Regulation of the molecular response to oxygen limitations in plants

New Phytologist

Volumn 190, Issue 3, 2011, Pages 550-555

  Licausi, Francesco ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

Author keywords

Anoxia; Ethylene; Ethylene responsive factor (ERF); Hypoxia; Oxygen; Reactive nitrogen species (RNS); Reactive oxygen species (ROS)

Indexed keywords

OXYGEN;

ADAPTATION; ANOXIA; DICOTYLEDON; ETHYLENE; HYPOXIA; LITERATURE REVIEW; METABOLISM; MORPHOLOGY; NITROGEN; NUTRIENT AVAILABILITY; OXYGEN; RICE; SENSOR; SIGNAL; SPATIOTEMPORAL ANALYSIS; SURVIVAL;

ADAPTATION; BIOLOGICAL MODEL; CELL HYPOXIA; DRUG EFFECT; METABOLISM; PLANT; REVIEW; SIGNAL TRANSDUCTION;

ADAPTATION, PHYSIOLOGICAL; CELL HYPOXIA; MODELS, BIOLOGICAL; OXYGEN; PLANTS; SIGNAL TRANSDUCTION;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 79954576644     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2010.03562.x     Document Type: Review

References (40)

1. Armstrong W, Drew MC. 2002. Root growth and metabolism under oxygen deficiency. In: Waisel Y, Eshel A, Kafkafi U, eds. Plant roots: the hidden half. New York, NY, USA: Marcel Dekker, 729-761.
2. Baena-González E, Rolland F, Thevelein JM, Sheen J. 2007. A central integrator of transcription networks in plant stress and energy signaling. Nature 448: 938-942.
3. Bailey-Serres J, Voesenek LACJ. 2008. Flooding stress: acclimations and genetic diversity. Annual Reviews of Plant Biology 59: 313-339.
4. Baxter-Burrell A, Yang Z, Springer PS, Bailey-Serres J. 2002. RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance. Science 296: 2026-2028.
5. Blokhina O, Fagerstedt KV. 2010. Oxidative metabolism, ROS and NO under oxygen deprivation. Plant Physiology and Biochemistry 48: 359-373.
6. Bond DM, Wilson IW, Dennis ES, Pogson BJ, Finnegan JE. 2009. VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions. Plant Journal 59: 576-587.
7. Branco-Price C, Kaiser KA, Jang CJH, Larive CK, Bailey-Serres J. 2008. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant Journal 56: 743-755.
8. Christianson JA, Wilson IW, Llewellyn DJ, Dennis ES. 2009. The low-oxygen-induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis seeds following low-oxygen treatment. Plant Physiology 149: 1724-1738.
9. van Dongen JT, Froehlich A, Ramírez-Aguilar SJ, Schauer N, Fernie AR, Erban A, Kopka J, Clark J, Langer A, Geigenberger P. 2009. Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of Arabidopsis plants. Annals of Botany 103: 269-280.
10. van Dongen JT, Schurr U, Pfister M, Geigenberger P. 2003. Phloem metabolism and function have to cope with low internal oxygen. Plant Physiology 131: 1529-1543.
11. Drew MC, He C-J, Morgan PW. 2003. Programmed cell death and aerenchyma formation in roots. Trends in Plant Science 5: 123-127.
12. Fukao T, Bailey-Serres J. 2008. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of the National Academy of Sciences, USA 105: 16814-16819.
13. Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H et al. 2009. The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature 460: 1026-1030.
14. Hinz M, Wilson IW, Yang J, Buerstenbinder K, Llewellyn D, Dennis ES, Sauter M, Dolferus R. 2010. Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival. Plant Physiology 144: 218-231.
15. Hoeren FU, Dolferus R, Wu Y, Peacock WJ, Dennis ES. 1998. Evidence for a role for AtMYB2 in the induction of the Arabidopsis Alcohol Dehydrogenase gene (ADH1). Low Oxygen Genetics 149: 479-490.
16. Huang S, Colmer TD, Millar AH. 2008. Does anoxia tolerance involve altering the energy currency towards PPi? Trends in Plant Science 13: 221-227.
17. Hughes BT, Espenshade J. 2008. Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member. EMBO Journal 27: 1491-1501.
18. Igamberdiev AU, Hill RD. 2009. Plant mitochondrial function during anaerobiosis. Annals of Botany 103: 259-268.
