Mayrose, I.1    Barker, M.S.2    Otto, S.P.3
  • 27
    • 84857239359 scopus 로고    scopus 로고
    • Giant taro and its relatives: A phyl-ogenyofthe large genus Alocasia (Araceae) sheds lightonMiocenefloristic exchange in the Malesian region
    • Nauheimer L, Boyce PC, Renner SS. 2012. Giant taro and its relatives: a phyl-ogenyofthe large genus Alocasia (Araceae) sheds lightonMiocenefloristic exchange in the Malesian region. Molecular Phylogenetics and Evolution 63: 43-51.
    • (2012) Molecular Phylogenetics and Evolution , vol.63 , pp. 43-51
    • Nauheimer, L.1    Boyce, P.C.2    Renner, S.S.3
  • 28
    • 78751471260 scopus 로고
    • Chromosome numbers of the genera of Araceae
    • Petersen G. 1993. Chromosome numbers of the genera of Araceae. Aroideana 16: 37-46.
    • (1993) Aroideana , vol.16 , pp. 37-46
    • Petersen, G.1
  • 29
    • 84998225234 scopus 로고
    • Cytological studies on South Indian Araceae
    • Ramachandran K. 1978. Cytological studies on South Indian Araceae. Cytologia 43: 289-303.
    • (1978) Cytologia , vol.43 , pp. 289-303
    • Ramachandran, K.1
  • 30
    • 44349083668 scopus 로고    scopus 로고
    • Repetitive DNA and chromosomal rearrangements: Speciation-related events in plant genomes
    • Raskina O, Barber JC, Nevo E, Belyayev A. 2008. Repetitive DNA and chromosomal rearrangements: speciation-related events in plant genomes. Cytogenetic and Genome Research 120: 351-357.
    • (2008) Cytogenetic and Genome Research , vol.120 , pp. 351-357
    • Raskina, O.1    Barber, J.C.2    Nevo, E.3    Belyayev, A.4
  • 31
    • 0028003514 scopus 로고
    • Physical mapping of rRNAgenes byfluorescentinsitu hybridization and structural analysisof5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris)
    • Schmidt T, Schwarzacher T, Heslop-Harrison JS. 1994. Physical mapping of rRNAgenes byfluorescentinsitu hybridization and structural analysisof5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris). Theoretical and Applied Genetics 88: 629-636.
    • (1994) Theoretical and Applied Genetics , vol.88 , pp. 629-636
    • Schmidt, T.1    Schwarzacher, T.2    Heslop-Harrison, J.S.3
  • 33
    • 0000828589 scopus 로고
    • Telomeric polymorphism in Vicia faba
    • Schubert I. 1992. Telomeric polymorphism in Vicia faba. Biologisches Zentralblatt 111: 164-168.
    • (1992) Biologisches Zentralblatt , vol.111 , pp. 164-168
    • Schubert, I.1
  • 35
    • 79956330054 scopus 로고    scopus 로고
    • Interpretation of karyotype evolution should consider chromosome structural constraints
    • Schubert I, Lysak MA. 2011. Interpretation of karyotype evolution should consider chromosome structural constraints. Trends in Genetics 27: 207-216.
    • (2011) Trends in Genetics , vol.27 , pp. 207-216
    • Schubert, I.1    Lysak, M.A.2
  • 36
    • 0000072952 scopus 로고
    • In situ hybridization confirms jumping nucleolus organizing regions in Allium
    • Schubert I, Wobus U. 1985. In situ hybridization confirms jumping nucleolus organizing regions in Allium. Chromosoma 92: 143-148.
    • (1985) Chromosoma , vol.92 , pp. 143-148
    • Schubert, I.1    Wobus, U.2
  • 37
    • 0029177255 scopus 로고
    • Alteration of basic chromosome numberby fusion-fission cycles
    • Schubert I, Rieger R, Fuchs J. 1995. Alteration of basic chromosome numberby fusion-fission cycles. Genome 38: 1289-1292.
    • (1995) Genome , vol.38 , pp. 1289-1292
    • Schubert, I.1    Rieger, R.2    Fuchs, J.3
  • 38
    • 0031841445 scopus 로고    scopus 로고
    • Telomeres and mechanisms of Robertsonian fusion
    • Slijepcevic P. 1998. Telomeres and mechanisms of Robertsonian fusion. Chromosoma 107: 136-140.
