The contribution of short repeats of low sequence complexity to large conifer genomes

Theoretical and Applied Genetics

Volumn 101, Issue 1-2, 2000, Pages 7-14

  Schmidt, A ^a   Doudrick, R L ^b   Heslop Harrison, J S ^c   Schmidt, T ^a  

^a UNIVERSITY OF KIEL   (Germany)

^b USDA FOREST SERVICE   (United States)

^c JOHN INNES CENTRE   (United Kingdom)

Author keywords

Gymnosperms; Microsatellites; Minisatellites; Pinus; Simple sequence repeats; Telomere

Indexed keywords

ANGIOSPERM; GENETIC DIFFERENCE; GENETIC VARIANCE; GYMNOSPERM; HYBRIDIZATION; MICROSATELLITE DNA; PLANT GENOME; REPETITIVE DNA; SEQUENCE HOMOLOGY; SIMPLE SEQUENCE REPEAT; TELOMERE;

GINKGO; PICEA; PINUS ELLIOTTII; PINUS STROBUS;

EID: 0033914631     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051442     Document Type: Article

References (38)

1. Akkaya MS, Bhagwat AA, Cregan PB (1992) Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132:1131-1139
2. Ali S, Müller CR, Epplen JT (1986) DNA fingerprinting by oligonucleotide probes specific for simple repeats. Hum Genet 74: 239-243
3. Becker J, Heun M (1995) Barley microsatellites: allele variation and mapping. Plant Mol Biol 27: 835-845
4. Beyermann B, Nürnberg P, Weihe A, Meixner M, Epplen JT, Börner T (1992) Fingerprinting plant genomes with oligonucleotide probes specific for simple repetitive DNA sequences. Theor Appl Genet 83:691-694
5. Biessmann H, Mason JM (1992) Genetics and molecular biology of telomeres. Adv Genet 30: 185-249
6. Broun P, Tanksley SD (1993) Characterization of tomato DNA clones with sequence similarity to human minisatellites 33.6 and 33.15. Plant Mol Biol 23: 231-242
7. Brown GR, Amarasinghe V, Kiss G, Carlson JE (1993) Preliminary karyotype and chromosomal localization of ribosomal DNA sites in white spruce using fluorescence in situ hybridization. Genome 36:310-316
8. Brown GR, Newton CH, Carlson JE (1998) Organization and distribution of a Sau3A tandem repeated DNA sequence in Picea (Pinaceae) species. Genome 41:560-565
9. Depeiges A, Goubely C, Lenoir A, Cocherel S, Picard G, Raynal M, Grellet F, Dlseny M (1995) Identification of the most-represented repeated motifs in Arabidopsis thaliana microsatellite loci. Theor Appl Genet 91: 160-168
10. Dhillon SS (1987) DNA in tree species. In: Bonga JM, Durzan DJ (eds.): Cell and tissue culture in forestry. Vol. 1. Marinus Nijhoff Publ. Dordrecht, Netherlands, pp 298-313
11. Doudrick RL, Heslop-Harrison JS, Nelson CD, Schmidt T, Nance WL, Schwarzacher T (1995) Karyotype of slash pine (Pinus elliottii var. elliottii) using patterns of fluorescence in situ hybridization and fluorochrome banding. J Hered 86: 289-296
12. Echt CS, May-Marquardt P (1997) Survey of microsatellite DNA in pine. Genome 40: 9-17
13. Fuchs J, Brandes A, Schubert I (1995) Telomere sequence localization and karyotype evolution in higher plants. Plant Syst Evol 196:227-241
14. Kamm A, Schmidt T, Heslop-Harrison JS (1994) Molecular and physical organization of highly repetitive, undermethylated DNA from Pennisetum glaucum. Mol Gen Genet 244:420-425
15. Kamm A, Doudrick RL, Heslop-Harrison JS, Schmidt T (1996) The genomic and physical organization of Tyl-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms. Proc Natl Acad Sci USA 93:2708-2713
16. Khoshoo TN (1961) Chromosome numbers in gymnosperms. Silvae Genet 10: 1-9