19. Jung K-H, Seo Y-S, Walia H, Cao P, Fukao T, Canlas PE, Amonpant F, Bailey-Serres J, Ronald PC. 2010. The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology 152: 1674-1692.
20. Komatsu S, Yamamoto R, Nanjo Y, Mikami Y, Yunokawa H, Sakata K. 2009. A comprehensive analysis of the soybean genes andproteins expressed under flooding stress using transcriptomeand proteome techniques. Journal of Proteome Research 8: 4766-4778.
21. Koroleva OA, Calder G, Pendle AF, Kim SH, Lewandowska D, Simpson CG, Jones IM, Brown JWS, Shaw PJ. 2009. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell 21: 1592-1606.
22. Lasanthi-Kudahettige R, Magneschi L, Loreti E, Gonzali S, Licausi F, Novi G, Beretta O, Vitulli F, Alpi A, Perata P. 2007. Transcript profiling of the anoxic rice coleoptile. Plant Physiology 144: 218-231.
23. Lee KW, Chen P-W, Lu C-A, Chen S, Ho T-HD, Yu S-M. 2009. Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding. Science Signaling 2: ra61.
24. Licausi F, Perata P. 2009. Low oxygen signaling and tolerance in plants. Advances in Botanical Research 50: 139-198.
25. Licausi F, van Dongen JT, Giuntoli B, Novi G, Santaniello A, Geigenberger P, Perata P. 2010a. HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana. Plant Journal 62: 302-315.
26. Licausi F, Weits DA, Pant BD, Scheible W-R, Geigenberger P, van Dongen JT. 2010b. Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability. New Phytologist. doi.
27. Loreti E, Poggi A, Novi G, Alpi A, Perata P. 2005. A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia. Plant Physiology 137: 1130-1138.
28. Ma XM, Yoon SO, Richardson CJ, Julich K, Blenis J. 2008. SKAR links pre-mRNA splicing to mTOR/S6K1-mediated enhanced translation efficiency of spliced mRNAs. Cell 133: 303-313.
29. Moldovan D, Spriggs A, Dennis ES, Wilson IW. 2010. The hunt for hypoxia responsive natural antisense short interfering RNAs. Plant Signaling & Behavior 5: 247-251.
30. Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW. 2009. Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis. Journal of Experimental Botany 61: 165-177.
31. Mustroph A, Zanetti ME, Jang CJ, Holtan HE, Repetti PP, Galbraith DW, Girke T, Bailey-Serres J. 2009. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proceedings of the National Academy of Sciences, USA 106: 18843-18848.
32. Nagai K, Hattori Y, Ashikari M. 2010. Stunt or elongate? Two opposite strategies by which rice adapts to floods. Journal of Plant Research 3: 303-309.
33. Nakano T, Suzuki K, Fujimura T, Shinshi H. 2006. Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiology 140: 411-432.
34. Narsai R, Howell KA, Carroll A, Ivanova A, Millar AH, Whealan J. 2009. Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings. Plant Physiology 151: 306-322.
35. Peng H-P, Chan C-S, Shih M-C, Yang SF. 2001. Signaling events in the hypoxic induction of Alcohol Dehydrogenase gene in Arabidopsis. Plant Physiology 126: 742-749.
36. Rocha M, Licausi F, Araujo WL, Nunes-Nesi A, Sodek L, Fernie AR, van Dongen JT. 2010. Glycolysis and the tricarboxylic acid cycle are linked by alanine aminotransferase during hypoxia induced by waterlogging of Lotus japonicas. Plant Physiology 152: 1501-1513.
37. Semenza GL. 2004. Hydroxylation of HIF-1: oxygen sensing at the molecular level. Physiology 19: 176-182.
38. Unden G, Müllner M, Reinhart F. 2010. Sensing of oxygen by bacteria. In: Krämer R, Jung K eds. Bacterial signaling. Weinheim, Germany: Wiley-VCH Verlag GmbH & Co. KGaA. doi.
39. Vidoz ML, Loreti E, Mensuali A, Alpi A, Perata P. 2010. Hormonal interplay during adventitious root formation in flooded tomato plants. Plant Journal 63: 551-562.
40. Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ. 2006. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442: 705-708.