    • (1998) Chromosoma , vol.107 , pp. 136-140
    • Slijepcevic, P.1
  • 39
    • 84873735996 scopus 로고    scopus 로고
    • Molecular cytogenetics (FISH GISH) of Coccinia grandis: A ca. 3 myr-old species of Cucurbitaceae with the largest Y/autosome divergence in flowering plants
    • Sousa A, Fuchs J, Renner SS. 2013. Molecular cytogenetics (FISH, GISH) of Coccinia grandis: a ca. 3 myr-old species of Cucurbitaceae with the largest Y/autosome divergence in flowering plants. Cytogenetic and Genome Research 139: 107-118.
    • (2013) Cytogenetic and Genome Research , vol.139 , pp. 107-118
    • Sousa, A.1    Fuchs, J.2    Renner, S.S.3
  • 40
    • 77954243958 scopus 로고    scopus 로고
    • Karyological circumscription of Ipheion Rafinesque (Giliesioideae, Alliaceae)
    • Souza LGR, Crosa O, Guerra M. 2010. Karyological circumscription of Ipheion Rafinesque (Giliesioideae, Alliaceae). Plant Systematics and Evolution 287: 119-127.
    • (2010) Plant Systematics and Evolution , vol.287 , pp. 119-127
    • Souza, L.G.R.1    Crosa, O.2    Guerra, M.3
  • 41
    • 66649112201 scopus 로고    scopus 로고
    • The karyotype of Nothoscordum arenarium Herter (Gilliesioideae, Alliaceae): A popula-tional and cytomolecular analysis
    • Souza LGR, Crosa O, Winge H, Guerra M. 2009. The karyotype of Nothoscordum arenarium Herter (Gilliesioideae, Alliaceae): a popula-tional and cytomolecular analysis. Genetics and Molecular Biology 32: 111-116.
    • (2009) Genetics and Molecular Biology , vol.32 , pp. 111-116
    • Souza, L.G.R.1    Crosa, O.2    Winge, H.3    Guerra, M.4
  • 42
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogen-etic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogen-etic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 43
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web-servers
    • Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 57: 758-771.
    • (2008) Systematic Biology , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 44
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 45
    • 48249091969 scopus 로고    scopus 로고
    • Karyotype diversification and evolution in diploid and polyploid South American Hypochaeris (Asteraceae) inferred from rDNA localization and genetic fingerprint data
    • Weiss-Schneeweiss H, Tremetsberger K, Schneeweiss GM, Parker JS, Stuessy TF. 2008. Karyotype diversification and evolution in diploid and polyploid South American Hypochaeris (Asteraceae) inferred from rDNA localization and genetic fingerprint data. Annals of Botany 101: 909-918.
    • (2008) Annals of Botany , vol.101 , pp. 909-918
    • Weiss-Schneeweiss, H.1    Tremetsberger, K.2    Schneeweiss, G.M.3    Parker, J.S.4    Stuessy, T.F.5
  • 46
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds, New York: Academic Press
    • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press, 315-322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 47
    • 34147195492 scopus 로고    scopus 로고
    • Typhonium baosha-nense Z. L. Dao & H. Li, a new species of Araceae from western Yunnan, China
    • Zhin-Ling D, Shao-Tian C, Yun-Heng J, Heng L. 2007. Typhonium baosha-nense Z. L. Dao & H. Li, a new species of Araceae from western Yunnan, China. Acta Phytotaxonomica Sinica 45: 234-238.
    • (2007) Acta Phytotaxonomica Sinica , vol.45 , pp. 234-238
    • Zhin-Ling, D.1    Shao-Tian, C.2    Yun-Heng, J.3    Heng, L.4
  • 48
    • 0036076653 scopus 로고    scopus 로고
    • Typhonium jinpingense, a new species from Yunnan, China, with the lowest diploid chromosome number in Araceae
    • Zhonglang WHL, Fuhua B. 2002. Typhonium jinpingense, a new species from Yunnan, China, with the lowest diploid chromosome number in Araceae. Novon 12: 286-289.
    • (2002) Novon , vol.12 , pp. 286-289
    • Zhonglang, W.H.L.1    Fuhua, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.