17. Kinlaw CS, Neale DB (1997) Complex gene families in pine genomes. Trends Plant Sci 2:356-359
18. Kossack DS, Barrios M, Kinlaw CS (1990) An abundant family of retrotransposons in pines. International Union of Forestry Research Organizations (IUFRO) Molecular Genetics Meeting, September 30-October 4, 1990, Lake Tahoe, Nevada (abstract)
19. Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21: 1111-1115
20. Metais I, Aubry C, Hamon B, Peltier D, Jalouzot R (1998) Cloning, quantification and characterization of a minisatellite DNA sequence from common bean Phaseolus vulgaris L. Theor Appl Genet 97:232-237
21. n, at the telomeres of human chromosomes. Proc Natl Acad Sci USA 85: 6622-6626
22. Murray BG (1998) Nuclear DNA amounts in gymnosperms. Ann of Bot (Suppl) 82:3-15
23. Poulsen GB, Kahl G, Weising K (1993) Abundance and polymorphism of simple repetitive DNA sequences in Brassica napus L. Theor Appl Genet 85: 994-1000
24. Richards ER, Ausubel FM (1988) Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53: 127-136
25. Richards ER, Goodman HM, Ausubel FM (1991) The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucleic Acids Res 19, 3351-3357
26. Richards ER, Vongs A, Walsh M, Yang J, Chao S (1993) Substructure of telomere repeat arrays. In: Heslop-Harrison JS, Flavell RD (eds) The chromosome. BIOS Scientific, Oxford, pp 103-114
27. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
28. Schmidt T, Heslop-Harrison JS (1998) Genomes, genes and junk: the large-scale organization of plant chromosomes. Trends Plant Sci 3:195-199
29. Schmidt T, Boblenz K, Metzlaff M, Kaemmer D, Weising K, Kahl G (1993) DNA-fingerprinting in sugar beet (Beta vulgaris) - identification of double-haploid breeding lines. Theor Appl Genet 85: 653-657
30. Smith DN, Devey ME (1994) Occurrence and inheritance of microsatellites in Pinus radiata. Genome 37: 977-983
31. Thein SL, Wallace RB (1986) The use of synthetic oligonucleotides as specific hybridization probes in the diagnosis of genetic disorders. In: Davies KE (ed) Human genetic diseases - a practical approach, IRL Press, Oxford, pp 33-50
32. Tourmente S, Deragon JM, Lafleuriel J, Tutois S, Pelissier T, Cuvillier C, Espagnol MC, Picard G (1994) Characterization of minisatellites in Arabidopsis thaliana with sequence similarity to the human minisatellite core sequence. Nucleic Acids Res 22: 3317-3321
33. Wagner DB, Furnier GR, Shaghai-Maroof MA, Williams SM, Dancik BP, Allard RW (1987) Chloroplast DNA polymorphism in lodgepole and jack pines and their hybrids. Proc Natl Acad Sci USA 84: 2097-2100
34. Wakamiya I, Newton RJ, Johnston JS, Price HJ (1993) Genome size and environmental factors in the genus Pinus. Am J Bot 80: 1235-1241
35. Weising K, Beyermann B, Ramser, J, Kahl G (1991) Plant DNA fingerprinting with radioactive and digoxigenaled oligonucleotide probes complementary to simple sequence repetitive sequences. Electrophoresis 12:159-169
36. Weising K, Kaemmer D, Weigand F, Epplen JT, Kahl G (1992) Oligonucleotide fingerprinting reveals various probe-dependent levels of informativeness in chickpea (Cicer arietinum L.). Genome 35: 436-442
37. Winberg BC, Zhou Z, Dallas JF, McIntyre CL, Gustafson JP (1993) Characterization of minisatellite sequences from Oryza sativa. Genome 36: 978-983
38. Wu K-S, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241: 225-235